OCT Data

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OCT MS and Healthy Controls Data

Data

  • Data resource for Multiple Sclerosis and Healthy Controls:
  • OCT_Manual_Delineations-2018_June_29.zip (1.8G) contains 35 OCT volumes from a Spectralis Scanner with corresponding manual delineations of nine retinal boundaries. The cohort contains 14 healthy controls and 21 multiple sclerosis patients with age and gender information.
  • The preprocessing and data reader code are in a GitHub Repository.
  • If you use this data please cite: Y. He, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Retinal layer parcellation of optical coherence tomography images: Data resource for Multiple Sclerosis and Healthy Controls", Data in Brief, 22:601-604, 2019. (doi) (PubMed) (PMCID 6327073)



Papers using this Data

  • Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Fully Convolutional Boundary Regression for Retina OCT Segmentation", 22nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019. (doi)
  • Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT", Biomedical Optics Express, 10(10):5042-5058, 2019. (doi)
  • Y. Liu, A. Carass, Y. He, B.J. Antony, A. Filippatou, S. Saidha, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Layer boundary evolution method for macular OCT layer segmentation", Biomedical Optics Express, 10(3):1064-1080, 2019. (doi) (PubMed) (PMCID 6420297)
  • A. Lang, A. Carass, E.K. Swingle, O. Al-Louzi, P. Bhargava, S. Saidha, H.S. Ying, P.A. Calabresi, and J.L. Prince, "Automatic segmentation of microcystic macular edema in OCT", Biomedical Optics Express, 6(1):155-169, 2015. (doi) (PubMed)
  • A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Retinal layer segmentation of macular OCT images using boundary classification", Biomedical Optics Express, 4(7):1133-1152, 2013. (PDF) (doi) (PMCID 3704094)