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15 Most Recent IACL papers on PubMed

Mallika Singh, Eleanor Pahl, Shangxian Wang, Aaron Carass, Junghoon Lee, Jerry L Prince
Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network.
Proc SPIE Int Soc Opt Eng: 2021, 11596;
[PubMed:34548736] [DOI]

Lianrui Zuo, Blake E Dewey, Yihao Liu, Yufan He, Scott D Newsome, Ellen M Mowry, Susan M Resnick, Jerry L Prince, Aaron Carass
Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory.
Neuroimage: 2021, 243;118569
[PubMed:34506916] [DOI]

Yufan He, Aaron Carass, Lianrui Zuo, Blake E Dewey, Jerry L Prince
Autoencoder based self-supervised test-time adaptation for medical image analysis.
Med Image Anal: 2021, 72;102136
[PubMed:34246070] [DOI]

Philip V Bayly, Ahmed Alshareef, Andrew K Knutsen, Kshitiz Upadhyay, Ruth J Okamoto, Aaron Carass, John A Butman, Dzung L Pham, Jerry L Prince, K T Ramesh, Curtis L Johnson
MR Imaging of Human Brain Mechanics In Vivo: New Measurements to Facilitate the Development of Computational Models of Brain Injury.
Ann Biomed Eng: 2021, 49(10);2677-2692
[PubMed:34212235] [DOI]

Jonghye Woo, Fangxu Xing, Jerry L Prince, Maureen Stone, Arnold D Gomez, Timothy G Reese, Van J Wedeen, Georges El Fakhri
A deep joint sparse non-negative matrix factorization framework for identifying the common and subject-specific functional units of tongue motion during speech.
Med Image Anal: 2021, 72;102131
[PubMed:34174748] [DOI]

Arnold D Gomez, Philip V Bayly, John A Butman, Dzung L Pham, Jerry L Prince, Andrew K Knutsen
##Title##
J R Soc Interface: 2021, 18(179);20210251
[PubMed:34157896] [DOI]

Angeliki G Filippatou, Eleni S Vasileiou, Yufan He, Kathryn C Fitzgerald, Grigorios Kalaitzidis, Jeffrey Lambe, Maureen A Mealy, Michael Levy, Yihao Liu, Jerry L Prince, Ellen M Mowry, Shiv Saidha, Peter A Calabresi, Elias S Sotirchos
Optic Neuritis-Independent Retinal Atrophy in Neuromyelitis Optica Spectrum Disorder.
J Neuroophthalmol: 2021;
[PubMed:34108402] [DOI]

Fangxu Xing, Maureen Stone, Jerry L Prince, Xiaofeng Liu, Georges El Fakhri, Jonghye Woo
Floor-of-the-Mouth Muscle Function Analysis Using Dynamic Magnetic Resonance Imaging.
Proc SPIE Int Soc Opt Eng: 2021, 11596;
[PubMed:34012189] [DOI]

Andrew K Knutsen, Arnold D Gomez, Mihika Gangolli, Wen-Tung Wang, Deva Chan, Yuan-Chiao Lu, Eftychios Christoforou, Jerry L Prince, Philip V Bayly, John A Butman, Dzung L Pham
In vivo estimates of axonal stretch and 3D brain deformation during mild head impact.
Brain Multiphys: 2020, 1;
[PubMed:33870238] [DOI]

Jeffrey Lambe, Hunter Risher, Angeliki G Filippatou, Olwen C Murphy, Elias S Sotirchos, Henrik Ehrhardt, Esther Ogbuokiri, Nicole Pellegrini, Brandon Toliver, Nicholas J Luciano, Simidele Davis, Nicholas Fioravante, Ohemaa Kwakyi, Jerry L Prince, Peter A Calabresi, Kathryn C Fitzgerald, Shiv Saidha
Modulation of Retinal Atrophy With Rituximab in Multiple Sclerosis.
Neurology: 2021, 96(20);e2525-e2533
[PubMed:33827962] [DOI]

Jiachen Zhuo, Li Jiang, Chandler Sours Rhodes, Steven Roys, Karthikamanthan Shanmuganathan, Hegang Chen, Jerry L Prince, Neeraj Badjatia, Rao P Gullapalli
Early Stage Longitudinal Subcortical Volumetric Changes following Mild Traumatic Brain Injury.
Brain Inj: 2021, 35(6);725-733
[PubMed:33822686] [DOI]

