Difference between revisions of "Publications"

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{{iacl-pub|author=M. Chen, A. Carass, A. Jog, J. Lee, S. Roy, and J.L. Prince|title=Cross contrast multi-channel image registration using image synthesis for MR brain images|jrnl=mri|when=2017|doi=10.1016/j.media.2016.10.005}}
 
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{{iacl-pub|author=F. Xing, J.L. Prince, M.L. Stone, V.J. Wedeen, G. El Fakhri, and J. Woo|title=A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging|conf=spie2017}}
 
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{{iacl-pub|author=B.E. Dewey, A. Carass, A.M. Blitz, and J.L. Prince|title=Efficient Multi-Atlas Registration using an Intermediate Template Image|conf=spie2017}}
 
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{{iacl-pub|author=J.A. Ramsey, A.D. Gomez, J.L. Prince|title=Test-suite for image-based motion estimation of the brain and tongue|conf=spie2017}}
 
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{{iacl-pub|author=B.J. Antony, A. Carass, A. Lang, B.-J. Kim, D.J. Zack, and J.L. Prince|title=Longitudinal Analysis of Mouse OCT Volumes|conf=spie2017}}
 
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{{iacl-pub|author=J. Glaister, A. Carass, D. L. Pham, and J.L. Prince|title=Automatic falx cerebri and tentorium cerebelli segmentation from Magnetic Resonance Images|conf=spie2017}}
 
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{{iacl-pub|author=A. Lang, A. Carass, A.K. Bittner, H.S. Ying, and J.L. Prince|title=Improving graph-based OCT segmentation for severe pathology in Retinitis Pigmentosa patients|conf=spie2017}}
 
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{{iacl-pub|author=J. Lee, A. Carass, A. Jog, C. Zhao, and J. L. Prince|title=Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning|conf=spie2017}}
 
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{{iacl-pub|author=Y. Yun, A. Carass, A. Lang, J.L. Prince, and B.J. Antony|title=Collaborative SDOCT Segmentation and Analysis Software|conf=spie2017}}
 
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{{iacl-pub|author=S. Reaungamornrat, T. De Silva, A. Uneri, S. Vogt, G. Kleinszig, A.J. Khanna, J.-P. Wolinsky, J.L. Prince, and J.H. Siewerdsen|title=MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery|jrnl=tmi|number=''In Press''|when=2017|doi=10.1109/TMI.2016.2576360}}
 
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{{iacl-pub|author=C Ye and J.L. Prince|title=Probabilistic tractography using Lasso bootstrap|jrnl=mia|number=35:544-553|when=2017|doi=10.1016/j.media.2016.08.013}}
 
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{{iacl-pub|author=A. Jog, A. Carass, S. Roy, D.L. Pham, and J.L. Prince|title=Random Forest Regression for Magnetic Resonance Image Synthesis|jrnl=mia|number=35:475-488|when=2017|doi=10.1016/j.media.2016.08.009}}
 
  
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{{PubPage_2016}}
  
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{{h4|2016}}
 
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{{iacl-pub|author=S. Roy, Y.-Y. Chou, A. Jog, J. Butman, and D.L. Pham|title=Patch Based Synthesis of Whole Head MR Images: Application to EPI Distortion Correction|when=SASHIMI: Simulation and Synthesis in Medical Imaging Workshop at the {{iacl-pub miccai2016}}|period=}}
 
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{{iacl-pub|author=A. Jog, A. Carass, and J.L. Prince|title=Self Super-resolution for Magnetic Resonance Images|conf=miccai2016|doi=10.1007/978-3-319-46726-9_64}}
 
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{{iacl-pub|author=A.D. Gomez, F. Xing, D. Chan, D.L. Pham, P. Bayly, and J.L. Prince|title=Motion Estimation with Finite-Element Biomechanical Models and Tracking Constraints from Tagged MRI|when=Computational Biomechanics for Medicine XI Workshop at the {{iacl-pub miccai2016}}|period=}}
 
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{{iacl-pub|author=F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone and J.L. Prince|title=Incompressible Phase Registration for Motion Estimation from Tagged Magnetic Resonance Images|when=Reconstruction and Analysis of Moving Body Organs‎ (RAMBO 2016) Workshop at the {{iacl-pub miccai2016}}|period=}}
 
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{{iacl-pub|author=S. Roy, A. Carass, J. Pacheco, M. Bilgel, S.M. Resnick, J.L. Prince, and D.L. Pham|title=Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation|journal=NeuroImage: Clinical|number=11:264-275|when=2016|doi=doi:10.1016/j.nicl.2016.02.005}}
 
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{{iacl-pub|author=Y. Huo, A.J. Plassard, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landmann|title=Consistent Cortical Reconstruction and Multi-atlas Brain Segmentation|jrnl=ni|number=138:197-210|when=2016|doi=10.1016/j.neuroimage.2016.05.030}}
 
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{{iacl-pub|author=C. Ye, J. Zhuo, R.P. Gullapalli, and J.L. Prince|title=Estimation of fiber orientations using neighborhood information|jrnl=mia|number=32:243-256|when=2016|doi=10.1016/j.media.2016.05.008}}
 
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{{iacl-pub|author=M. Bilgel, J.L. Prince, D.F. Wong, S.M. Resnick, and B.M. Jedynak|title=A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging|jrnl=ni|number=134:658-670|when=2016|doi=10.1016/j.neuroimage.2016.04.001}}
 
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{{iacl-pub|author=F. Xing, J.L. Prince, and B.A. Landman|title=Investigation of Bias in Continuous Medical Image Label Fusion|jrnl=pone|number=11(6):e0155862|when=2016|doi=10.1371/journal.pone.0155862}}
 
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{{iacl-pub|author=F. Xing, J. Woo, J. Lee, E.Z. Murano, M. Stone, and J.L. Prince|title=Analysis of 3-D Tongue Motion From Tagged and Cine Magnetic Resonance Images|journal=Jrnl. of Speech, Language, and Hearing Research|number=59(3):468-479|when=2016|doi=10.1044/2016_JSLHR-S-14-0155}}
 
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{{iacl-pub|author=Z. Yang, C. Ye, J.A. Bogovic, A. Carass, B.M. Jedynak, S.H. Ying, and J.L. Prince|title=Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease|jrnl=ni|number=127:435-444|when=2016|doi=10.1016/j.neuroimage.2015.09.032}}<!--
 
  
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{{iacl-pub|author=E. Dehghan, Y. Le, J. Lee, D. Song, G. Fichtinger, and J.L. Prince|title=CT and MRI Fusion for Postimplant Prostate Brachytherapy Evaluation|conf=isbi2016|doi=10.1109/ISBI.2016.7493345}}
 
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{{iacl-pub|author=A. Lang, A. Carass, B.M. Jedynak, S.D. Solomon, P.A. Calabresi, and J.L. Prince|title=Intensity Inhomogeneity Correction of Macular OCT Using N3 and Retinal Flatspace|number=197-200|conf=isbi2016|doi=10.1109/ISBI.2016.7493243|pubmed=27695603|pmcid=5042207}}
 
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{{iacl-pub|author=D. Coon, L. Chen, E.M. Boctor, J.L. Prince, and B. Bojovic|title=Proof-of-Concept Studies for Marker-Based Ultrasound Doppler Analysis of Microvascular Anastomoses in a Modified Large Animal Model|journal=Jrnl. of Reconstructive Microsurgery|number=32(04):251-255|when=2016|doi=10.1055/s-0035-1568158}}
 
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{{iacl-pub|author=M. Bilgel, Y. An, Y. Zhou, D.F. Wong, J.L. Prince, L. Ferrucci, and S.M. Resnick|title=Individual estimates of age at detectable amyloid onset for risk factor assessment|journal=Alzheimer's & Dementia|number=12(4):373-379|when=2016|doi=10.1016/j.jalz.2015.08.166|pubmed=26588863|pmcid=4841700}}
 
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{{iacl-pub|author=J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince|title=A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI|journal=Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization|number=1-12|when=2016|doi=10.1080/21681163.2016.1169220}}
 
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{{iacl-pub|author=M. Stone, J. Woo, J. Lee, T. Poole, A. Seagraves, M. Chung, E. Kim, E.Z Murano, J.L. Prince, and S.S. Blemker|title=Structure and variability in human tongue muscle anatomy|journal=Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization|number=1-9|when=2016|doi=10.1080/21681163.2016.1162752}}<!--
 
  
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{{iacl-pub|author=L. Liu, J. Glaister, X. Sun, A. Carass, T.D. Tran, and J.L. Prince|title=Segmentation of Thalamus from MR images via Task-Driven Dictionary Learning|conf=spie2016|pdf=proceedings/iacl/2016/LiuxSPIE16-Thalamus_Dictionary_Learning.pdf|doi=10.1117/12.2214206}}
 
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{{iacl-pub|author=S.M. Abulnaga, Z. Yang, A. Carass, K. Kansal, B.M. Jedynak, C.U. Onyike, S.H. Ying, and J.L. Prince|title=A toolbox to visually explore cerebellar sub-structure shape changes in cerebellar ataxia|conf=spie2016}}
 
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{{iacl-pub|author=Z. Yang, S.M. Abulnaga, A. Carass, K. Kansal, B.M. Jedynak, C. Onyike, S.H. Ying, and J.L. Prince|title=Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Structural Change Pattern Visualization|conf=spie2016|pdf=proceedings/iacl/2016/YanxSPIE16-Cerebellum_Landmark.pdf|doi=10.1117/12.2217313}}
 
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{{iacl-pub|author=J. Glaister, A. Carass, J.V. Stough, P.A. Calabresi, and J.L. Prince|title=Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors|conf=spie2016|pdf=proceedings/iacl/2016/GlaxSPIE16-Thalamus.pdf|doi=10.1117/12.2216987}}
 
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{{iacl-pub|author=Y. Huo, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landman|title=Combining Multi-atlas Segmentation with Brain Surface Estimation|conf=spie2016|doi=10.1117/12.2216604}}
 
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{{iacl-pub|author=L.M. Ellingsen, S. Roy, A. Carass, D.L. Pham, A.M. Blitz, and J.L. Prince|title=Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling|conf=spie2016|pdf=proceedings/iacl/2016/EllxSPIE16-NPH_RUDOLPH.pdf|doi=10.1117/12.2216511}}
 
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{{iacl-pub|author=A.J. Plassard, Z. Yang, S. Rane, J.L. Prince, D.O. Claassen, and B.A. Landman|title=Improving cerebellar segmentation with statistical fusion|conf=spie2016|doi=10.1117/12.2216966}}
 
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{{iacl-pub|author=K. Li, C. Ye, Z. Yang, A. Carass, S.H. Ying, and J.L. Prince|title=Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles|conf=spie2016|pdf=proceedings/iacl/2016/LixSPIE16-Quality_Assurance.pdf|doi=10.1117/12.2217309}}
 
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{{iacl-pub|author=C. Zhao, A. Carass, A. Jog, and J.L. Prince|title=Effects of Spatial Resolution on Image Registration|conf=spie2016|doi=10.1117/12.2217322}}
 
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{{iacl-pub|author=S. Reaungamornrat, T. De Silva, A. Uneri, J.-P. Wolinsky,  A.J. Khanna,  G. Klienszig, S. Vogt, J.L. Prince, and J.H. Siewerdsen|title=MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery|conf=spie2016|doi=doi:10.1117/12.2208621}}
 
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{{iacl-pub|author=A. Lang, A. Carass, O. Al-Louzi, P. Bhargava, S.D. Solomon, P.A. Calabresi, and J.L. Prince|title=Combined registration and motion correction of longitudinal retinal OCT data|conf=spie2016|pdf=proceedings/iacl/2016/LanxSPIE16-OCT_Registration_Motion_Correction.pdf|doi=10.1117/12.2217157}}
 
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{{iacl-pub|author=B.J. Antony, M. Chen, A. Carass, B.M. Jedynak, O. Al-Louzi, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=Voxel Based Morphometry in Optical Coherence Tomography: Validation & Core Findings|conf=spie2016|pdf=proceedings/iacl/2016/AntxSPIE16-VBM.pdf|doi=10.1117/12.2216096}}
 
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{{iacl-pub|author=B.J. Antony, A. Lang, E.K. Swingle, O. Al-Louzi, A. Carass, S.D. Solomon, P.A. Calabresi, S. Saidha, and J.L. Prince|title=Simultaneous Segmentation of Retinal Surfaces and Microcystic Macular Edema in SDOCT Volumes|conf=spie2016|pdf=proceedings/iacl/2016/AntxSPIE16-MME_Segmentation.pdf|doi=10.1117/12.2214676}}
 
  
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{{PubPage_2014}}
  
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{{h4|2015}}
 
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{{iacl-pub|author=B. Ibragimov, J.L. Prince, E.Z. Murano, J. Woo, M. Stone, B. Likar, F. Pernuš, and T. Vrtovec|title=Segmentation of tongue muscles from super-resolution magnetic resonance images|jrnl=mia|number=20(1):198-207|when=2015|doi=10.1016/j.media.2014.11.006}}
 
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{{iacl-pub|author=J. Woo, J. Lee, E.Z. Murano, F. Xing, M. Al-Talib, M. Stone, and J.L. Prince|title=A high-resolution atlas and statistical model of the vocal tract from structural MRI|journal=Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization|number=3(1):1-14|when=2015|doi=10.1080/21681163.2014.933679}}
 
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{{iacl-pub|author=M. Bilgel, A. Carass, S.M. Resnick, D.F. Wong, and J.L. Prince|title=Deformation field correction for spatial normalization of PET images|jrnl=ni|number=119:152-163|when=2015|doi=10.1016/j.neuroimage.2015.06.063}}
 
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{{iacl-pub|author=S. Roy, Q. He, E. Sweeney, A. Carass, D.S. Reich, J.L. Prince, and D.L. Pham|title=Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation|journal=IEEE Journal of Biomedical and Health Informatics|number=19(5):1598-1609|when=2015|doi=10.1109/JBHI.2015.2439242}}
 
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{{iacl-pub|author=C. Ye, Z. Yang, S.H. Ying, and J.L. Prince|title=Segmentation of the Cerebellar Peduncles Using a Random Forest Classifier and a Multi-object Geometric Deformable Model: Application to Spinocerebellar Ataxia Type 6|journal=Neuroinformatics|number=13(3):367-381|when=2015|doi=10.1007/s12021-015-9264-7}}
 
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{{iacl-pub|author=J. Oh, E.S. Sotirchos, S. Saidha, A. Whetstone, M. Chen, S.D. Newsome, K. Zackowski, L.J. Balcer, E. Frohman, J.L. Prince, M. Diener-West, D.S. Reich, and P.A. Calabresi|title=Relationships between quantitative spinal cord MRI and retinal layers in multiple sclerosis|journal=Neurology|number=84(7): 720-728|when=2015|doi=10.​1212/​WNL.​0000000000001257}}
 
