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<li>[[File:2020-ISBI-Reinhold-Presentation-Slide0-crop.png|link=https://www.youtube.com/watch?v=9Xu0w18JGW8|Jacob C. Reinhold participates in the first virtual ISBI presenting his work titled '''"Validating uncertainty in medical image translation"'''.  ]]<p class="bss-caption text-center">[http://jcreinhold.github.io Jacob C. Reinhold] participates in the first virtual [https://biomedicalimaging.org/2020/ ISBI] presenting his work titled '''"Validating uncertainty in medical image translation"'''. The presentation is available on [https://www.youtube.com/watch?v=9Xu0w18JGW8 YouTube].</p></li>
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<li>[[File:2019-MICCAI-Yufan-01-Crop.jpg|link=http://iacl.ece.jhu.edu/images/a/a5/2019-MICCAI-Yufan-01-Crop.jpg|Yufan He wins a MICCAI Young Scientist Award for his paper titled '''"Fully convolutional boundary regression for retina OCT segmentation"'''.]]<p class="bss-caption text-center">Yufan He wins a MICCAI Young Scientist Award for his paper titled '''"Fully convolutional boundary regression for retina OCT segmentation"'''.</p></li>
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<li>[[File:156_crop.png|IACL celebrates the PhD defense of Dr. Jeffrey Glaister.]]<p class="bss-caption text-center">IACL celebrates the PhD defense of Dr. Jeffrey Glaister.</p></li>
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<li>[[File:2019-ISBI-Liu-Poster.png|Yihao Liu presenting his poster at ISBI 2019 in Venice, Italy.]]<p class="bss-caption text-center">Yihao Liu presenting his poster at ISBI 2019 in Venice, Italy.</p></li>
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<li>[[File:Mmexport1551130692124_crop.png|Jacob Reinhold discussing his poster at SPIE-MI 2019 in San Diego.]]<p class="bss-caption text-center">Jacob Reinhold discussing his poster at SPIE-MI 2019 in San Diego.</p></li>
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<li>[[File:2018-MICCAI-ADG-Talk_crop.png|Dr. A.D. Gomez giving a talk during the first ever split session at MICCAI 2018. He presented his work titled '''"Quantitative validation of MRI-based motion estimation for brain impact biomechanics"'''.]]<p class="bss-caption text-center">Dr. A.D. Gomez giving a talk during the first ever split session at MICCAI 2018. He presented his work titled '''"Quantitative validation of MRI-based motion estimation for brain impact biomechanics"'''.</p></li>
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<li>[[File:2018-ISBI-Zhao-Crop.png|Can Zhao presenting her poster titled '''"Self Super-Resolution for Magnetic Resonance Images Using Deep Networks"''' at ISBI 2018 in Washington DC.]]<p class="bss-caption text-center">Can Zhao presenting her poster titled '''"Self Super-Resolution for Magnetic Resonance Images Using Deep Networks"''' at ISBI 2018 in Washington DC.</p></li>
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<li>[[File:2018_SPIE_Muhan_Presenting.jpg|Muhan Shao presenting her research at SPIE-MI 2018 in Houston, TX.]]<p class="bss-caption text-center">Muhan Shao presenting her research at SPIE-MI 2018 in Houston, TX.</p></li>
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<li>[[File:ACC_8294_crop.jpg|center]]<p class="bss-caption text-center">[[Prince|Dr. Prince]] celebrating the graduation of Yeyi Yun.</p></li>
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<li>[[File:IMG_3791_cropped.jpg|center]]<p class="bss-caption text-center">[[Prince|Dr. Prince]] at the hooding ceremony for [[Murat|Dr. Bilgel]].</p></li>
 
<li>[[File:IMG_3791_cropped.jpg|center]]<p class="bss-caption text-center">[[Prince|Dr. Prince]] at the hooding ceremony for [[Murat|Dr. Bilgel]].</p></li>
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<li>[[File:2017-DLC-Prince.JPG|center]]<p class="bss-caption text-center">[[Prince|Dr. Prince]] receiving an [http://web.jhu.edu/dlc/our_events/diversity_awards/ award] recognizing his promotion of diversity in the Johns Hopkins community.</p></li>
 
