JohnTools

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Favorite tools

Medical Image Analysis/Visualization

• JIST
  • IACL's medical image processing tools.
• Paraview
  • An open source visualization tool based on VTK.
• MIPAV
  • A nice tool from the NIH with lots of tools for image processing. Some good visualization tools too.
  • My mipav tips
• Camino
  • A nice toolkit for diffusion weighted image processing.
• FSL
  • Good tools for a wide range of analysis tasks.

Programming

• Eclipse

General Analysis

• Matlab
• R

Productivity

• MS Office
• Open Office
• Photoshop
• GIMP
  • An open-source bitmap graphics package
• Inkscape
  • An open-source vector graphics package