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{{iacl-pub|author=S Roy, A Carass, J.L. Prince, and D.L. Pham|title=Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions|journal=Machine Learning in Medical Imaging in Lecture Notes in Computer Science|number=9352:194-202|when=2015|doi=10.1007/978-3-319-24888-2_24}}
 
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{{iacl-pub|author=A. Jog, A. Carass, D.L. Pham, and J.L. Prince|title=Tree-Encoded Conditional Random Fields for Image Synthesis|conf=ipmi2015|doi=10.1007/978-3-319-19992-4_58}}
 
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{{iacl-pub|author=B.M. Jedynak, B. Liu, A. Lang, Y. Gel, and J.L. Prince|title=A computational method for computing an Alzheimer's Disease Progression Score; experiments and validation with the ADNI dataset|journal=Neurobiology of Aging|number=36(S1):S178-S184|when=2015|doi=10.1016/j.neurobiolaging.2014.03.043}}
 
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{{iacl-pub|author=J Woo, M Stone, and J.L. Prince|title=Multimodal Registration via Mutual Information Incorporating Geometric and Spatial Context|jrnl=tip|number=24(2):757-769|when=2015|doi=10.1109/TIP.2014.2387019}}
 
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{{iacl-pub|author=P. Bhargava, A. Lang, O. Al-Louzi, A. Carass, J.L. Prince, P.A. Calabresi, and S. Saidha|title=Applying an open-source segmentation algorithm to different OCT devices in Multiple Sclerosis patients and healthy controls: implications for clinical trials|journal=Multiple Sclerosis International|number=Article ID 136295|when=May 2015|doi=10.1155/2015/136295}}<!--
 
  
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{{iacl-pub|author=G.A. Sigurdsson, Z. Yang, T.D. Tran, J.L. Prince|title=Interpretable exemplar-based shape classification using constrained sparse linear models|conf=spie2015|doi=10.1117/12.2082141}}
 
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{{iacl-pub|author=F. Xing, C. Ye, J. Woo, M.L. Stone, and J.L. Prince|title=Relating speech production to tongue muscle compressions using tagged and high-resolution magnetic resonance imaging|conf=spie2015|doi=10.1117/12.2081652}}
 
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{{iacl-pub|author=A. Jog, A. Carass, D.L. Pham, and J.L. Prince|title=Multi-output decision trees for lesion segmentation in multiple sclerosis|conf=spie2015|doi=10.1117/12.2082157}}
 
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{{iacl-pub|author=M. Chen, A. Jog, A. Carass, and J.L. Prince|title=Using image synthesis for multi-channel registration of different image modalities|conf=spie2015|doi=10.1117/12.2082373}}
 
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{{iacl-pub|author=E.K. Swingle, A. Lang, A. Carass, O. Al-Louzi, J.L. Prince, and P.A. Calabresi|title=Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study|conf=spie2015|doi=10.1117/12.2082164}}
 
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{{iacl-pub|author=A. Lang, A. Carass, O. Al-Louzi, P. Bhargava, S. Saidha, H.S. Ying, P.A. Calabresi, and J.L. Prince|title=Longitudinal graph-based segmentation of macular OCT using fundus alignment|conf=spie2015|doi=10.1117/12.2077713}}
 
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{{iacl-pub|author=A. Lang, A. Carass, E.K. Swingle, O. Al-Louzi, P. Bhargava, S. Saidha, H.S. Ying, P.A. Calabresi, and J.L. Prince|title=[[Automatic segmentation of microcystic macular edema in OCT]]|jrnl=bmoe|number=6(1):155-169|when=2015|doi=10.1364/BOE.6.000155}}
 
  
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{{PubPage_2012}}
  
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{{h4|2014}}
 
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{{iacl-pub|author=J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince|title=[[Determining Functional Units of Tongue Motion via Graph-regularized Sparse Non-negative Matrix Factorization]]|conf=miccai2014|doi=10.1007/978-3-319-10470-6_19}}
 
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{{iacl-pub|author=J. Lee, J. Woo, F. Xing, E. Murano, M. Stone, and J.L. Prince|title=Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI|journal=Computerized Medical Imaging and Graphics|number=38(8):714-724|when=2014|doi=10.1016/j.compmedimag.2014.07.004}}
 
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{{iacl-pub|author=J. Woo, M. Stone, Y. Suo, E.Z. Murano, and J.L. Prince|title=Tissue-Point Motion Tracking in the Tongue From Cine MRI and Tagged MRI|journal=Journal of Speech, Language, and Hearing Research|number=57(2):S626-S636|when=2014|doi=10.1044/2014_JSLHR-S-12-0208}}
 
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{{iacl-pub|author=S. Roy, W.-T. Wang, A. Carass, J.L. Prince, J.A. Butman, and D.L. Pham|title=[[PET Attenuation Correction using Synthetic CT from Ultrashort Echo-time MRI|PET Attenuation Correction Using Synthetic CT from Ultrashort Echo-Time MR Imaging]]|journal=Jrnl. of Nuclear Medicine|number=55:1-7|when=2014|doi=10.2967/jnumed.114.143958}}
 
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{{iacl-pub|author=J.V. Stough, J. Glaister, C. Ye, S.H. Ying, J.L. Prince, and A. Carass|title=[[Automatic method for thalamus parcellation using multi-modal feature classification]]|conf=miccai2014|pdf=/proceedings/iacl/2014/StoxMICCAI14-Thalamus_Parcellation.pdf|doi=10.1007/978-3-319-10443-0_22}}
 
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{{iacl-pub|author=Z. Yang, S. Zhong, A. Carass, S. Ying, and J.L. Prince |title=[[Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression]]|conf=mlmi2014|doi=10.1007/978-3-319-10581-9_9}}
 
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{{iacl-pub|author=S. Roy, A. Carass, J.L. Prince, and D.L. Pham|title=Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation|conf=mlmi2014|doi=10.1007/978-3-319-10581-9_31}}
 
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{{iacl-pub|author=M. Bilgel, A. Carass, S.M. Resnick, D.F. Wong, J.L. Prince|title=[[Deformation field correction for spatial normalization of PET images using a population-derived partial least squares model|Deformation Field Correction for Spatial Normalization of PET Images Using a Population-Derived Partial Least Squares Model]]|conf=mlmi2014|doi=10.1007/978-3-319-10581-9_25}}
 
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{{iacl-pub|author=M. Bilgel, Y. An, A. Lang, J. Prince, L. Ferrucci, B. Jedynak, and S.M. Resnick|title=Trajectories of Alzheimer disease-related cognitive measures in a longitudinal sample|journal=Alzheimer’s & Dementia|number=10(6):735–742|when=2014|doi=/10.1016/j.jalz.2014.04.520}}
 
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{{iacl-pub|author=J. Oh, M. Seigo, S. Saidha, E. Sotirchos, K. Zackowski, M. Chen, J.L. Prince, M. Diener-West, P.A. Calabresi, and D.S. Reich|title=Spinal Cord Normalization in Multiple Sclerosis|journal=Journal of NeuroImaging|number=''In Press''|when=2014|doi=10.1111/jon.12097}}
 
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{{iacl-pub|author=N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham|title=Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation|jrnl=hbm|number=35(7):3385-3401|when=2014|doi=10.1002/hbm.22409}}
 
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{{iacl-pub|author=M.E. Ranta, M. Chen, D. Crocetti, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky|title=Automated MRI parcellation of the frontal lobe|jrnl=hbm|number=35(5):2009-2026|when=2014|doi=10.1002/hbm.22309}}
 
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{{iacl-pub|author=P.A. Nyquist, M.S. Bilgel, R. Gottesman, L.R. Yanek, T.F. Moy, L.C. Becker, J. Cuzzocreo, J. Prince, D.M. Yousem, D.M. Becker, B.G. Kral, and D. Vaidya|title=Extreme Deep White Matter Hyperintensity Volumes Are Associated with African American Race|journal=Cerebrovascular Diseases|number=37(4):244-250|when=2014|doi=10.1159/000358117}}
 
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{{iacl-pub|author=A. Jog, A. Carass, D.L. Pham, and J.L. Prince|title=Random Forest FLAIR reconstruction from T1, T2, and PD-weighted MRI|conf=isbi2014|doi=10.1109/ISBI.2014.6868061}}
 
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{{iacl-pub|author=S. Roy, Q. He, A. Jog, A. Carass, J.L. Prince, and D.L. Pham|title=Example based lesion segmentation|conf=spie2014|doi=10.1117/12.2043917}}
 
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{{iacl-pub|author=S. Roy, A. Carass, A. Jog, J.L. Prince, and J. Lee|title=MR to CT registration of brains using image synthesis|conf=spie2014|doi=10.1117/12.2043954}}
 
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{{iacl-pub|author=C. Ye, A. Carass, E. Murano, M. Stone, and J.L. Prince|title=[[A Bayesian Approach to Distinguishing Interdigitated Muscles in the Tongue from Limited Diffusion Weighted Imaging]]|when=MICCAI Workshop on Bayesian and Graphical Models for Biomedical Imaging (BAMBI 2014), Boston, MA, September 18, 2014|doi=10.1007/978-3-319-12289-2_2}}
 
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{{iacl-pub|author=A. Jog, A. Carass, and J.L. Prince|title=Improving Magnetic Resonance Resolution with Supervised Learning|conf=isbi2014|doi=10.1109/ISBI.2014.6868038}}
 
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{{iacl-pub|author=G.A. Sigurdsson and J.L. Prince|title=Smoothing fields of weighted collections with applications to diffusion MRI processing|conf=spie2014|doi=10.1117/12.2043959}}
 
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{{iacl-pub|author=N. Kuo, E. Dehghan, A. Deguet, E. C. Burdette, G. Fichtinger, J. L. Prince, D. Y. Song, J. Lee|title=An image-guidance system for dynamic dosimetry in prostate brachytherapy using ultrasound and fluoroscopy|jrnl=mp|number=41(9):091712|when=2014|doi=10.1118/1.4893761}}
 
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{{iacl-pub|author=M.A.L. Bell, N.P. Kuo, D.Y. Song, J. Kang, E.M. Boctor|title=In vivo photoacoustic imaging of prostate brachytherapy seeds|conf=spie2014|number=894348-894348-10|when=2014|doi=10.1117/12.2040817}}
 
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{{iacl-pub|author=M.A.L. Bell, N. Kuo, D.Y. Song, E.M. Boctor|title=Short-lag spatial coherence beamforming of photoacoustic images for enhanced visualization of prostate brachytherapy seeds|jrnl=bmoe|number=4(10):1964-1977|when=2014|doi=10.1364/BOE.4.001964}}
 
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{{iacl-pub|author=M. Chen, A. Lang, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass|title=[[Analysis of macular OCT images using deformable registration]]|jrnl=bmoe|number=5(7):2196-2214|when=2014|doi=10.1364/BOE.5.002196|pdf=proceedings/iacl/2014/ChexBOE14-Analysis_Macular_OCT_Deformable_Registration.pdf}}
 
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{{iacl-pub|author=A. Carass, A. Lang, M. Hauser, P.A. Calabresi, H.S. Ying, and J.L. Prince|title=[[MGDM segmentation of macular OCT images|Multiple-object geometric deformable model for segmentation of macular OCT]]|jrnl=bmoe|number=5(4):1062-1074|when=2014|doi=10.1364/BOE.5.001062|pdf=proceedings/iacl/2014/CarxBOE14-MGDM_OCT_Segmentation.pdf}}
 
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{{iacl-pub|author=A. Lang, A. Carass, P.A. Calabresi, H.S. Ying, and J.L. Prince|title=An adaptive grid for graph-based segmentation in macular cube OCT|conf=spie2014|doi=10.1117/12.2043040}}
 
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{{iacl-pub|author=E.K. Swingle, A. Carass, A. Lang, P.A. Calabresi, H.S. Ying, and J.L. Prince|title=Microcystic macular edema detection in retina OCT images|conf=spie2014|doi=10.1117/12.2043910}}
 
  
  
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{{h4|2013}}
+
{{PubPage_2011}}
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{{iacl-pub|author=F. Xing, J. Woo, E.Z. Murano, J. Lee, M. Stone, and J.L. Prince|title=3D Tongue Motion from Tagged and Cine MR Images|conf=miccai2013|doi=10.1007/978-3-642-40760-4_6|pdf=/proceedings/iacl/2013/XinxMICCAI13-3D_Tongue_Motion_MR_Images.pdf}}
 
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{{iacl-pub|author=J. Lee, J. Woo, F. Xing, E.Z. Murano, M. Stone, and J.L. Prince|title=Semi-automatic segmentation of the tongue for 3D motion analysis with dynamic MRI|conf=isbi2013|doi=10.1109/ISBI.2013.6556811|pdf=/proceedings/iacl/2013/LeexISBI13-Semi-automatic_segmentation_of_tongue.pdf}}
 
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{{iacl-pub|author=F. Xing, E.Z. Murano, J. Lee, J. Woo, M. Stone, and J.L. Prince|title=MRI Analysis of 3D normal and Post-glossectomy Tongue Motion in Speech|conf=isbi2013|doi=10.1109/ISBI.2013.6556600|pdf=/proceedings/iacl/2013/XinxISBI13-MRI_of_tongue_motion_in_speech.pdf}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=[[Magnetic Resonance Image Example Based Contrast Synthesis|Magnetic Resonance Image Example Based Contrast Synthesis]]|jrnl=tmi|number=32(12):2348-2363|when=2013|doi=10.1109/TMI.2013.2282126|pdf=/proceedings/iacl/2013/RoyxTMI13-MIMECS.pdf}}
 
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{{iacl-pub|author=M. Chen, A. Carass, J. Oh, G. Nair, D.L. Pham, D.S. Reich, and J.L. Prince|title=[[Automatic magnetic resonance spinal cord segmentation|Automatic Magnetic Resonance Spinal Cord Segmentation with Topology Constraints for Variable Fields of View]]|jrnl=ni|number=83:1051-1062|when=2013|doi=10.1016/j.neuroimage.2013.07.060|pdf=/proceedings/iacl/2013/ChexNI13-Spinal_cord_segmentation_topology_constraints_FOV.pdf}}
 
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{{iacl-pub|author=A. Jog, S. Roy, J.L. Prince, and A. Carass|title=[http://hdl.handle.net/10380/3441 MR Brain Segmentation using Decision Trees]|when=MICCAI Grand Challenge on MR Brain Image Segmentation ([http://mrbrains13.isi.uu.nl/ MRBrainS13]), Nagoya, Japan, September 26, 2013}}
 