<li>[[File:2017-DLC-Prince.JPG|center]]<p class="bss-caption text-center">[[Prince|Dr. Prince]] receiving an [http://web.jhu.edu/dlc/our_events/diversity_awards/ award] recognizing his promotion of diversity in the Johns Hopkins community.</p></li>
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<li>[[File:IMG_20170509_122333_crop.jpg|center]]<p class="bss-caption text-center">IACL mourns the departure of [https://asjog.github.io/ Dr. Jog]. He is leaving to work for the [https://www.nmr.mgh.harvard.edu/ MGH/HST Martinos Center] in Boston, MA.</p></li>
 
<li>[[File:IMG_20170509_122333_crop.jpg|center]]<p class="bss-caption text-center">IACL mourns the departure of [https://asjog.github.io/ Dr. Jog]. He is leaving to work for the [https://www.nmr.mgh.harvard.edu/ MGH/HST Martinos Center] in Boston, MA.</p></li>
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<li>[[File:Mmexport1486685895738.jpg|center]]<p class="bss-caption text-center">IACL celebrates the departure of Dr. Antony. She is leaving to work for IBM Research in Melbourne, Australia.</p></li>
 
<li>[[File:Mmexport1486685895738.jpg|center]]<p class="bss-caption text-center">IACL celebrates the departure of Dr. Antony. She is leaving to work for IBM Research in Melbourne, Australia.</p></li>
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<li>[[File:2016-NI-Yang.jpg|link=http://dx.doi.org/10.1016/j.neuroimage.2015.09.032|center]]<p class="bss-caption text-center">Z. Yang, C. Ye, J.A. Bogovic, A. Carass, B.M. Jedynak, S.H. Ying, and J.L. Prince,<span> </span><b>"Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease"</b>,<span> </span><i>NeuroImage</i>,<span> </span>127:435-444,<span> </span>2016.<span> </span>[http://dx.doi.org/10.1016/j.neuroimage.2015.09.032 (doi)]</p></li>
 
<li>[[File:2016-NI-Yang.jpg|link=http://dx.doi.org/10.1016/j.neuroimage.2015.09.032|center]]<p class="bss-caption text-center">Z. Yang, C. Ye, J.A. Bogovic, A. Carass, B.M. Jedynak, S.H. Ying, and J.L. Prince,<span> </span><b>"Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease"</b>,<span> </span><i>NeuroImage</i>,<span> </span>127:435-444,<span> </span>2016.<span> </span>[http://dx.doi.org/10.1016/j.neuroimage.2015.09.032 (doi)]</p></li>
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<li>[[File:2016-NIC-Roy.png|link=http://dx.doi.org/doi:10.1016/j.nicl.2016.02.005|center]]<p class="bss-caption text-center">S. Roy, A. Carass, J. Pacheco, M. Bilgel, S.M. Resnick, J.L. Prince, and D.L. Pham,<span> </span><b>"Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation"</b>,<span> </span><i>NeuroImage: Clinical</i>,<span> </span>11:264-275, 2016,<span> </span>[http://dx.doi.org/doi:10.1016/j.nicl.2016.02.005 (doi)]</p></li>
 
<li>[[File:2016-NIC-Roy.png|link=http://dx.doi.org/doi:10.1016/j.nicl.2016.02.005|center]]<p class="bss-caption text-center">S. Roy, A. Carass, J. Pacheco, M. Bilgel, S.M. Resnick, J.L. Prince, and D.L. Pham,<span> </span><b>"Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation"</b>,<span> </span><i>NeuroImage: Clinical</i>,<span> </span>11:264-275, 2016,<span> </span>[http://dx.doi.org/doi:10.1016/j.nicl.2016.02.005 (doi)]</p></li>
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<li>[[File:2015-MIA-Ibragimov.jpg|link=http://dx.doi.org/10.1016/j.media.2014.11.006|center]]<p class="bss-caption text-center">B. Ibragimov, J.L. Prince, E.Z. Murano, J. Woo, M. Stone, B. Likar, F. Pernuš, and T. Vrtovec,<span> </span><b>"Segmentation of tongue muscles from super-resolution magnetic resonance images"</b>,<span> </span><i>Medical Image Analysis</i>,<span> </span>20(1):198-207,<span> </span>2015.<span> </span>[http://dx.doi.org/10.1016/j.media.2014.11.006 (doi)]</p></li>
 