Xiao Liang, Pan Su, Sunil G Patil, Nahla M H Elsaid, Steven Roys, Maureen Stone, Rao P Gullapalli, Jerry L Prince, Jiachen Zhuo
Prospective motion detection and re-acquisition in diffusion MRI using a phase image-based method-Application to brain and tongue imaging.
Magn Reson Med: 2021, 86(2);725-737
[PubMed:33665929] [DOI]

Jeffrey Lambe, Kathryn C Fitzgerald, Olwen C Murphy, Angeliki G Filippatou, Elias S Sotirchos, Grigorios Kalaitzidis, Elena Vasileiou, Nicole Pellegrini, Esther Ogbuokiri, Brandon Toliver, Nicholas J Luciano, Simidele Davis, Nicholas Fioravante, Ohemaa Kwakyi, Hunter Risher, Ciprian M Crainiceanu, Jerry L Prince, Scott D Newsome, Ellen M Mowry, Shiv Saidha, Peter A Calabresi
Association of Spectral-Domain OCT With Long-term Disability Worsening in Multiple Sclerosis.
Neurology: 2021, 96(16);e2058-e2069
[PubMed:33653904] [DOI]

Olwen C Murphy, Grigorios Kalaitzidis, Eleni Vasileiou, Angeliki G Filippatou, Jeffrey Lambe, Henrik Ehrhardt, Nicole Pellegrini, Elias S Sotirchos, Nicholas J Luciano, Yihao Liu, Kathryn C Fitzgerald, Jerry L Prince, Peter A Calabresi, Shiv Saidha
Optical Coherence Tomography and Optical Coherence Tomography Angiography Findings After Optic Neuritis in Multiple Sclerosis.
Front Neurol: 2020, 11;618879
[PubMed:33384660] [DOI]

Angeliki G Filippatou, Mohammed Moniruzzaman, Elias S Sotirchos, Kathryn C Fitzgerald, Grigorios Kalaitzidis, Jeffrey Lambe, Eleni Vasileiou, Shiv Saidha, Jerry L Prince, Norman Haughey, Peter A Calabresi, Pavan Bhargava
Serum ceramide levels are altered in multiple sclerosis.
Mult Scler: 2021, 27(10);1506-1519
[PubMed:33307993] [DOI]

Recent News Items

2021

October

• Brain Biomechanics Imaging Resources now has 30 datasets available for download.
  • 10 subjects from the Henry Jackson Foundation, imaged with tagged magnetic resonance.
  • 10 subjects from University of Delaware, imaged with high resolution magnetic resonance elastography at multiple frequencies (30Hz, 50Hz, 70Hz).
  • 10 subjects from Washington University in St. Louis, imaged with magnetic resonance elastography at multiple frequencies (20Hz, 30Hz, 50Hz, 70Hz, 90Hz).
  • All data includes structural magnetic resonance images (T1-w, T2-w) and diffusion weighted images.
  • The structural images have been processed with SLANT-MACRUISE. The diffusion images with TORTOISE.
  • Individual subjects can be downloaded or complete site sets.
  • Site information and subject details can be found in the available BBIR documents.

• Ahmed Alshareef's paper titled "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Brain Models" appears in Brain Multiphysics.  (doi)
• Ahmed Alshareef presented "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Finite Element Brain Models" at the Biomedical Engineering Society (BMES) Annual Meeting, Orlando, FL, October 6-9, 2021.
• Jerry L. Prince delivered a keynote at the DALI MICCAI Workshop.

September

• Samuel W. Remedios presented "Joint Image and Label Self-Super-Resolution" at the Simulation and Synthesis in Medical Imaging (SASHIMI 2021) in conjunction with the 24^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021), Strasbourg, France, September 27 – October 1, 2021.  (doi)
• Jacob C. Reinhold presented "A Structural Causal Model for MR Images of Multiple Sclerosis" at the 24^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021), Strasbourg, France, September 27 – October 1, 2021.  (doi)
• Lianrui Zuo's paper titled "Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory" appears in NeuroImage.  (doi)

August

• Yufan He successfully defends his thesis titled "Retinal OCT Image Analysis Using Deep Learning".