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{{iacl-pub|author=S. Roy, A. Jog, A. Carass, and J.L. Prince|title=Atlas Based Intensity Transformation of Brain MR Images|when=MICCAI Third International Workshop on Multimodal Brain Image Analysis (MBIA 2013)|doi=10.1007/978-3-319-02126-3_6}}
 
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{{iacl-pub|author=Z. Yang, J.A. Bogovic, C. Ye, A. Carass, S.H. Ying, and J.L. Prince|title=Automated Cerebellar Lobule Segmentation using Graph Cuts|when=MICCAI Challenge Workshop on Segmentation: Algorithms, Theory and Applications (SATA 2013), Nagoya, Japan, September 26, 2013|pdf=/proceedings/iacl/2013/YanxMICCAI13-Automated_cerebellar_lobule_segmentation.pdf}}
 
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{{iacl-pub|author=A.K. Knutsen, E. Magrath, J. McEntee, J.L. Prince, P. Bayly, J. Butman, and D.L. Pham|title=Improved measurement of Brain Deformation during a Mild Acceleration using Tagged MRI|journal=Journal of Neurotrauma|number=30(15):A114-A115|when=August 2013|doi=10.1016/j.jbiomech.2014.09.010}}
 
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{{iacl-pub|author=J.A. Bogovic, P.L. Bazin, S.H. Ying, and J.L. Prince|title=Automated Segmentation of the Cerebellar Lobules using Boundary Specific Classification and Evolution|conf=ipmi2013|doi=10.1007/978-3-642-38868-2_6|pdf=/proceedings/iacl/2013/BogxIPMI13-ACCLAIM.pdf}}
 
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{{iacl-pub|author=J. Stough, C. Ye, S.H. Ying, and J.L. Prince|title=Thalamic Parcellation from Multi-Modal Data using Random Forest Learning|conf=isbi2013|doi=10.1109/ISBI.2013.6556609|pubmed=24145869|pmcid=3799867|pdf=/proceedings/iacl/2013/StouxISBI13-Thalmic_parcellation_using_random_forest.pdf}}
 
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{{iacl-pub|author=C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince|title=Segmentation of the Complete Superior Cerebellar Peduncles using a Multi-object Geometric Deformable Model|conf=isbi2013|doi=10.1109/ISBI.2013.6556409|pdf=/proceedings/iacl/2013/YexISBI13-Segmentation_of_Cerebellar_Peduncles.pdf}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Patch Based Intensity Normalization of Brain MR Images|conf=isbi2013|doi=10.1109/ISBI.2013.6556482|pubmed=24443685|pmcid=3892712|pdf=/proceedings/iacl/2013/RoyxISBI13-Intensity_normalization_of_brain_MRI.pdf}}
 
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{{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince|title=Longitudinal Intensity Normalization in the presence of Multiple Sclerosis Lesions|conf=isbi2013|doi=10.1109/ISBI.2013.6556791|pdf=/proceedings/iacl/2013/RoyxISBI13-Longitudinal_Intensity_Normalization_Multiple_Sclerosis_Lesions.pdf}}
 
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{{iacl-pub|author=A. Jog, S. Roy, A. Carass, and J.L. Prince|title=Magnetic Resonance Image Synthesis through Patch Regression|conf=isbi2013|doi=10.1109/ISBI.2013.6556484|pubmed=|pmcid=3892700|pdf=/proceedings/iacl/2013/JogxISBI13-Magnetic_resonance_image_synthesis.pdf}}
 
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{{iacl-pub|author=Z. Yang, A. Carass, and J.L. Prince|title=Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex|conf=isbi2013|doi=10.1109/ISBI.2013.6556650|pubmed=24301715|pmcid=3842598|pdf=/proceedings/iacl/2013/YanxISBI13-Covariance_shrinking_with_application_to_gyral_labeling.pdf}}
 
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{{iacl-pub|author=M. Bilgel, S. Roy, A. Carass, P.A. Nyquist, and J.L. Prince|title=Automated Anatomical Labeling of the Cerebral Arteries using Belief Propagation|conf=spie2013|doi=10.1117/12.2006460|pdf=/proceedings/iacl/2013/BilxSPIE13-Automated_anatomical_labeling_of_cerebral_arteries.pdf}}
 
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{{iacl-pub|author=M. Chen, A. Carass, D.S. Reich, P.A. Calabresi, D.L. Pham, and J.L. Prince|title=Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis|conf=spie2013|doi=10.1117/12.2007150|pdf=/proceedings/iacl/2013/ChexSPIE13-Voxel-wise_dispacement_in_classification_multiple_sclerosis.pdf}}
 
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{{iacl-pub|author=A. Jog, S. Roy, A. Carass, and J.L. Prince|title=Pulse Sequence based Multi-acquisition MR Intensity Normalization|conf=spie2013|doi=10.1117/12.2007062|pdf=/proceedings/iacl/2013/JogxSPIE13-Pulse_sequence_intensity_normalization.pdf}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches|conf=spie2013|doi=10.1117/12.2006682|pdf=/proceedings/iacl/2013/RoyxSPIE13-Longitudinal_intensity_of_MRI_using_patches.pdf}}
 
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{{iacl-pub|author=C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince|title=Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model|conf=spie2013|doi=10.1117/12.2006119|pdf=/proceedings/iacl/2013/YexSPIE13-Parcellation_of_thalmus_using_diffusion_tensor_images_MGDM.pdf}}
 
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{{iacl-pub|author=J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying|title=Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters|jrnl=ni|number=64(1):616-629|when=2013|doi=10.1016/j.neuroimage.2012.08.075|pubmed=22975160|pdf=/proceedings/iacl/2013/BogxNI13-Cerebellum_parcellation_protocol.pdf}}
 
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{{iacl-pub|author=Z. Yang, J.A. Bogovic, A. Carass, M. Ye, P.C. Searson, and J.L. Prince|title=Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model (MGDM)|conf=spie2013|doi=10.1117/12.2006603|pdf=/proceedings/iacl/2013/YanxSPIE13-Automatic_cell_segmentation_fluorescence_images.pdf}}
 
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{{iacl-pub|author=J.A. Bogovic, J.L. Prince, and P.-L. Bazin|title=A Multiple Object Geometric Deformable Model for Image Segmentation|jrnl=cviu|number=117(2):145-157|when=2013|doi=10.1016/j.cviu.2012.10.006|pubmed=23316110|pdf=/proceedings/iacl/2013/BogxCVIU13-MGDM.pdf}}
 
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{{iacl-pub|author=D. Song, Y. Le, J. Lee, N. Kuo, A. Robinson, A. Deguet, E. Burdette, G. Fichtinger, and J.L. Prince|title=Dynamic Dosimetry Using Ultrasound-Fluoroscopy Registration Identifies Cold Spots Intraoperatively During LDR Prostate Brachytherapy|journal=International Journal of Radiation Oncology Biology Physics|number=87(2):S379|when=October 2013|doi=10.1016/j.ijrobp.2013.06.994}}
 
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{{iacl-pub|author=N. Kuo, E. Dehgan, A. Deguet, D.Y. Song, J.L. Prince, and J. Lee|title=A dynamic dosimetry system for prostate brachytherapy|conf=spie2013|doi=10.1117/12.2008097|pdf=/proceedings/iacl/2013/KuoxSPIE13-Dynamic_Dosimetry_system_for_brachytherapy.pdf}}
 
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{{iacl-pub|author=A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince|title=[[Retinal layer segmentation of macular OCT images|Retinal layer segmentation of macular OCT images using boundary classification]]|jrnl=bmoe|number=4(7):1133-1152|when=2013|doi=10.1364/BOE.4.001133|pmcid=3704094|pdf=proceedings/iacl/2013/LanxBOE13-Retinal_layer_OCT.pdf}}
 
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{{iacl-pub|author=M. Chen, A. Lang, E. Sotirchos, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass|title=Deformable Registration of Macular OCT Using A-mode Scan Similarity|number=476-479|conf=isbi2013|doi=10.1109/ISBI.2013.6556515|pmcid=3892764|pdf=proceedings/iacl/2013/ChexISBI13-Macular_OCT_using_A-mode_scan_similarity.pdf}}
 
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{{iacl-pub|author=A. Lang, A. Carass, E. Sotirchos, and J.L. Prince|title=Segmentation of Retinal OCT Images using a Random Forest Classifier|conf=spie2013|doi=10.1117/12.2006649|pdf=proceedings/iacl/2013/LanxSPIE13-Segmentation_of_retinal_OCT_images_forest_classifier.pdf}}
 
  
  
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{{h4|2012}}
 
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{{iacl-pub|author=F. Xing, J. Lee, E.Z. Murano, J. Woo, M. Stone, and J.L. Prince|title=Estimating 3D Tongue Motion with MR Images|pub=Asilomar Conference on Signals, Systems, and Computers|loc=Pacific Grove, California|when=November 2012}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=System for Integrated Neuroimaging Analysis and Processing of Structure|journal=Neuroinformatics|number=11(1):91-103|when=2012|doi=10.1007/s12021-012-9159-9|pubmed=22932976|pdf=/proceedings/iacl/2012/LanxNI12c-SINAPS.pdf}}
 
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{{iacl-pub|author=P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross|title=Brain metabolite alterations and cognitive dysfunction in early Huntington's disease|journal=Movement Disorders|number=27(7):895-902|when=June 2012|doi=10.1002/mds.25010|pubmed=22649062}}
 
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{{iacl-pub|author=S. Roy, A. Carass,  P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Consistent Segmentation using a Rician Classifier|jrnl=mia|number=16(2):524-535|when=2012|doi=doi:10.1016/j.media.2011.12.001|pubmed=22204754|pdf=/proceedings/iacl/2012/RoyxMIA13-Rician_Classifier.pdf}}
 
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{{iacl-pub|author=Z. Yang, A. Carass, and J.L. Prince|title=Automatic Sulcal Curve Extraction with MRF Based Shape Prior|conf=isbi2012|doi=10.1109/ISBI.2012.6235573|pdf=/proceedings/iacl/2012/YanxISBI13-Automatic_sulcal_curve_extraction.pdf}}
 
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{{iacl-pub|author=C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying|title=Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images|conf=isbi2012|doi=10.1109/ISBI.2012.6235758|pdf=/proceedings/iacl/2012/YexISBI12-Segmentation_of_dentate_nucleus_using_diffusion_weighted_images.pdf}}
 
−
{{iacl-pub|author=B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince|title=Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI|jrnl=ni|number=59(3):2175–2186|when=2012|doi=10.1016/j.neuroimage.2011.10.011|pdf=/proceedings/iacl/2012/LanxNI12-Resolution_of_Crossing_Fibers.pdf}}
 
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{{iacl-pub|author=Z. Yang, A. Carass, C. Chen, and J.L. Prince|title=Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction|conf=spie2012|doi=10.1117/12.910552|pdf=/proceedings/iacl/2012/YanxSPIE12-Cortical_surface_labeling_and_sulcal_curve_extraction.pdf}}
 
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{{iacl-pub|author=X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince|title=Topology Preserving Brain Tissue Segmentation Using Graph Cuts|conf=mmbia2012|doi=10.1109/MMBIA.2012.6164754|pdf=/proceedings/iacl/2012/LiuxWMMBIA12-Topology_preserving_using_graph_cuts.pdf}}
 
−
{{iacl-pub|author=B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=System for Integrated Neuroimaging Analysis and Processing of Structure|journal=Neuroinformatics|number=11(1):91-103|when=2012|doi=10.1007/s12021-012-9159-9|pubmed=22932976|pdf=/proceedings/iacl/2012/LanxNI12c-SINAPS.pdf}}
 
−
{{iacl-pub|author=P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross|title=Brain metabolite alterations and cognitive dysfunction in early Huntington's disease|journal=Movement Disorders|number=27(7):895-902|when=June 2012|doi=10.1002/mds.25010|pubmed=22649062}}
 
−
{{iacl-pub|author=S. Roy, A. Carass,  P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Consistent Segmentation using a Rician Classifier|jrnl=mia|number=16(2):524-535|when=2012|doi=doi:10.1016/j.media.2011.12.001|pubmed=22204754|pdf=/proceedings/iacl/2012/RoyxMIA13-Rician_Classifier.pdf}}
 
−
{{iacl-pub|author=Z. Yang, A. Carass, and J.L. Prince|title=Automatic Sulcal Curve Extraction with MRF Based Shape Prior|conf=isbi2012|doi=10.1109/ISBI.2012.6235573|pdf=/proceedings/iacl/2012/YanxISBI13-Automatic_sulcal_curve_extraction.pdf}}
 
−
{{iacl-pub|author=C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying|title=Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images|conf=isbi2012|doi=10.1109/ISBI.2012.6235758|pdf=/proceedings/iacl/2012/YexISBI12-Segmentation_of_dentate_nucleus_using_diffusion_weighted_images.pdf}}
 
−
{{iacl-pub|author=B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince|title=Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI|jrnl=ni|number=59(3):2175–2186|when=2012|doi=10.1016/j.neuroimage.2011.10.011|pdf=/proceedings/iacl/2012/LanxNI12-Resolution_of_Crossing_Fibers.pdf}}
 
−
{{iacl-pub|author=Z. Yang, A. Carass, C. Chen, and J.L. Prince|title=Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction|conf=spie2012|doi=10.1117/12.910552|pdf=/proceedings/iacl/2012/YanxSPIE12-Cortical_surface_labeling_and_sulcal_curve_extraction.pdf}}
 
−
{{iacl-pub|author=X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince|title=Topology Preserving Brain Tissue Segmentation Using Graph Cuts|conf=mmbia2012|doi=10.1109/MMBIA.2012.6164754|pdf=/proceedings/iacl/2012/LiuxWMMBIA12-Topology_preserving_using_graph_cuts.pdf}}
 
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{{iacl-pub|author=B.A. Landman, A.L. Asman, A.G. Scoggins, J.A. Bogovic, F. Xing, and J.L. Prince|title=Robust Statistical Fusion of Image Labels|jrnl=tmi|number=31(2):512-522|when=February 2012|doi=10.1109/TMI.2011.2172215|pubmed=22010145|pmcid=3262958|pdf=/proceedings/iacl/2012/LanxTMI12-Robust_Statistical_Fusion.pdf}}
 
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{{iacl-pub|author=F. Xing, A.J. Asman, J.L. Prince, and B.A. Landman|title=Finding Seeds for Segmentation Using Statistical Fusion|conf=spie2012|doi=10.1117/12.911524|pdf=/proceedings/iacl/2012/XinxSPIE12-segmentation_using_statistical_fusion.pdf}}
 