<li>[[File:2015-MIA-Ibragimov.jpg|link=http://dx.doi.org/10.1016/j.media.2014.11.006|center]]<p class="bss-caption text-center">B. Ibragimov, J.L. Prince, E.Z. Murano, J. Woo, M. Stone, B. Likar, F. Pernuš, and T. Vrtovec,<span> </span><b>"Segmentation of tongue muscles from super-resolution magnetic resonance images"</b>,<span> </span><i>Medical Image Analysis</i>,<span> </span>20(1):198-207,<span> </span>2015.<span> </span>[http://dx.doi.org/10.1016/j.media.2014.11.006 (doi)]</p></li>
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<li>[[File:2013-MICCAI-Xing.jpg|link=http://dx.doi.org/10.1007/978-3-642-40760-4_6|center]]<p class="bss-caption text-center">F. Xing, J. Woo, E.Z. Murano, J. Lee, M. Stone, and J.L. Prince,<span> </span><b>"3D Tongue Motion from Tagged and Cine MR Images"</b>,<span> </span><i>16th International Conference on Medical Image Computing and Computer Assisted Intervention</i> (MICCAI 2013), Nagoya, Japan, September 22-26, 2013.<span> </span>[http://dx.doi.org/10.1007/978-3-642-40760-4_6 (doi)]</p></li>
 
<li>[[File:2013-MICCAI-Xing.jpg|link=http://dx.doi.org/10.1007/978-3-642-40760-4_6|center]]<p class="bss-caption text-center">F. Xing, J. Woo, E.Z. Murano, J. Lee, M. Stone, and J.L. Prince,<span> </span><b>"3D Tongue Motion from Tagged and Cine MR Images"</b>,<span> </span><i>16th International Conference on Medical Image Computing and Computer Assisted Intervention</i> (MICCAI 2013), Nagoya, Japan, September 22-26, 2013.<span> </span>[http://dx.doi.org/10.1007/978-3-642-40760-4_6 (doi)]</p></li>
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<li>[[File:IMG_20160517_120218495_25.jpg|link=News|center]]<p class="bss-caption text-center">Drs. Yang, Xing, and Jog celebrate receiving their PhDs with Jerry L. Prince.</p></li>
 
<li>[[File:IMG_20160517_120218495_25.jpg|link=News|center]]<p class="bss-caption text-center">Drs. Yang, Xing, and Jog celebrate receiving their PhDs with Jerry L. Prince.</p></li>
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<li>[[File:Andrew_Lang_ARVO2015.jpg|link=News|center]]<p class="bss-caption text-center">Dr. Andrew Lang presented his poster "Automated segmentation of macular SD-OCT scans of retinitis pigmentosa patients shows regional patterns of foveal inner retinal thickening that correlate with visual function" at ARVO 2015 in Denver, Colorado.</p></li>
 
<li>[[File:Andrew_Lang_ARVO2015.jpg|link=News|center]]<p class="bss-caption text-center">Dr. Andrew Lang presented his poster "Automated segmentation of macular SD-OCT scans of retinitis pigmentosa patients shows regional patterns of foveal inner retinal thickening that correlate with visual function" at ARVO 2015 in Denver, Colorado.</p></li>
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{{h3|15 Most Recent IACL papers from PubMed}}
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{{h3|15 Most Recent IACL papers on PubMed}}
 
<pubmed limit=15>(Prince, Jerry L[Full Author Name] OR Carass, Aaron[Full Author Name]) AND ("2015"[PDAT] : "3000"[PDAT])</pubmed>
 
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{{h3|Recent News Items}}
 
{{h3|Recent News Items}}
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{{#lst:News/2020|recent}}
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{{#lst:News/2019|recent}}
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<center>'''See all our old [[News]]'''</center>
 
<center>'''See all our old [[News]]'''</center>
  
 
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Latest revision as of 16:28, 22 May 2020


15 Most Recent IACL papers on PubMed

Shuo Han, Aaron Carass, Yufan He, Jerry L Prince
Automatic Cerebellum Anatomical Parcellation using U-Net with Locally Constrained Optimization.
Neuroimage: 2020;116819
[PubMed:32438049] [DOI]

Aaron Carass, Snehashis Roy, Adrian Gherman, Jacob C Reinhold, Andrew Jesson, Tal Arbel, Oskar Maier, Heinz Handels, Mohsen Ghafoorian, Bram Platel, Ariel Birenbaum, Hayit Greenspan, Dzung L Pham, Ciprian M Crainiceanu, Peter A Calabresi, Jerry L Prince, William R Gray Roncal, Russell T Shinohara, Ipek Oguz
Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis.
Sci Rep: 2020, 10(1);8242
[PubMed:32427874] [DOI]