July

• A paper on our Brain Biomechanics project titled "MR imaging of human brain mechanics in vivo: new measurements to facilitate the development of computational models of brain injury" appears in Annals of Biomedical Engineering.  (doi)

June

• Yufan He's paper titled "Autoencoder Based Self-Supervised Test-Time Adaptation for Medical Image Analysis" appears in Medical Image Analysis.  (doi)
• Congratulations to Lianrui Zuo on winning the Best Poster Award at the 27^th Conference on Information Processing in Medical Imaging (IPMI 2021), Virtually in Bornholm, Denmark, June 28 - July 2, 2021.
• IACL papers at the 27^th Conference on Information Processing in Medical Imaging (IPMI 2021), Virtually in Bornholm, Denmark, June 28 - July 2, 2021.
  • Lianrui Zuo presents his poster teaser for "Information-based Disentangled Representation Learning for Unsupervised MR Harmonization".
  • Shuo Han presents his poster teaser for "MR Slice Profile Estimation by Learning to Match Internal Patch Distributions".

April

• IACL papers at the 18^th IEEE International Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021.
  • Shuo Han presented "Slice profile estimation from 2D MRI acquisition using generative adversarial networks".
  • Our collaborator, Xiaofeng Liu at Massachusetts General Hospital, presented "Dual-Cycle constrained bijective VAE-GAN for Tagged-to-Cine magnetic resonance image synthesis".

March

• Can Zhao's paper titled "SMORE: A Self-supervised Anti-aliasing and Super-resolution Algorithm for MRI Using Deep Learning" appears in IEEE Trans. on Medical Imaging.  (doi)
  • The related software can be downloaded from our page about SMORE.

February

• IACL members papers from the Proceedings of SPIE Medical Imaging (SPIE-MI 2021), San Diego, CA, February 14–18, 2021.
  • ShangXian Wang presented "Thalamus Segmentation Using Convolutional Neural Network".  (doi)
  • Mallika Singh presented "Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network".  (doi)
  • Di Liu presented "Label super resolution for 3D Magnetic Resonance Images using Deformable U-net".  (doi)
  • Muhan Shao presented "Reconstruction and refinement of crossing muscle fibers in the human tongue".  (doi)
  • Muhan Shao presented "Dynamic palatogram generation from Cine MRI for normalized speech assessment".  (doi)

January

• Jerry L. Prince presented the Medical Imaging keynote at NeurIPS "New Approaches for Magnetic Resonance Image Harmonization", the video is now on YouTube .

2020

December

• Yufan He's paper titled "Structured layer surface segmentation for retina OCT using fully convolutional regression networks" appears in the MICCAI Special Issue of Medical Image Analysis.  (doi).

October

• IACL members present papers at the 23^rd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2020), Lima, Peru, October 4 - 8, 2020.
  • Yufan He presented "Self domain adapted network".  (doi)
  • Blake Dewey presented "A Disentangled Latent Space for Cross-Site MRI Harmonization".  (doi)

• IACL members had the following presentations at MICCAI 2020 Workshops:
  • Lianrui Zuo presented "Synthesize Realistic MR Images with Noise Control" at SASHIMI 2020.  (doi)
  • Shuo Han presented "Inhomogeneity Correction in Magnetic Resonance Images Using Deep Image Priors" at MLMI 2020.  (doi)
  • Muhan Shao presented "Direct reconstruction of crossing muscle fibers in the human tongue using a deep neural network" at CDMRI 2020.

August

• From our collaboration with Xi’an Jiaotong University, the paper "Unsupervised MR-to-CT Synthesis using Structure-Constrained CycleGAN" appears in IEEE Trans. on Medical Imaging.  (doi)

July

• Shuo Han's paper "Longitudinal analysis of regional cerebellum volumes during normal aging" appears in NeuroImage.  (doi)  (PubMed)

June

• Brain Biomechanics Imaging Resources releases more data.
  • Data is from University of Delaware and Washington University in St. Louis.
  • Includes five new subjects (Two from University of Delaware and three from Washington University in St. Louis).
  • The data is magnetic resonance elastography at multiple frequencies (20Hz through 90Hz).
• Christian Barillot passed away on June 14, he was a well known and liked researcher in the Medical Imaging Community. There is a memorial page for him at IRISA.

May

• The paper "Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis" appears in the journal Nature Scientific Reports.  (doi)  (PubMed)
• Shuo Han's paper "Automatic Cerebellum Anatomical Parcellation using U-Net with Locally Constrained Optimization" appears in NeuroImage.  (doi)