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{{iacl-pub|author=J. Woo, Y. Bai, S. Roy, E. Murano, M. Stone, and J.L. Prince|title=Super-resolution reconstruction for tongue MR images|conf=spie2012|doi=10.1117/12.911445|pdf=/proceedings/iacl/2012/WooxSPIE12-Super-resolution_tongue_MRI.pdf}}
 
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{{iacl-pub|author=B.A. Landman, A.J. Asman, A.G. Scoggins, J.A. Bogovic, J.A. Stein, and J.L. Prince|title=Foibles, follies, and fusion: Web-based collaboration for medical image labelling|journal=NeuroImage|number=59(1):530–539|when=January 2012|doi=10.1016/j.neuroimage.2011.07.085|pubmed=21839181|pdf=/proceedings/iacl/2012/LanxNI12-Foibles_Follies_and_Fusion.pdf}}
 
−
{{iacl-pub|author=D. Song, Y. Le, J. Lee, N. Kuo, A. Robinson, A. Deguet, E. Burdette, G. Fichtinger, and J.L. Prince|title=Dynamic Dosimetry Using Ultrasound-Fluoroscopy Registration Identifies Cold Spots Intraoperatively During LDR Prostate Brachytherapy|journal=International Journal of Radiation Oncology Biology Physics|number=87(2):S379|when=October 2013|doi=10.1016/j.ijrobp.2013.06.994}}
 
−
{{iacl-pub|author=N. Kuo, E. Dehgan, A. Deguet, D.Y. Song, J.L. Prince, and J. Lee|title=A dynamic dosimetry system for prostate brachytherapy|conf=spie2013|doi=10.1117/12.2008097|pdf=/proceedings/iacl/2013/KuoxSPIE13-Dynamic_Dosimetry_system_for_brachytherapy.pdf}}
 
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{{iacl-pub|author=N. Kuo, H.J. Kang, D.Y. Song, J.U. Kang, and E.M. Boctor|title=Real-time Photoacoustic Imaging of Prostate Brachytherapy Seeds Using a Clinical Ultrasound System|pub=Journal of Biomedical Optics|number=17(6):066005|when=2012|doi=10.1117/1.JBO.17.6.066005}}
 
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{{iacl-pub|author=E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, Y. Le, E.C. Burdette, D.Y. Song, J.L. Prince, and G. Fichtinger|
 
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title=Ultrasound-Fluoroscopy Registration for Prostate Brachytherapy Dosimetry|pub=Medical Image Analysis|when=2012|number=16(7):1347-1358|doi=10.1016/j.media.2012.06.001|pdf=/proceedings/iacl/2012/DehxMIA12-Ultrasound-Fluoro_Brachytherapy.pdf}}
 
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{{iacl-pub|author=J. Lee, J.W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A.J. Khanna, J.L. Prince, and J.H. Siewerdsen|title=Volume-of-Change Cone-Beam CT for Image-Guided Surgery|jrnl=pmb|when=2012|number=57(15):64-77|doi=10.1088/0031-9155/57/15/4969|pdf=/proceedings/iacl/2012/LeexPhysMedBio12-Cone_CT.pdf}}
 
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{{iacl-pub|author=J. Lee, J.W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A.J. Khanna, J.L. Prince, and J.H. Siewerdsen|title=Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery|conf=spie2012|doi=10.1117/12.910850|pdf=/proceedings/iacl/2012/LeexSPIE12-Imaging_from_sparse_scan_data.pdf}}
 
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{{iacl-pub|author=H.J. Kang, N. Kuo, X. Guo, D. Song, J.U. Kang, and E.M. Boctor|title=Software Framework of a Real-time Pre-beamformed RF Data Acquisition of an Ultrasound Research Scanner|conf=spie2012|doi=10.1117/12.911551}}
 
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{{iacl-pub|author=S.Vyas, S. Su, R. Kim, N. Kuo, R.H. Taylor, J.U. Kang, and E.M. Boctor|title=Intraoperative Ultrasound to Stereocamera Registration Using Interventional Photoacoustic Imaging|conf=spie2012|doi=10.1117/12.912341}}
 
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{{iacl-pub|author=N. Kuo, A. Deguet, D.Y. Song, E.C. Burdette, J.L. Prince, and J. Lee|title=Automatic segmentation of radiographic fiducial and seeds from X-ray images in prostate brachytherapy|jrnl=mep|when=2012|number=34(1):64-77|doi=10.1016/j.medengphy.2011.06.019|pubmed=21802975|pmcid=3209498|pdf=/proceedings/iacl/2012/KuoxMedEngPhys12-Automatic_Segmentation_Radiographic_Fiducial.pdf}}
 
  
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{{PubPage_2010}}
  
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{{h4|2011}}
 
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{{iacl-pub|author=F. Xing, S. Soleimanifard, B.A. Landman, and J.L. Prince|title=Statistical Fusion of Continuous Labels: Identification of Cardiac Landmarks|conf=spie2011|doi=10.1117/12.877884|pubmed=21660225|pmcid3110005|pdf=/proceedings/iacl/2011/XinxSPIE11-Statistical_fusion_of_continuous_labels.pdf}}
 
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{{iacl-pub|author=B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee and A.W. Toga, J.L. Prince, and S.H. Ying|title=MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2|journal=The Cerebellum|number=1-8|when=2011|doi=10.1007/s12311-011-0308-8|pubmed=21850525}}
 
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{{iacl-pub|author=P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham|title=Direct segmentation of the major white matter tracts in diffusion tensor images|jrnl=ni|number=58(2):458-468|when=September 2011|doi=doi:10.1016/j.neuroimage.2011.06.020|pubmed=21718790|pdf=/proceedings/iacl/2011/BazxNI11-Segmentation_White_Matter.pdf}}
 
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{{iacl-pub|author=A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis|jrnl=ni|when=June 2011|number=56(4):1982-1992|doi=10.1016/j.neuroimage.2011.03.045|pubmed=21458576|pmcid=3105165}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham|title=Segmentation of brain images  using adaptive atlases with application to ventriculomegaly|conf=ipmi2011|doi=10.1007/978-3-642-22092-0_1|pubmed=21761641|pmcid=3478153}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=A Compressed Sensing Approach For MR Tissue Contrast Synthesis|conf=ipmi2011|doi=10.1007/978-3-642-22092-0_31|pubmed=21761671|pmcid=3398746|pdf=/proceedings/iacl/2011/RoyxIPMI11-Compressed_sensing_MR_tissue_contrast_synthesis.pdf}}
 
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{{iacl-pub|author=H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori|title=A framework on surface-based connectivity quantification for the human brain|journal=Journal of Neuroscience Methods|when=April 2011|number=197(2):324-332|doi=doi:10.1016/j.jneumeth.2011.02.017|pubmed=21396960|pmcid=3081907|pdf=/proceedings/iacl/2011/HuaxJNM11-Framework_Connectivity_Quantification_Brain.pdf}}
 
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{{iacl-pub|author=A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince|title=Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation|conf=hbm2011}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, D.L. Pham|title=Fiber tractography and tract segmentation in multiple sclerosis lesions|conf=isbi2011|doi=10.1109/ISBI.2011.5872682}}
 
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{{iacl-pub|author=M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince|title=Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images|conf=isbi2011|doi=10.1109/ISBI.2011.5872741}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Compressed Sensing Based Intensity Non-Uniformity Correction|conf=isbi2011|doi=10.1109/ISBI.2011.5872364|pdf=/proceedings/iacl/2011/RoyxISBI11-Compressed_sensing_based_intensity.pdf}}
 
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{{iacl-pub|author=M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince|title=Distance Transforms in Multi Channel MR Image Registration|conf=spie2011|doi=10.1117/12.878367|pdf=/proceedings/iacl/2011/ChexSPIE11-Distace_transforms_multi_channel_MRI_registration.pdf}}
 
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{{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince|title=Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches|conf=spie2011|doi=10.1117/12.877466|pdf=/proceedings/iacl/2011/RoyxSPIE11-Intensitiy_inhomogeneity_using_patches.pdf}}
 
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{{iacl-pub|author=F.E.A. ElShahaby, B.A. Landman, and J.L. Prince |title=Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing|conf=spie2011|doi=10.1117/12.878382|pubmed=21552469|pmcid=3087384}}
 
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{{iacl-pub|author=B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl|title=Multi-parametric neuroimaging reproducibility: A 3-T resource study|jrnl=ni|number=54(4):2854–2866|when=2011|doi=10.1016/j.neuroimage.2010.11.047|pubmed=21094686|pmcid=3020263|pdf=/proceedings/iacl/2011/LaxNI11-Multi-parametric_neuroimaging_reproducibility.pdf}}
 
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{{iacl-pub|author=A.J. Asman, A.G. Scoggins, J.L. Prince, and B.A. Landman|title=Foibles, Follies, and Fusion: Assessment of Statistical Label Fusion Techniques for Web-Based Collaborations using Minimal Training|conf=spie2011|doi=10.1117/12.877471|pubmed=21532973|pmcid=3083117|pdf=/proceedings/iacl/2011/AsmxSPIE11-Foibles_follies_and_fusion.pdf}}
 
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{{iacl-pub|author=J. Lee, N. Kuo, A. Deguet, E. Dehghan, D.Y. Song, E.C. Burdette, and J.L. Prince|title=Intraoperative 3-D reconstruction of prostate brachytherapy implants with automatic pose correction|jrnl=pmb|number=56(15):5011-5027|when=2011|doi=10.1088/0031-9155/56/15/022|pubmed=21772077|pdf=/proceedings/iacl/2011/LeexPMB11-APC-REDMAPS.pdf}}
 
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{{iacl-pub|author=E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, E.C. Burdette, D. Song, J.L. Prince, and G. Fichtinger|title=Point-to-volume registration of prostate implants to ultrasound|conf=miccai2011|number=615-622|pubmed=21995080|pmcid=3201745|pdf=/proceedings/iacl/2011/DehxMICCAI11-Point-to-volume_registration_of_prostate_implants.pdf}}
 
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{{iacl-pub|author=J.W. Staymen, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, J.H. Siewerdsen|title=Using prior images with registration in penalized likelihood estimation for CT with sparse data|conf=aapm2011|doi=10.1118/1.3613291}}
 
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{{iacl-pub|author=G.J. Gang*, J. Lee*, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, J.H. Siewerdsen|title=Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance|jrnl=mp|number=38(4):1754-1768|when=2011, *equal contribution|doi=10.1118/1.3560428|pubmed=21626910|pmcid=3069989|pdf=/proceedings/iacl/2011/GanxMedPhys11-Fourier_Domain_Cone-Beam.pdf}}
 
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{{iacl-pub|author=J.W. Stayman, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen|title=Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties|conf=spie2011|doi=10.1117/12.878075|pdf=/proceedings/iacl/2011/StaxSPIE11-Penalized-likelihood_reconstruction_for_sparse_data.pdf}}
 
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{{iacl-pub|author=O. Sadowsky, J. Lee, E.G. Sutter, S.J. Wall, J.L. Prince, and R.H. Taylor|title=Hybrid cone-beam tomographic reconstruction: Incorporation of prior anatomical models to compensate for missing data|jrnl=tmi|number=30(1):69-83|when=January 2011|doi=10.1109/TMI.2010.2060491|pubmed=20667807|pdf=/proceedings/iacl/2011/SadxTMI11-Hybrid_Cone-Beam_Reconstruction.pdf}}
 
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{{iacl-pub|author=J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince|title=REDMAPS: Reduced-dimensionality matching for prostate brachytherapy seed reconstruction|jrnl=tmi|number=30(1):38-51|when=January 2011|doi=10.1109/TMI.2010.2059709|pubmed=20643600|pmcid=3072797|pdf=/proceedings/iacl/2011/LeexTMI11-REDMAPS.pdf}}
 
  
  
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{{h4|2010}}
+
{{PubPage_2009}}
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{{iacl-pub|author=X. Liu and J.L. Prince|title=Shortest path refinement for motion estimation from tagged MR images|jrnl=tmi|number=29(8):1560-1572|when=August 2010|doi=10.1109/TMI.2010.2045509  |pubmed=20304720|pdf=/proceedings/iacl/2010/LiuxTMI10-Shortest_Path_for_MRIs.pdf}}
 
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{{iacl-pub|author=M. Stone, X. Liu, H. Chen, and J.L. Prince|title=A preliminary application of principal components and cluster analysis to internal tongue deformation patterns|journal=Computer Methods in Biomechanics and Biomedical Engineering|number=13(4):493-503|when=August 2010|doi=10.1080/10255842.2010.484809|pubmed=20635265|pmcid=3046779|pdf=/proceedings/iacl/2010/StoxCMBBE10-Cluster_Analysis_Tongue.pdf}}
 
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{{iacl-pub|author=E.Z. Murano, H. Shinagawa, J. Zhuo, R.P. Gullapalli, R.A. Ord, J.L. Prince, and M. Stone|title=Application of diffusion tensor imaging after glossectomy|journal=Otolaryngology - Head and Neck Surgery|number=143(2):304-306|when=August 2010|doi=10.1016/j.otohns.2010.03.012|pubmed=20647140|pmcid=2924629|pdf=/proceedings/iacl/2010/MurxOHNS10-Tensor_Imaging_Glossectomy.pdf}}
 
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{{iacl-pub|author=H.K. Agarwal, J.L. Prince, and K.Z. Abd-Elmoniem|title=Total removal of unwanted harmonic peaks (TruHARP) MRI for single breath-hold high-resolution myocardial motion and strain quantification|jrnl=mrm|number=64(2):574-585|when=August 2010|doi=10.1002/mrm.22403|pubmed=20665800|pdf=/proceedings/iacl/2010/AgaxMRM10-TruHARP_MRI.pdf}}
 
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{{iacl-pub|author=S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince|title=Identification of Myocardial Infarction using Fractional Anisotropy of 3D Strain Tensors|conf=ismrm2010|pdf=/proceedings/iacl/2010/SolxISBI10-Identification_of_myocarial_infarction_3D_strain.pdf}}
 
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{{iacl-pub|author=H.K. Agarwal, S. van Elderen, M. Versluis, A. de Roos, A. Webb, J. Smink, and M. Stuber|title=Navigator techniques for coronary MRA at 7 T|conf=scmr2010|doi=10.1186/1532-429X-12-S1-P49|pdf=/proceedings/iacl/2010/AgaxSCMR10-Navigators-at-7T.pdf}}
 
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{{iacl-pub|author=S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince|title=Visualization of infarction using fractional anisotropy|conf=scmr2010|doi=10.1186/1532-429X-12-S1-P153}}
 