Shuo Han, Aaron Carass, Jerry L Prince
Hierarchical Parcellation of the Cerebellum.
Med Image Comput Comput Assist Interv: 2019, 11766;484-491
[PubMed:32399521] [DOI]

Angeliki G Filippatou, Jeffrey Lambe, Elias S Sotirchos, Kathryn C Fitzgerald, Andrew Aston, Olwen C Murphy, Nicole Pellegrini, Nicholas Fioravante, Hunter Risher, Esther Ogbuokiri, Ohemaa Kwakyi, Brandon Toliver, Simidele Davis, Nicholas Luciano, Ciprian Crainiceanu, Jerry L Prince, Ellen M Mowry, Peter A Calabresi, Shiv Saidha
Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis.
Mult. Scler.: 2020;1352458519900942
[PubMed:32297826] [DOI]

Elias S Sotirchos, Natalia Gonzalez Caldito, Angeliki Filippatou, Kathryn C Fitzgerald, Olwen C Murphy, Jeffrey Lambe, James Nguyen, Julia Button, Esther Ogbuokiri, Ciprian M Crainiceanu, Jerry L Prince, Peter A Calabresi, Shiv Saidha, International Multiple Sclerosis Visual System (IMSVISUAL) Consortium
Progressive Multiple Sclerosis Is Associated with Faster and Specific Retinal Layer Atrophy.
Ann. Neurol.: 2020, 87(6);885-896
[PubMed:32285484] [DOI]

Arnold D Gomez, Maureen L Stone, Jonghye Woo, Fangxu Xing, Jerry L Prince
Analysis of fiber strain in the human tongue during speech.
Comput Methods Biomech Biomed Engin: 2020;1-11
[PubMed:32031425] [DOI]

Yufan He, Aaron Carass, Yihao Liu, Bruno M Jedynak, Sharon D Solomon, Shiv Saidha, Peter A Calabresi, Jerry L Prince
Fully Convolutional Boundary Regression for Retina OCT Segmentation.
Med Image Comput Comput Assist Interv: 2019, 11764;120-128
[PubMed:31853524] [DOI]

Yufan He, Aaron Carass, Yihao Liu, Bruno M Jedynak, Sharon D Solomon, Shiv Saidha, Peter A Calabresi, Jerry L Prince
Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT.
Biomed Opt Express: 2019, 10(10);5042-5058
[PubMed:31646029] [DOI]

Jacob C Reinhold, Blake E Dewey, Aaron Carass, Jerry L Prince
Evaluating the Impact of Intensity Normalization on MR Image Synthesis.
Proc SPIE Int Soc Opt Eng: 2019, 10949;
[PubMed:31551645] [DOI]

Maureen Stone, Arnold D Gomez, Jiachen Zhuo, Ange Lydie Tchouaga, Jerry L Prince
Quantifying Tongue Tip Shape in Apical and Laminal /s/: Contributions of Palate Shape.
J. Speech Lang. Hear. Res.: 2019, 62(9);3149-3159
[PubMed:31469967] [DOI]

Elias S Sotirchos, Angeliki Filippatou, Kathryn C Fitzgerald, Sara Salama, Santiago Pardo, Jiangxia Wang, Esther Ogbuokiri, Norah J Cowley, Nicole Pellegrini, Olwen C Murphy, Maureen A Mealy, Jerry L Prince, Michael Levy, Peter A Calabresi, Shiv Saidha
Aquaporin-4 IgG seropositivity is associated with worse visual outcomes after optic neuritis than MOG-IgG seropositivity and multiple sclerosis, independent of macular ganglion cell layer thinning.
Mult. Scler.: 2019;1352458519864928
[PubMed:31364464] [DOI]

Jonghye Woo, Fangxu Xing, Maureen Stone, Jordan Green, Timothy G Reese, Thomas J Brady, Van J Wedeen, Jerry L Prince, Georges El Fakhri
Speech Map: A Statistical Multimodal Atlas of 4D Tongue Motion During Speech from Tagged and Cine MR Images.
Comput Methods Biomech Biomed Eng Imaging Vis: 2019, 7(4);361-373
[PubMed:31328049] [DOI]

Nahla M H Elsaid, Jerry L Prince, Steven Roys, Rao P Gullapalli, Jiachen Zhuo
Phase Image Texture Analysis for Motion Detection in Diffusion MRI (PITA-MDD).
Magn Reson Imaging: 2019, 62;228-241
[PubMed:31319127] [DOI]