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{{iacl-pub|author=M.S. Tomas, K.Z. Abd-Elmoniem, T. Sasano, E.J. Vonken, A. Youssef, M. Stuber, H.K. Agarwal, S. Soleimanifard, E. Marbán, J.L Prince, T.P. Abraham, and R. Abraham|title=Regional evolution of mechanical dyssynchrony in a closed-chest porcine model of myocardial infarction as assessed by cardiac magnetic resonance|conf=scmr2010|doi=10.1186/1532-429X-12-S1-P59}}
 
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{{iacl-pub|author=A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying|title=Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration|journal=Journal of Neurology|number=257(8):1406-1408|when=August 2010|doi=10.1007/s00415-010-5523-6|pubmed=20354716|pmcid=2963035|pdf=/proceedings/iacl/2010/DuxJoN10-Nucleus_Changes_in_Cerebellar_Degeneration.pdf}}
 
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{{iacl-pub|author=B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham|title=JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis|pub=NCI's NCRI|loc=Washington D.C.|when=June 21-22, 2010}}
 
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{{iacl-pub|author=M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince and S.M. Resnick|title=Longitudinal changes in cortical thickness associated with normal aging|jrnl=ni|number=52(4):1215-1223|when=October 2010|pubmed=20441796|doi=doi:10.1016/j.neuroimage.2010.04.258|pmcid=2910226|pdf=/proceedings/iacl/2010/ThaxNI10-Cortical_thickness_normal_aging.pdf}}
 
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{{iacl-pub|author=K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman|title=Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities|pub=Annual ORNL Biomedical Science and Engineering Conference ([http://www.ornl.gov/bsec_conferences/2010/ BSEC 2010])|when=May 25-26, 2010|loc=Oak Ridge, Tennessee|doi=10.1109/BSEC.2010.5510850|pubmed=21151892|pmcid=2998761}}
 
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{{iacl-pub|author=N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham|title=Cortical thinning in Multiple Sclerosis|conf=hbm2010}}
 
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{{iacl-pub|author=N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich|title=Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation|conf=hbm2010}}
 
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{{iacl-pub|author=J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying|title=Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation|conf=hbm2010}}
 
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{{iacl-pub|author=M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince|title=Multi-Channel Enhancement of the Adaptive Bases Algorithm|conf=hbm2010}}
 
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{{iacl-pub|author=M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince|title=Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit|conf=hbm2010}}
 
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{{iacl-pub|author=C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince|title=A Protocol for Manual Correction of Gyral Based Cortical Labels|conf=hbm2010}}
 
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{{iacl-pub|author=C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince|title=A Java Application for Manually Editing Cortical Labels|conf=hbm2010}}
 
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{{iacl-pub|author=J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein|title=Graph-Theoretical Methods for Statistical Inference on MR Connectome Data|conf=hbm2010}}
 
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{{iacl-pub|author=J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman |title=Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways|conf=ismrm2010}}
 
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{{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince|title=Longitudinal Changes of White Matter Lesions|conf=ismrm2010}}
 
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{{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince|title=MR Contrast Synthesis for Lesion Segmentation|conf=isbi2010|doi=10.1109/ISBI.2010.5490140|pubmed=21132059|pmcid=2995277}}
 
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{{iacl-pub|author=A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich|title=MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability|jrnl=ms|number=16(2):166-77|when=2010|pubmed=20142309|doi=10.1177/1352458509353649|pmcid=2820126}}
 
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{{iacl-pub|author=J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi|title=Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS|conf=aan2010}}
 
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{{iacl-pub|author=B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman|title=The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software|journal=Neuroinformatics|number=8:5-17|when=March 2010|pubmed=20077162|doi=10.1007/s12021-009-9061-2|pmcid=2860951}}
 
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{{iacl-pub|author=J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Statistical Recombination of Rater Labels on Surfaces|conf=spie2010|doi=10.1117/12.844214|pubmed=21152374|pmcid=2997739}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Synthesizing MR contrast and resolution through a patch matching technique|conf=spie2010|doi=10.1117/12.844575|pubmed=20431709|pmcid=2860803|pdf=/proceedings/iacl/2010/RoyxSPIE10-Synthesising_MR_contrat_and_resolution.pdf}}
 
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{{iacl-pub|author=X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince|title=A novel contrast for DTI visualization for thalamus delineation|conf=spie2010|doi=10.1117/12.844473|pdf=/proceedings/iacl/2010/FanxSPIE10-Novel_contrast_for_DTI.pdf}}
 
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{{iacl-pub|author=B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince|title=Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI|conf=spie2010|doi=10.1117/12.844171|pubmed=20396591|pmcid=2854412|pdf=/proceedings/iacl/2010/LanxSPIE10-Resolution_of_crossing_fibers_with_constrained_compressed_sensing.pdf}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham|title=A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions|jrnl=ni|number=49(2):1524-1535|when=January 2010|pubmed=19766196|doi=10.1016/j.neuroimage.2009.09.005|pmcid=2806481}}
 
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{{iacl-pub|author=J.A. Bogovic, P.-L. Bazin, J.L. Prince|title=Topology-Preserving STAPLE|conf=mmbia2010|doi=10.1109/CVPRW.2010.5543195|pdf=/proceedings/iacl/2010/BogxMMBIA10-Topology_preserving_STAPLE.pdf}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Bogovic, J.L. Prince|title=Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data|conf=spie2010|doi=10.1117/12.844182|pubmed=20694058|pmcid=2917119|pdf=/proceedings/iacl/2010/LanxSPIE10-Simultaneous_truth_and_performance_level_estimation.pdf}}
 
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{{iacl-pub|author=L.M. Ellingsen, G. Chintalapani, R.H. Taylor, and J.L. Prince|title=Robust deformable image registration using prior shape information for atlas to patient registration|journal=Comput. Med. Imaging Graph|number=34(1):79-90|when=January 2010|doi=10.1016/j.compmedimag.2009.05.003|pubmed=19515532|pdf=/proceedings/iacl/2010/EllxCMIG10-registration_using_prior_shape.pdf}}
 
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{{iacl-pub|author=J. Bian, J.H Siewerdsen, X. Han, E.Y. Sidky, J.L. Prince, C.A. Pelizzari, and X. Pan|title=Evaluation of sparse-view reconstruction from flat-panel-detector cone-beam CT|jrnl=pmb|when=2010|doi=10.1088/0031-9155/55/22/001|pubmed=20962368|pdf=/proceedings/iacl/2010/BiaxPhysMedBio10-Evaluation_of_Cone-Beam_CT.pdf}}
 
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{{iacl-pub|author=E. Dehghan, J. Lee, M. Moradi, X. Wen, G. Fichtinger, and S.E. Salcudean|title=Prostate brachytherapy seed localization using C-arm rotation measurement and motion compensation|conf=miccai2010|pubmed=20879242}}
 
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{{iacl-pub|author=G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen|title=Task-based analysis of detectability in tomosynthesis and cone-beam CT: validation of Fourier metrics in comparison to real observers|pub=The 52nd Annual Meeting of the American Association of Physicists in Medicine|loc=Philadelphia, PA|when=July 18-22, 2010|doi=10.1118/1.3469560}}
 
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{{iacl-pub|author=G.J. Gang, D.J. Tward, J. Lee, and J.H. Siewerdsen|title=Anatomical background and the generalized detectability index for tomosynthesis and cone-beam CT|jrnl=mp|number=37(5):1948-1965|when=May 2010|doi=10.1118/1.3352586|pubmed=20527529|pmcid=2862054}}
 
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{{iacl-pub|author=N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince|title=Seed localization in MRI-guided prostate brachytherapy using inversion-recovery with on-resonant water suppression (IRON)|conf=ismrm2010}}
 
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{{iacl-pub|author=N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince|title=MRI-based prostate brachytherapy seed localization|conf=isbi2010|doi=10.1109/ISBI.2010.5490259|pdf=/proceedings/iacl/2010/KuoxISBI10-MRI Based Brachytherapy.pdf}}
 
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{{iacl-pub|author=M.S. Ayad, J. Lee, A. Deguet, E.C. Burdette, and J.L. Prince|title=C-arm pose estimation using a set of coplanar ellipses in correspondence|conf=isbi2010|doi=10.1109/ISBI.2010.5490260|pubmed=20640239|pmcid=2904530|pdf=/proceedings/iacl/2010/AyaxISBI10-C-arm_pose_estimation.pdf}}
 
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{{iacl-pub|author=J. Lee, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince|title=Optimal reconstruction method for intraoperative seed localization using fluoroscopy in prostate brachytherapy|pub=American Brachytherapy Society Annual meeting|loc=Atlanta, Georgia|when=Apr-May. 2010}}
 
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{{iacl-pub|author=N. Kuo, J. Lee, A. Deguet, D.Y. Song, E.C. Burdette, and J.L. Prince|title=Automatic Segmentation of Seeds and Fluoroscope Tracking (FTRAC) Fiducial in Prostate Brachytherapy X-ray Images|conf=spie2010|doi=10.1117/12.844520|pdf=/proceedings/iacl/2010/KuoxSPIE10-FTRACBrachytherapy.pdf}}
 
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{{iacl-pub|author=G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen|title=The generalized NEQ and detectability index for tomosynthesis and cone-beam CT: from cascaded systems analysis to human observers|conf=spie2010|doi=10.1117/12.845462|pdf=/proceedings/iacl/2010/GanxSPIE10-Generalized_NEQ_and_detectability_index_for_tomosynthesis.pdf}}
 
  
  
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{{h4|2009}}
 
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{{iacl-pub|author=H.K. Agarwal, K.Z. Abd-Elmoniem, and J.L. Prince|title=TruHARP: single breath-hold MRI for high resolution cardiac motion and strain quantification|conf=isbi2009|doi=10.1109/ISBI.2009.5193083|pubmed=20559463|pmcid=2886723}}
 
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{{iacl-pub|author=X. Liu, K.Z. Abd-Elmoniem and J.L. Prince|title=Incompressible Cardiac Motion Estimation of the Left Ventricle Using Tagged MR Images|conf=miccai2009|doi=10.1007/978-3-642-04271-3_41}}
 
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{{iacl-pub|author=X. Liu, Y. Bai, and J.L. Prince|title=Shortest Path Refinement For HARP Motion Tracking|conf=spie2009|number=7259:72590V|when=March 2009|doi=10.1117/12.812620|pubmed=19946575|pmcid=2782918}}
 
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{{iacl-pub|author=X. Liu, J. Zhuo, H.K. Agarwal, K.Z. Abd-Elmoniem, E. Murano, M. Stone, R. Gullapalli, and J.L. Prince|title=Quantification of Three Dimensional Tongue Motion During Speech Using zHARP|conf=spie2009|doi=10.1117/12.811706}}
 
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{{iacl-pub|author=S. Sampath, N.F. Osman, and J.L. Prince|title=A combined harmonic phase and strain-encoded pulse sequence for measuring three-dimensional strain|jrnl=mri|number=27(1):55-61|when=January 2009|doi=10.1016/j.mri.2008.05.020|pubmed=18619755|pmcid=2599804}}
 
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{{iacl-pub|author=S.H. Ying, B.A. Landman, S. Chowdhury, A.H. Sinofsky, A. Gambini, S. Mori, D.S. Zee, and J.L. Prince|title=Orthogonal diffusion-weighted MRI measures distinguish region-specific degeneration in cerebellar ataxia subtypes|journal=J. Neurol.|number=256(11):1939-1942|when=November 2009|doi=10.1007/s00415-009-5269-1|pubmed=19653028|pmcid=2789274}}
 
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{{iacl-pub|author=P.-L. Bazin, J.A. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham|title=Belief Propagation Based Segmentation of White Matter Tracts in DTI|conf=miccai2009|number=pp. 943-950|doi=10.1007/978-3-642-04268-3|pubmed=20426079}}
 
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{{iacl-pub|author= B.A. Landman, P.-L. Bazin, S.A. Smith, and J.L. Prince|title=Robust Estimation of Spatially Variable Noise Fields |jrnl=mrm|when=62(2):500-509, August 2009|doi=10.1002/mrm.22013|pubmed=19526510|pmcid=2806192}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging|jrnl=jmri|number=27(6):741-751|when=July 2009|doi=doi:10.1016/j.mri.2009.01.001|pubmed=19250784|pmcid=2733233}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, D.S. Reich, and D.L. Pham|title=Automated Cortical Reconstruction of Brains with Multiple Sclerosis|conf=isbi2009|doi=10.1109/ISBI.2009.5193311}}
 
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{{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince|title=A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images|conf=isbi2009|doi=10.1109/ISBI.2009.5193070|pubmed=20126426|pmcid=2814436}}
 
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{{iacl-pub|author=B.A. Landman, J.C. Hoyt, E.J. Sax, and K.P. Smith|title=NeuroWeb Database: A Laboratory Management System for Neuroimaging Coordination, Collaboration and Analysis|conf=hbm2009|doi=10.1016/S1053-8119(09)70586-5}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, and D.L. Pham|title=An Automated Pipeline for Cortical Reconstruction of Brains with MS|conf=hbm2009|doi=10.1016/S1053-8119(09)70836-5}}
 
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{{iacl-pub|author=J. Bogovic, R. Nicoletto, B. Landman, J.L. Prince, and S. Ying|title=Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes|conf=hbm2009|doi=10.1016/S1053-8119(09)71895-6}}
 
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{{iacl-pub|author=B.A. Landman, B.C. Lucas, J.A. Bogovic, A. Carass, and J.L. Prince|title=A Rapid Prototyping Environment for NeuroImaging in Java|conf=hbm2009|doi=10.1016/S1053-8119(09)70239-3}}
 
−
{{iacl-pub|author=J. Wan, A. Carass, P.-L. Bazin, S.H. Ying, and J.L. Prince|title=Automated Cerebellum Extraction From Whole Head 3D MR Images|conf=hbm2009|doi=10.1016/S1053-8119(09)71592-7}}
 
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{{iacl-pub|author=M.E. Richardson, D. Crocetti, J. Wan, D.L. Pham, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky|title=Automated MRI Parcellation of the Frontal Lobe|conf=hbm2009|doi=doi:10.1016/S1053-8119(09)70451-3}}
 
−
{{iacl-pub|author=B.A. Landman|title=CATNAP and JIST: DTI Processing Made Ridiculously Simple|conf=ismrm2009}}
 
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{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L Prince|title=Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets|conf=ismrm2009}}
 
−
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, and P.C.M. van Zijl|title=Optimal An Open Source Monte Carlo Framework for Simulating Diffusion in Biologically Relevant Geometries including Broken, Crimped and Bulging Axons|conf=ismrm2009}}
 
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{{iacl-pub|author=K.R. Rocha, G. Sundaramoorthi, A.J. Yezzi, and J.L. Prince|title=3D Topology Preserving Flows for Viewpoint-Based Cortical Unfolding|journal=Int. J. Comput. Vis.|number=85(3):223-236|when=December 2009|doi=10.1007/s11263-009-0214-4|pubmed=19960105|pmcid=2786089}}
 
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{{iacl-pub|author=L.M. Ellingsen and J.L. Prince|title=Mjolnir:Extending HAMMER Using a Diffusion Transformation Model and Histogram Equalization for Deformable Image Registration|journal=Int. J. Biomed. Imaging|number=2009:281615|when=August 2009|doi=10.1155/2009/281615|pubmed=19680457|pmcid=2724857}}
 
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{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A Moving Grid Framework for Geometric Deformable Models|journal=Int. J. Comput. Vis.|number=84(1):63-79|when=August 2009|doi=10.1007/s11263-009-0231-3|pubmed=19946381|pmcid=2784682}}
 
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{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Digital Topology on Adaptive Octree Grids|journal=J. Math Imaging Vis.|number=34(2):165-184|when=June 2009|doi=10.1007/s10851-009-0140-7|pubmed=20072715|pmcid=2805029}}
 
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{{iacl-pub|author=J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince|title=Optimal Matching for Prostate Brachytherapy Seed Localization with Dimension Reduction|conf=miccai2009|doi=10.1007/978-3-642-04268-3_8|pdf=/proceedings/iacl/2009/LeexMICCAI09-OptimalMatchingBrachytherapy.pdf}}
 
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{{iacl-pub|author=J. Lee, C. Labat, A.K. Jain, G. Fichtinger, and J.L. Prince|title=Reduced-Dimensionality Matching for 3-D Reconstruction of Prostate Brachytherapy Implants from Incomplete Data|conf=isbi2009|doi=10.1109/ISBI.2009.5193235|pdf=/proceedings/iacl/2009/LeexISBI09-BrachytherapyfromIncompleteData.pdf}}
 
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{{iacl-pub|author=J. Lee, X. Liu, A.K. Jain, D.Y. Song, E.C. Burdette, J.L. Prince, and G. Fichtinger|title=Prostate Brachytherapy Seed Reconstruction with Gaussian Blurring and Optimal Coverage Cost|jrnl=tmi|number=28(12):1955-1968|when=December 2009|doi=10.1109/TMI.2009.2026412|pubmed=19605321|pdf=/proceedings/iacl/2009/LeexTMI09-Prostate_Brachytherapy_Seed_Reconstruction.pdf}}
 
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{{iacl-pub|author=E.M. Boctor, N. Deshmukh, M.S. Ayad, C. Clarke, K. Dickie, M.A. Choti, and E.C. Burdette|title=Three-dimensional heat-induced echo-strain imaging for monitoring high-intensity acoustic ablation|conf=spie2009|doi=10.1117/12.811287}}
 
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{{iacl-pub|author=M.S. Ayad, J. Lee, J.L. Prince, and G. Fichtinger|title=Prostate Brachytherapy Seed Localization Using a Mobile C-arm Without Tracking|conf=spie2009|doi=10.1117/12.811225|pubmed=20052296|pmcid=2801145}}
 
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{{iacl-pub|author=O. Sadowsky, J. Lee, J.L. Prince, and R.H. Taylor|title=Enhancement of Mobile C-arm Cone-Beam Reconstruction Using Prior Anatomical Models|conf=spie2009|doi=10.1117/12.813405|pdf=/proceedings/iacl/2009/SadxSPIE09-Mobile_c-arm_cone-beam_rconstruction.pdf}}
 
  
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{{PubPage_2008}}
  
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{{h4|2008}}
 
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{{iacl-pub|author=H.K. Agarwal, K.Z. Abd-Elmoniem, M. Schär, S. Kelle, J.L. Prince, and M. Stuber|title=Coronary magnetic resonance angiography using non spatially selective navigator excitations at 3T|conf=ismrm2008}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, and J.L. Prince|title=Direct Three-Dimensional Myocardial Strain Tensor Quantification and Tracking using zHARP|jrnl=mia|number=12(6):778-786|when=December 2008|doi=10.1016/j.media.2008.03.008|pubmed=18511332|pmcid=2590624}}
 
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{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces|jrnl=tmi|number=27(12):1739-1753|when=December 2008|doi=10.1109/TMI.2008.925080|pubmed=19033090|pmcid=2597639}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, D.S. Reich, P.A. Calabresi, and D.L. Pham |title=Multiple Sclerosis Lesion Segmentation Using Statistical and Topological Atlases|conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince |title=Tensor Interpolation by Concise Local Estimation of Anisotropy and Rotation |conf=miccai2008}}
 
−
{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L. Prince |title=Compressed Sensing of Multiple Intra-Voxel Orientations with Traditional DTI |conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, J. Farrell, H. Huang, J.L. Prince, and S. Mori|title= Diffusion Tensor Imaging at Low SNR:Non-monotonic behaviors of tensor contrasts|jrnl=mri|number=26(6):790-800|when=July 2008|doi=10.1016/j.mri.2008.01.034|pubmed=18499378|pmcid=2583784}}
 
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{{iacl-pub|author=A. Ozturk, A.D. Sasson, J.A.D. Farrell, B.A. Landman, A.C.B.S. da Motta, A. Aralasmak, and D.M. Yousem |title= Regional Differences in Diffusion Tensor Imaging Measurements: Assessment of Intra-Rater and Inter-Rater Variability|pub=American Journal of Neuroradiology|number=29:1124-1127|when=June 2008}}
 
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{{iacl-pub|author=B. Lucas, B. Landman, J.L. Prince, and D. Pham|title=MAPS: A Free Medical Image Processing Pipeline|conf=hbm2008}}
 
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{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Characterizing Regional Gray Matter Thickness Trends in Normal Aging|conf=hbm2008}}
 
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{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity|conf=hbm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince.|title= Robust Maximum Likelihood Estimation in Q-space MRI|conf=isbi2008|doi=10.1109/ISBI.2008.4541134}}
 
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{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Automated Reliable Labeling of the Cortical Surface|conf=isbi2008|doi=10.1109/ISBI.2008.4541027}}
 
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{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=Automatically identifying white matter tracts using cortical labels|conf=isbi2008|doi=10.1109/ISBI.2008.4541141|pubmed=20119500|pmcid=2812932}}
 
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{{iacl-pub|author=S. Roy, H. Agarwal, A. Carass, Y. Bai, D.L. Pham, and J.L. Prince|title=Fuzzy C-Means with Variable Compactness|conf=isbi2008|doi=10.1109/ISBI.2008.4541030|pubmed=20126427|pmcid=2814437}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust DTI Noise Level Estimation Improves RESTORE Tensor Estimation|conf=ismrm2008}}
 
−
{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.C.M. van Zijl, and J.L. Prince|title=Q-Space Diffusion Weighted MRI Analyzed with Maximizing Rician Likelihood Improves Reliability and Tissue Contrast|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince|title=Exploring the Information Content of q-Space Diffusion Weighted Imaging: Application to Multiple Sclerosis (MS) Spinal Cord Lesions|conf=ismrm2008}}
 
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{{iacl-pub|author=X. Fan, P.-L. Bazin, J. Bogovic, Y. Bai, and J.L. Prince|title=A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation|conf=cvpr2008|doi=10.1109/CVPRW.2008.4563013}}
 
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{{iacl-pub|author=X. Fan, P.-L. Bazin, and J.L. Prince|title=A Multi-Compartment Segmentation Framework With Homeomorphic Level Sets|conf=cvpr2008|doi=10.1109/CVPR.2008.4587475|pubmed=23223164}}
 
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{{iacl-pub|author=J. Lee, X. Liu, J.L. Prince, and G. Fichtinger|title=Prostate Brachytherapy Seed Localization with Gaussian Blurring and Camera Self-Calibration|conf=miccai2008|doi=10.1007/978-3-540-85990-1_76|pubmed=18982658|pdf=/proceedings/iacl/2008/LeexMICCAI08-Prostate_brachytherapy_seed_localization_Gaussian_blurring.pdf}}
 
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{{iacl-pub|author=G. Chintalapani, A.K. Jain, D.H. Burkhardt, J.L. Prince, and G. Fichtinger|title=CTREC: C-arm tracking and reconstruction using elliptic curves|conf=cvpr2008|doi=10.1109/CVPRW.2008.4563029|pdf=/proceedings/iacl/2008/ChixMMBIA08-CTRAC.pdf}}
 
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{{iacl-pub|author=J. Lee, X. Liu, A.K. Jain, J.L. Prince, and G. Fichtinger|title=Tomosynthesis-based Radioactive Seed Localization in Prostate Brachytherapy Using Modified Distance Map Images|conf=isbi2008|doi=10.1109/ISBI.2008.4541087|pubmed=20066153|pdf=/proceedings/iacl/2008/LeexISBI08-Tomosynthesis-based_radioactive_seed_localization.pdf}}
 
  
  
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{{h4|2007}}
+
{{PubPage_2007}}
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{{iacl-pub|author=K.Z. Abd-Elmoniem, S. Sampath, N.F. Osman, and J.L. Prince|title=Real-Time Monitoring of Cardiac Regional Function Using FastHARP MRI and Region-of-Interest Reconstruction|jrnl=tbme|number=54(9):1650-1656|when=September 2007|doi=10.1109/TBME.2007.891946|pubmed=17867357}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber|title=Three-Dimensional Magnetic Resonance Myocardial Motion Tracking From a Single Image Plane|jrnl=mrm|number=58(1):92-102|when=July 2007|doi=10.1002/mrm.21267|pubmed=17659617}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, and J.L. Prince|title=Multi-slice Three-Dimensional Myocardial Strain Tensor Quantification Using zHARP|conf=ipmi2007|doi=10.1007/978-3-540-73273-0_6}}
 
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{{iacl-pub|author=H.K. Agarwal and J.L. Prince|title=Fast Imaging of Dynamic Objects Using POCS Partial Fourier Reconstruction|conf=ismrm2007}}
 
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{{iacl-pub|author=A. El-Sharkawy, K.Z. Abd-Elmoniem, J.L. Prince, and P. Bottomley|title=Simultaneous Temperature and Motion Tracking Using HARP MRI [T-HARP]|conf=ismrm2007}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, N.F. Osman, and J.L. Prince|title=Optimal z-Encoding Frequency for zHARP: In-vivo Validation and Comparison with SF-CSPAMM|conf=ismrm2007}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, N.F. Osman, and J.L. Prince|title=Accelerated Three-Dimensional Myocardial Strain Quantification using zHARP|conf=ismrm2007}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem and J.L. Prince|title=Total Removal of Unwanted Echoes in Harmonic Phase MRI (TRUE-HARP)|conf=ismrm2007}}
 
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{{iacl-pub|author=X. Liu and J.L. Prince|title=Fast and Robust HARP Tracking Using Region Growing|conf=ismrm2007}}
 
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{{iacl-pub|author=X. Liu, E. Murano, M. Stone, and J.L. Prince|title=HARP tracking refinement using seeded region growing|conf=isbi2007|doi=10.1109/ISBI.2007.356866}}
 
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{{iacl-pub|author=H.K. Agarwal, K.Z. Abd-Elmoniem, and J.L. Prince|title=Fast Motion Imaging Using Reduced Field Of View Partial Fourier MRI|conf=isbi2007|doi=10.1109/ISBI.2007.356928}}
 
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{{iacl-pub|author=H. Shinagawa, E.Z. Murano, J. Zhuo, R.P. Gullapalli, B. Landman, J.L. Prince, and M. Stone|title=Human Tongue Myoarchitecture with Oral Appliance, Using Diffusion Tensor Imaging|pub=International American and Canadian Associations for Dental Research|loc=New Orleans, Louisiana|when=March 2007}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, J. Terrovitis, M.R. Abraham, J.L. Prince, M. Stuber|title=Slice-Following CSPAMM Myocardial Tagging in Rats and on a Human High-Field System|conf=scmr2007}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, N. Osman, and J.L. Prince|title=Toward Optimal Measure of 3-D Myocardium Displacements from a Single Slice Using zHARP: In-vivo Validation and Comparison with CSPAMM|conf=scmr2007}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince.|title=Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=mmbia2007}}
 
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{{iacl-pub|author=J.A. Farrell, B.A. Landman, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of SNR on the Accuracy and Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T |jrnl=jmri|number=26(3):756-767|when=August 2007|pubmed=17729339}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Farrell, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T|jrnl=ni|number=36(4):1123-1138|when=July 2007}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, N-L. Patel, S. Mori, and J.L. Prince|title=DTI Fiber Tracking: The Importance of Adjusting DTI Gradient Tables for Motion Correction. CATNAP – A Tool to Simplify and Accelerate DTI Analysis|conf=hbm2007}}
 
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{{iacl-pub|author=B.A. Landman, A.X. Du, W.D. Mayes, J.L. Prince, and S.H. Ying|title=Diffusion Tensor Imaging Enables Robust Mapping of the Deep Cerebellar Nuclei|conf=hbm2007}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=Tradeoffs Between Tensor Orientation and Anisotropy in DTI: Impact of Diffusion Weighting Scheme|conf=ismrm2007}}
 
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{{iacl-pub|author=B.A. Landman, H. Huang, J.L. Prince, and S.H. Ying|title=A Window for High-Resolution Post-Mortem DTI: Mapping Contrast Changes in Neural Degeneration|conf=ismrm2007}}
 
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{{iacl-pub|author=B.A. Landman, S. Mori, and J.L. Prince|title=Systematic Evaluation of Linear and Nonlinear DTI Estimation Methods: An Open Framework|conf=ismrm2007}}
 
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{{iacl-pub|author=A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett, and J.L. Prince|title=A Joint Registration and Segmentation Approach to Skull Stripping|conf=isbi2007|doi=10.1109/ISBI.2007.356937}}
 
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{{iacl-pub|author=P. Aksit, J.A. Derbyshire, and J.L. Prince|title=Three-point method for fast and robust field mapping for EPI geometric distortion correction|conf=isbi2007|doi=10.1109/ISBI.2007.356808}}
 
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{{iacl-pub|author=G. Chintalapani, L.M. Ellingsen, O. Sadowsky, J.L. Prince, and R.H. Taylor|title=Statistical atlases of bone anatomy: construction, iterative improvement and validation|conf=miccai2007|number=10(1):499-506|doi=10.1007/978-3-540-75757-3_61|pubmed=18051096}}
 
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{{iacl-pub|author=P.-L. Bazin, L.M. Ellingsen, and D.L. Pham|title=Digital homeomorphisms in deformable registration|conf=ipmi2007|number=20:211-222|when=2007|doi=10.1007/978-3-540-73273-0_18|pubmed=17633701}}
 