Blake E Dewey, Can Zhao, Jacob C Reinhold, Aaron Carass, Kathryn C Fitzgerald, Elias S Sotirchos, Shiv Saidha, Jiwon Oh, Dzung L Pham, Peter A Calabresi, Peter C M van Zijl, Jerry L Prince
DeepHarmony: A deep learning approach to contrast harmonization across scanner changes.
Magn Reson Imaging: 2019, 64;160-170
[PubMed:31301354] [DOI]

Fangxu Xing, Maureen Stone, Tessa Goldsmith, Jerry L Prince, Georges El Fakhri, Jonghye Woo
Atlas-Based Tongue Muscle Correlation Analysis From Tagged and High-Resolution Magnetic Resonance Imaging.
J. Speech Lang. Hear. Res.: 2019, 62(7);2258-2269
[PubMed:31265364] [DOI]


Also see our complete Publications list



Recent News Items


2020

May

  • The paper "Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis" appears in the journal Nature Scientific Reports.  (doi)  (PubMed)
  • Shuo Han's paper "Automatic Cerebellum Anatomical Parcellation using U-Net with Locally Constrained Optimization" appears in NeuroImage.  (doi)


April

Jacob Reinhold's presentation from ISBI 2020.
  • Jacob C. Reinhold participates in the first virtual ISBI presenting his work titled "Validating uncertainty in medical image translation". The presentation is available on YouTube.



February

  • IACL members present papers at the SPIE Medical Imaging (SPIE-MI 2020) meeting in Houston, TX, February 15 - 20, 2020.
    • Prof. J.L. Prince presented work by Yufan He "Adversarial domain adaptation for multi-device retinal OCT segmentation".
    • Jacob Reinhold presented "Finding novelty with uncertainty".
    • Yihao Liu presented "Variational intensity cross channel encoder for unsupervised vessel segmentation on OCT angiography".
    • Shuo Han presented "Reflection-equivariant convolutional neural networks improve segmentation over reflection augmentation".
    • Yihao Liu presented work by Yufan He "Segmenting retinal OCT images with inter-B-scan and longitudinal information".
  • Other accepted papers at SPIE-MI 2020 coming from collaborations with IACL.
    • With Jonghye Woo from Harvard Medical School "Identifying the common and subject-specific functional units of speech movements via a joint sparse non-negative matrix factorization framework".


IACL at SPIE 2020
2020-SPIE-SH-Poster-1.jpg 2020-SPIE-SH-Poster-2.jpg
Shuo Han presenting his poster titled "Reflection-equivariant convolutional neural networks improve segmentation over reflection augmentation".
 
2020-SPIE-JCR-Audience.jpg 2020-SPIE-YL-Poster-1.jpg
Jacob Reinhold enjoying a plenary talk. Yihao Liu presenting a poster.




2019

December

  • Can Zhao's paper titled "Applications of a deep learning method for anti-aliasing and super-resolution in MRI" appears in Magnetic Resonance in Medicine  (doi)  (PubMed)
  • Blake Dewey's paper titled "DeepHarmony: A deep learning approach to contrast harmonization across scanner changes" also appears in the same special issue of Magnetic Resonance in Medicine  (doi)  (PubMed)


November

IACL wins the 2019 ECE Pumpkin Carving Contest!!
  • IACL members win the 2019 ECE Pumpkin Carving Contest!!
    This is our second consecutive Pumpkin Carving Contest win, and our third win in five years.



October

IACL at MICCAI 2019
2019-MICCAI-Yufan-02.jpg   2019-MICCAI-Shuo-01.jpg

2019-MICCAI-Can-01.jpg
Can Zhao wins best paper at the SASHIMI Workshop at MICCAI 2019.


  • IACL members present papers at the 22nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019.
    • Can Zhao presented "iSMORE: An iterative self super-resolution algorithm" at the SASHIMI Workshop.
    • Yufan He presented "Fully Convolutional Boundary Regression for Retina OCT Segmentation".
    • Shuo Han presented "Hierarchical Parcellation of the Cerebellum".


Jeffrey Glaister celebrating the defense of his PhD titled "Brain structure segmentation using multiple MRI pulse sequences", pictured with Dr. Jerry L. Prince.
  • Dr. Jeffrey Glaister successfully defends his thesis titled "Brain structure segmentation using multiple MRI pulse sequences".




See all our old News