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{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=Fast numerical scheme for gradient vector flow computation using a multigrid method|journal=IET Image Processing|number=1(1):48-55|when=March 2007|doi=10.1049/iet-ipr:20050225}}
 
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{{iacl-pub|author=K.R. Rocha, A.J. Yezzi, and J.L. Prince|title=A Hybrid Eulerian–Lagrangian Approach for Thickness, Correspondence, and Gridding of Annular Tissues|jrnl=tip|number=16(3):636-648|when=March 2007|doi=10.1109/TIP.2007.891072}}
 
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{{iacl-pub|author=X. Liu, A.K. Jain, and G. Fichtinger|title=Prostate Implant Reconstruction with Discrete Tomography|conf=miccai2007|doi=10.1007/978-3-540-75757-3_89}}
 
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{{iacl-pub|author=C. Labat, A. Jain, G. Fichtinger, and J.L. Prince|title=Toward Optimal Matching for 3D Reconstruction on Brachytherapy Seeds|conf=miccai2007|doi=10.1007/978-3-540-75759-7_85|pdf=/proceedings/iacl/2007/LabxMICCAI07-Toward_optimal_matching_for_reconstruction.pdf}}
 
  
  
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{{h4|2006}}
 
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{{iacl-pub|author=X. Liu, and M. Stone, and J.L. Prince|title=Tracking tongue motion in three dimensions using tagged MR image|conf=isbi2006|doi=10.1109/ISBI.2006.1625182}}
 
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{{iacl-pub|author=H.K. Agarwal and J.L. Prince|title=Theoretical framework for analyzing MR imaging of dynamic objects using filters and downsamplers|conf=spie2006|doi=10.1117/12.653648}}
 
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{{iacl-pub|author=K. Z. Abd-Elmoniem, V. Parthasarathy, and J.L. Prince|title=Artifact Reduction in HARP Strain Maps using Anisotropic Smoothing|conf=spie2006|doi=10.1117/12.656619}}
 
−
{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Octree-based Topology-preserving Isosurface Simplification|conf=mmbia2006}}
 
−
{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, A.S.K. Liu, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=Delineation of Cerebellar Fiber Tracts on Anatomically Aligned Planes with ViPAR, a Novel MRI Visualization and Manipulation Tool|conf=hbm2006}}
 
−
{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=s-Image Representation of Diffusion Tensor Contrast and Fiber Geometry: Leukometric Analysis in the Brainstem and Cerebellum|conf=hbm2006}}
 
−
{{iacl-pub|author=H. Huang, A. Carass, J.L. Prince, B. Landman, P.C.M. van Zijl, and S. Mori|title=Cortico-cortical Connectivity Revealed by DTI-based Tractography|conf=ismrm2006}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=On the Coregistration of Diffusion Weighted Images|conf=ismrm2006}}
 
−
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S. Mori, P.C.M. van Zijl, and J.L. Prince|title=Optimal Partitioning of Diffusion Weighting Schemes|conf=ismrm2006}}
 
−
{{iacl-pub|author=P. Anbazhagan, A. Carass, P.-L. Bazin, and J.L. Prince|title=Automatic Estimation of Mid Sagittal Plane and AC-PC alignment based on Nonrigid Registration|conf=isbi2006|doi=10.1109/ISBI.2006.1625046}}
 
−
{{iacl-pub|author=L. Ellingsen and J.L. Prince|title=Mjolnir: Deformable image registration using feature diffusion|conf=spie2006|doi=10.1117/12.653221}}
 
−
{{iacl-pub|author=L.M. Ellingsen and J.L. Prince|title=Deformable Registration of CT Pelvis Images Using Mjolnir|conf=norsig2006|number=pp. 46-49|doi=10.1109/NORSIG.2006.275273|pdf=/proceedings/iacl/2006/EllxNORSIG06-Deformable_Registration_of_CT_Pelvis_Images.pdf}}
 
−
{{iacl-pub|author=L.M. Ellingsen and J.L. Prince|title=Mjolnir: Deformable Image Registration using Feature Diffusion|conf=spie2006|pdf=/proceedings/iacl/2006/EllxSPIE06-Mjolnir_Deformable_Image_Registration.pdf}}
 
−
{{iacl-pub|author=O. Sadowsky, K. Ramamurthi, L.M. Ellingsen, G. Chintalapani, J.L. Prince, and R.H. Taylor|title=Atlas-assisted Tomography: Registration of a Deformable Atlas to Compensate for Limited-angle Cone-beam Trajectory|conf=isbi2006|number=pp. 1244-1247|doi=10.1109/ISBI.2006.1625150|pdf=/proceedings/iacl/2006/SadxISBI06-Atlas-Assisted_Tomography.pdf}}
 
  
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{{PubPage_2006}}
  
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{{h4|2005}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber|title=zHARP:Simultaneous in-plane and through-plane displacement quantification. An algorithm for direct high-density 3-D cardiac displacement measurement|pub=Proceedings of the SCMR, Eighth Annual Scientific Sessions, Abstract 554|when=January 2005}}
 
−
{{iacl-pub|author=L. Pan, J.L. Prince, J.A.C. Lima, and N.F. Osman|title=Fast tracking of cardiac motion using 3D-HARP|jrnl=tbme|number=52(8):1425-1435|when=August 2005|doi=10.1109/TBME.2005.851490|pubmed=16119238}}
 
−
{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, M. Stuber, and J.L. Prince|title=ZHARP: Three-Dimensional Motion Tracking From a Single Image Plane|conf=ipmi2005}}
 
−
{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber|title=zHARP:  Simultaneous in-plane and through-plane displacement quantification. An algorithm for direct high-density 3-D cardiac displacement measurement|pub=Proceedings of the SCMR, Eighth Annual Scientific Sessions, Abstract 554|when=January 2005}}
 
−
{{iacl-pub|author=Y. Bai, X. Han, D. Pham, and J.L. Prince|title=Super-resolved multi-channel fuzzy segmentation of MR brain images|conf=spie2005}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A 2D Moving Grid Geometric Deformable Model|conf=cvpr2003|doi=10.1109/CVPR.2003.1211349}}
 
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{{iacl-pub|author=A. Yezzi and J.L. Prince|title=An Eulerian PDE approach for computing tissue thickness|jrnl=tmi|number=22(10):1332–1339|when=October 2003|doi=10.1109/TMI.2003.817775|pubmed=14552586}}
 
−
{{iacl-pub|author=O. Sadowsky, K. Ramamurthi, J.L. Prince, and R.H. Taylor|title=Using anatomical models and fast rendering algorithms for C-arm pose recovery and cone-beam tomographic reconstruction of bone anatomy|pub=5th Annual Meeting of the International Society, for Computer Assisted Orthopaedic Surgery|loc=Helsinki, Finland|when=June 19-22, 2005}}
 
  
  
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{{h4|2004}}
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{{PubPage_2005}}
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{{iacl-pub|author=N.F. Osman and J.L. Prince|title=Regenerating MR tagged images using harmonic phase (HARP) methods|jrnl=tbme|number=51(8):1428-1433|when=August 2004|doi=10.1109/TBME.2004.827932}}
 
−
{{iacl-pub|author=L. Pan, J.L. Prince, J.A.C. Lima, and  N.F. Osman|title=Validation of 3D-HARmonic Phase (3D-HARP) for Cardiac Motion Estimation|conf=ismrm2004}}
 
−
{{iacl-pub|author=V. Parthasarathy and J.L. Prince|title=Artifact Reduction in HARP Strain Maps|conf=ismrm2004}}
 
−
{{iacl-pub|author=S. Sampath and J.L. Prince|title=3D Tracking of Cardiac Material Points Using a Combined Slice-Following Harmonic Phase (SF-HARP) Magnetic Resonance Imaging Approach|conf=ismrm2004}}
 
−
{{iacl-pub|author=V. Parthasarathy, M. Ness-Aiver, and J.L. Prince|title=Dynamic range of harmonic phase magnetic resonance imaging (HARP-MRI)|conf=isbi2004}}
 
−
{{iacl-pub|author=S. Sampath and J.L. Prince|title=Imaging the Evolution of Three-dimensional myocardial strains using a Fast MR Imaging Technique|conf=isbi2004}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, D.Q. Naiman, S.M. Resnick, M.A. Kraut, and J.L. Prince|title=Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study|conf=miccai2004}}
 
−
{{iacl-pub|author=X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J.L. Prince|title=CRUISE: Cortical Reconstruction Using Implicit Surface Evolution|jrnl=ni|number=23(3):997-1012|when=2004|doi=10.1016/j.neuroimage.2004.06.043}}
 
−
{{iacl-pub|author=D. Pham and J.L. Prince|title=Robust Unsupervised Tissue Classification in MR Images|conf=isbi2004|doi=10.1109/ISBI.2004.1398486}}
 
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{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=An Automated Method for Finding Curves of Sulcal Fundi on the Human Cortical Surface|conf=isbi2004|doi=10.1109/ISBI.2004.1398777}}
 
−
{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Super-resolution Reconstruction of MR Brain Images|conf=ciss2004}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Han, X. Tao, C. Xu, S.M. Resnick, D. Pham, and J.L. Prince|title=Cortical Surface Segmentation and Mapping|jrnl=ni|number=23:S108-S118|when=2004|doi=10.1016/j.neuroimage.2004.07.042|pubmed=15501080}}
 
−
{{iacl-pub|author=D. Tosun and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|jrnl=mia|number=8:295-309|when=2004|doi=10.1016/j.media.2004.06.020}}
 
−
{{iacl-pub|author=K. Ramamurthi, J.L. Prince, and N. Strobel|title= Exact 3D cone-beam reconstruction from projections obtained over a Wobble trajectory on a C-arm|conf=isbi2004|doi=10.1109/ISBI.2004.1398692|pdf=/proceedings/iacl/2004/RamxISBI04-Extract_3D_Cone-beam_reconstruction.pdf}}
 
  
  
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{{h4|2003}}
 
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{{iacl-pub|author=K.Z. Abd-Elmoniem and J.L. Prince|title=Algorithms for Real-Time FastHARP Cardiac Function Analysis|conf=miccai2003}}
 
−
{{iacl-pub|author=N.F. Osman, S. Sampath, J.A. Derbyshire, M. Stuber, D. Kraitchman, and J.L. Prince|title=Quantitative Imaging of Myocardial Function with No Breath-holding Using Fast Strain-Encoded (SENC)|conf=ismrm2003}}
 
−
{{iacl-pub|author=N.F. Osman, J. Garot, B. Gerber, K. Wu, D. Kraitchman, J.A.C. Lima, and J.L. Prince|title=Strain Encoded (SENC) Imaging Detects Regional Dysfunction in the Heart without Image Processing|conf=ismrm2003}}
 
−
{{iacl-pub|author=K.Z. Abd-Elmoniem, S. Sampath, N.F. Osman, and J.L. Prince|title=Tool for Automatic Real-Time Regional Cardiac Function Analysis using HARP|conf=spie2003}}
 
−
{{iacl-pub|author=S. Sampath, J.A. Derbyshire, N.F. Osman, and J.L. Prince|title=Real-time imaging of cardiac strain using FastHARP: a comparison between breath-hold and non-breath-hold studies|conf=scmr2003}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|conf=miccai2003}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A topology preserving level set method for geometric deformable models|jrnl=pami|number=25(6):755-768|when=June 2003|doi=10.1109/TPAMI.2003.1201824}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=Topology-Preserving Geometric Deformable Models and Brain Reconstruction|pub=Geometric Level Set Methods in Imaging, Vision, and Graphics|loc=Edited by Stanley Osher and Nikos Paragios, Springer-Verlag|when=2003|doi=10.1007/0-387-21810-6_22}}
 
−
{{iacl-pub|author=K.J. Behnke, M.E. Rettmann, D.L. Pham, D. Shen, S.M. Resnick, C. Davatzikos, and J.L. Prince|title=Automatic classification of sulcal regions of the human brain cortex using pattern recognition|conf=spie2003|pnumber=p153|doi=10.1117/12.480834}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A 2D Moving Grid Geometric Deformable Model|conf=cvpr2003|doi=10.1109/CVPR.2003.1211349}}
 
−
{{iacl-pub|author=A. Yezzi and J.L. Prince|title=An Eulerian PDE approach for computing tissue thickness|jrnl=tmi|number=22(10):1332–1339|when=October 2003|doi=10.1109/TMI.2003.817775|pubmed=14552586}}
 
−
{{iacl-pub|author=K. Ramamurthi and J.L. Prince|title=Region of interest cone beam tomography with prior CT data|pub=Conference Record of the Thirty-Seventh Asilomar Conference on Signals, Systems and Computers|number=2:1924-1927|when=November 9-12 2003|loc=Pacific Grove, CA|doi=10.1109/ACSSC.2003.1292317|pdf=/proceedings/iacl/2003/RamxCSSC03-Region_of_interest_cone-beam_tomography.pdf}}
 
  
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{{PubPage_2004}}
  
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{{h4|2002}}
 
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{{iacl-pub|author=S. Sampath, V. Parthasarathy, and J.L. Prince|title=A phantom validation of the FastHARP pulse sequence|conf=isbi2002|doi=10.1109/ISBI.2002.1029207}}
 
−
{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain|jrnl=tmi|when=21(5):513-524, May 2002|doi=10.1109/TMI.2002.1009387|pubmed=12071622}}
 
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{{iacl-pub|author=X. Han, C. Xu, U. Braga-Neto, and J.L. Prince|title=Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm|jrnl=tmi|when=21(2):109-121, February 2002|doi=10.1109/42.993130|pubmed=11929099}}
 
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{{iacl-pub|author=M.E. Rettmann, X. Tao, and J.L. Prince|title=Assisted labeling techniques for the human brain cortex|conf=spie2002|pnumber=p148|doi=10.1117/12.467134}}
 
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{{iacl-pub|author=D.L. Pham, X. Han, M.E. Rettmann, C. Xu, D. Tosun, S.M. Resnick, and J.L. Prince|title=New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm|conf=spie2002|pnumber=p147|doi=10.1117/12.467145}}
 
−
{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=Kriging Filters for Space Time Interpolation|pub=Advances in Imaging and Electron Physics|number=124:139-193|when=November 2002}}
 
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{{iacl-pub|author=M. NessAiver and J.L. Prince|title=Magnitude Image CSPAMM Reconstruction (MICSR) Improves Tag Contrast and Persistence|pub=ESMRMB|loc=Cannes, France|when=August 22-25 2002|pubmed=12876710|doi=10.1002/mrm.10523}}
 
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{{iacl-pub|author=J.M. Links and J.L. Prince|title=Restoration of Multi-collimator/Multi-head SPECT Data Via the Vector Wiener Filter|pub=SNM 49th Annual Mtg.|loc=Los Angeles, California|when=June 16, 2002}}
 
−
{{iacl-pub|author=A. Yezzi and J.L. Prince|title=A PDE Approach for Thickness, Correspondence, and Gridding of Annular Tissues|pub=Proc. Europ. Conf. Comput. Vis. (ECCV)|loc=Copenhagen, Denmark|when=May 2002}}
 
  
  
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{{h4|2001}}
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{{PubPage_2003}}
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{{iacl-pub|author=D.L. Kraitchman, S. Sampath, J.A. Derbyshire, D.A. Bluemke, B.L. Gerber, J.L. Prince, and N.F. Osman|title=Quantitative ischemia detection during cardiac MR stress testing|conf=ebms2001|number=3:2598-2601|doi=}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A Topology Preserving Deformable Model Using Level Sets|conf=cvpr2001|number=2:765-770|loc=Kauai, Hawai|when=8-14 December 2001|pnumber=p131|doi=10.1109/CVPR.2001.991042}}
 
−
{{iacl-pub|author=X. Han, C. Xu, D. Tosun, and J.L. Prince|title=Cortical Surface Reconstruction Using a Topology Preserving Geometric Deformable Model|conf=mmbia2001|doi=10.1109/MMBIA.2001.991736}}
 
−
{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Automated Parcellation of the Cortical Surface for Computation of Regional Gyrification Indices|conf=hbm2001}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Tao, X. Han, C. Xu, and J.L. Prince|title=Calculation of Human Cerebral Cortical Thickness on Opposing Sulcal Banks|conf=hbm2001}}
 
−
{{iacl-pub|author=X. Tao, X. Han, M.E. Rettmann, J.L. Prince, and C. Davatzikos|title=Statistical Study on Cortical Sulci of Human Brains|conf=ipmi2001}}
 
−
{{iacl-pub|author=X. Han, C. Xu, M.E. Rettmann, and J.L. Prince|title=Automatic Segmentation Editing for Cortical Surface Reconstruction|conf=spie2001}}
 
−
{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Hemispherical Map for the Human Brain Cortex|conf=spie2001}}
 
−
{{iacl-pub|author=A. Yezzi and J.L. Prince|title=A PDE Approach for Measuring Tissue Thickness|conf=cvpr2001|doi=10.1109/CVPR.2001.990460}}
 
−
{{iacl-pub|author=D.L. Pham|title=Spatial Models for Fuzzy Clustering|pub=Computer Vision and Image Understanding|number=84(2):285-297|when=2001|doi=10.1006/cviu.2001.0951}}
 
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{{iacl-pub|author=C. Xu, A. Yezzi, Jr., and J.L. Prince|title=A Summary of Geometric Level-Set Analogues for a General Class of Parametric Active Contour and Surface Models|pub=Proc. of 2001 IEEE Workshop on Variational and Level Set Methods in Computer Vision (VLSM 2001)|number=104-111|when=July 2001|doi=10.1109/VLSM.2001.938888}}
 
  
  
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{{h4|2000}}
 
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{{iacl-pub|author=N.F. Osman and J.L. Prince|title=Visualizing myocardial function using HARP MRI|journal=Physics in Medicine and Biology|number=45(6):1665-1682|when=June 2000|doi=10.1088/0031-9155/45/6/318|pubmed=10870717}}
 
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{{iacl-pub|author=N.F. Osman, E.R. McVeigh, and J.L. Prince|title=Imaging heart motion using harmonic phase MRI|jrnl=tmi|number=19(3):186-202|when=March 2000|pnumber=p111|doi=10.1109/42.845177|pubmed=10875703}}
 
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{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Watersheds on the Cortical Surface for Automated Sulcal Segmentation|conf=mmbia2000|number=pp. 20-27|doi=10.1109/MMBIA.2000.852356}}
 
−
{{iacl-pub|author=M.E. Rettmann, X. Han, D.L. Pham, and J.L. Prince|title=Geodesics for Sulcal Segmentation and Depth Measurements|conf=hbm2000}}
 
−
{{iacl-pub|author=D. Yu, C. Xu, and J.L. Prince|title=A New Surface Editing Tool for Generating Truth Models of the Human Cortical Surface|conf=hbm2000}}
 
−
{{iacl-pub|author=C. Xu, X. Han, and J.L. Prince|title=Improving Cortical Surface Reconstruction Accuracy Using an Anatomically Consistent Gray Matter Representation|conf=hbm2000}}
 
−
{{iacl-pub|author=X. Han, M.E. Rettmann, C. Xu, and J.L. Prince|title=Morphology on Triangle Meshes Using Geodesic Distance|conf=ciss2000}}
 
−
{{iacl-pub|author=D.N. Yu, C. Xu, M.E. Rettmann, D.L. Pham, and J.L. Prince|title=Quantitative Validation of a Deformable Cortical Surface Model|conf=spie2000|doi=10.1117/12.387673}}
 
−
{{iacl-pub|author=D. Yu|title=Quantitative Validation of a Cortical Surface Reconstruction Method|pub=MSE thesis, The Johns Hopkins University|when=January, 2000}}
 
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{{iacl-pub|author=N.F. Osman and J.L. Prince|title=On the design of the bandpass filters in harmonic phase MRI|conf=icip2000|doi=10.1109/ICIP.2000.901036}}
 
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{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs|journal=Automatica|number=36(9):1381-1383|when=September 2000|doi=10.1016/S0005-1098(00)00046-7}}
 
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{{iacl-pub|author=C. Tu, T.D. Tran, J.L. Prince, and P.N. Topiwala|title=Projection-based block motion estimation for video coding|pub=Proc. SPIE Applications of Digital Image Processing XXIII, San Diego, California|when=August 2000}}
 
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{{iacl-pub|author=D. L. Pham and J. L. Prince|title=Unsupervised partial volume estimation in single-channel image data|conf=mmbia2000|doi=10.1109/MMBIA.2000.852375}}
 
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{{iacl-pub|author=C. Xu, D.L. Pham, and J.L. Prince|title=Medical Image Segmentation Using Deformable Models|pub=SPIE Handbook on Medical Imaging -- Volume III: Medical Image Analysis|when=edited by J.M. Fitzpatrick and M. Sonka, May 2000}}
 
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{{iacl-pub|author=D.L. Pham, C. Xu, and J.L. Prince|title=Current Methods in Medical Image Segmentation|pub=Annual Review of Biomedical Engineering|number=2:315-338|when=2000|doi=11701515}}
 
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{{iacl-pub|author=C. Xu, A. Yezzi, and J.L. Prince|title=On the Relationship between Parametric and Geometric Active Contours|pub=Proc. of 34th Asilomar Conference on Signals, Systems, and Computers,|number=483-489|when=October 2000|doi=10.1109/ACSSC.2000.911003}}
 
−
{{iacl-pub|author=C. Xu and J.L. Prince|title=Gradient Vector Flow Deformable Models|pub=Handbook of Medical Imaging|when=edited by Isaac Bankman, Academic Press, September, 2000}}
 
−
{{iacl-pub|author=X. Han, M.E. Rettmann, C. Xu, and J.L. Prince|title=Morphology on Triangle Meshes Using Geodesic Distance|conf=ciss2000}}
 
−
{{iacl-pub|author=C. Xu and J.L. Prince|title=Global Optimality of Gradient Vector Flow|conf=ciss2000}}
 
  
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{{PubPage_2002}}
  
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{{h4|1999}}
 
−
{{iacl-pub|author=M.E. Rettmann, C. Xu, D.L. Pham, and J.L. Prince|title=Automated Segmentation of Sulcal Regions|conf=miccai1999}}
 
−
{{iacl-pub|author=C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince|title=Reconstruction of the Human Cerebral Cortex from Magnetic Resonance Images|jrnl=tmi|when=18(6):467-480, June 1999|doi=10.1109/42.781013|pubmed=10463126}}
 
−
{{iacl-pub|author=M.E. Etemad, C. Xu, D.L. Pham, D. Yu, and J.L. Prince|title=On Automated Segmentation of Buried Gyri|conf=hbm1999}}
 
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{{iacl-pub|author=D.L. Pham and J.L. Prince|title=Adaptive Fuzzy Segmentation of Magnetic Resonance Images|jrnl=tmi|number=18(9):737-752|when=September 1999|pnumber=p123|doi=10.1109/42.802752|pubmed=10571379}}
 
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{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=The Kriging Update Model and Recursive Space-Time Function Estimation|jrnl=tsp|number=47(11):2942-2952|when=November 1999|doi=10.1109/78.796430}}
 
−
{{iacl-pub|author=D.L. Pham and J.L. Prince|title=An Adaptive Fuzzy Segmentation Algorithm for Three-dimensional Magnetic Resonance Images|conf=ipmi1999}}
 
−
{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs|conf=ciss1999}}
 
−
{{iacl-pub|author=D.L. Pham and J.L. Prince|title=A Generalized EM Algorithm for Robust Segmentation of Magnetic Resonance Images|conf=ciss1999}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=Convexity Analysis of Active Contour Algorithms|pub=Image and Vision Computing|number=17(1):27-36|when=January 1999}}
 
  
  
−
{{h4|1998}}
+
{{PubPage_2001}}
−
{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=MR tag surface tracking using a spatio-temporal filter/interpolator|conf=icip1998|doi=10.1109/ICIP.1998.723593}}
 
−
{{iacl-pub|author=N.F. Osman and J.L. Prince|title=Angle images for measuring heart motion from tagged MRI|conf=icip1998|doi=10.1109/ICIP.1998.723594}}
 
−
{{iacl-pub|author=C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince|title=Reconstruction of the Central Layer of the Human Cerebral Cortex from MR images|conf=miccai1998}}
 
−
{{iacl-pub|author=C. Xu, M.E. Etemad, D. Yu, D.L. Pham, and J.L. Prince|title=A Spherical Map for Cortical Geometry|conf=hbm1998}}
 
−
{{iacl-pub|author=A.F. Goldszal, C. Davatzikos, D.L. Pham, M.X.H. Yan, R.N. Bryan, and S.M. Resnick|title=An Image Processing System for Qualitative and Quantitative Volumetric Analysis of Brain Images|pub=Journal of Computer Assisted Tomography|when=22(5):827-837, 1998}}
 
−
{{iacl-pub|author=N. Osman and J.L. Prince|title=3-D Vector Tomography on Bounded Domains|pub=Inverse Problems|number=14:185-196|when=1998}}
 
−
{{iacl-pub|author=C. Xu and J.L. Prince|title=Generalized Gradient Vector Flow External Forces for Active Contours|pub=Signal Processing|number=71(2):131-139|when=December 1998}}
 
−
{{iacl-pub|author=D.L. Pham and J.L. Prince|title=Partial Volume Estimation and the Fuzzy C-means Algorithm|conf=icip1998|doi=10.1109/ICIP.1998.999071}}
 
−
{{iacl-pub|author=J.L. Prince and C. Xu|title=Nonconservative force models in active geometry|pub=Proc. Image and Multidim. Dig. Sig. Proc.|loc=pg.139-142, Alpbach, Austria|when=July 1998}}
 
−
{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=Recursive Filtering and Interpolation Algorithm for Function Sequences of Any Dimension|pub=Proc. Image and Multidim. Dig. Sig. Proc|loc=pg.239-242, Alpbach, Austria|when=July 1998}}
 
−
{{iacl-pub|author=C. Xu and J.L. Prince|title=Snakes, shapes, and gradient vector flow|jrnl=tip|number=7(3):359-369|when=March 1998|pnumber=p084|doi=10.1109/83.661186|pubmed=18276256}}
 
−
{{iacl-pub|author=D.L. Pham and J.L. Prince|title=Adaptive fuzzy c-means algorithm for image segmentation in the presence of intensity inhomogeneities|pub=Proc. SPIE Vol.3338, Medical Imaging 1998: Image Processing|loc=pg.555-563, San Diego, California|when=February 21-27, 1998}}
 
  
  
−
{{h4|1997}}
 
−
{{iacl-pub|author=S.N. Gupta, J.L. Prince, and S. Androutsellis-Theotokis|title=Bandpass optical flow for tagged MR imaging|conf=icip1997|doi=10.1109/ICIP.1997.632119}}
 
−
{{iacl-pub|author=D.L. Pham, J.L. Prince, A.P. Dagher, and C. Xu|title=An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging|pub=International Journal of Pattern Recognition and Artificial Intelligence|loc=11(8):1189-1211|when=1997|doi=10.1142/S021800149700055X}}
 
−
{{iacl-pub|author=C. Xu, D.L. Pham, and J.L. Prince|title=Finding the Brain Cortex Using Fuzzy Segmentation, Isosurfaces, and Deformable Surface Models|conf=ipmi1997}}
 
−
{{iacl-pub|author=C. Xu and J.L. Prince|title=Gradient Vector Flow: A New External Force for Snakes|conf=cvpr1997|doi=10.1109/CVPR.1997.609299}}
 
−
{{iacl-pub|author=N.F. Osman and J.L. Prince|title=Reconstruction of Vector Fields in Bounded Domain Vector Tomography|conf=icip1997|doi=10.1109/ICIP.1997.647811}}
 
−
{{iacl-pub|author=N.F. Osman and J.L. Prince|title=Reconstructed Potential Functions in Bounded Domain Vector Tomography|conf=ciss1997}}
 
  
 +
{{PubPage_2000}}
  
−
{{h4|1996}}
 
−
{{iacl-pub|author=E. Waks, J.L. Prince, and A.S. Douglas|title=Cardiac motion simulator for tagged MRI|conf=mmbia1996|doi=10.1109/MMBIA.1996.534070}}
 
−
{{iacl-pub|author=S. Androutsellis-Theotokis and J.L. Prince|title=Experiments in multiresolution motion estimation for multifrequency tagged cardiac MR images|conf=icip1996|doi=10.1109/ICIP.1996.560489}}
 
−
{{iacl-pub|author=D.L. Pham, J.L. Prince, and A.P. Dagher|title=Estimation of Joint Probability Density Functions in Magnetic Resonance Imaging|pub=Proceedings of The Ninth Workshop on Image and Multidimensional Signal Processing (IMDSP)|number=pp. 148-149|when=1996}}
 
−
{{iacl-pub|author=C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan|title=Morphological analysis of brain structures using spatial normalization|pub=Proc. Visualization in Biomedical Computing|loc=Hamburg, Germany|when=September 22-25, 1996}}
 
−
{{iacl-pub|author=C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan|title=A Computerized Approach for Morphological Analysis of the Corpus Callosum|pub=Journal of Computer Assisted Tomography|number=20(1):88-97|when=January, 1996}}
 
−
{{iacl-pub|author=J.M. Links, J.L. Prince, and S.N. Gupta|title=A Vector Wiener Filter for Dual-Radionuclide Imaging|jrnl=tmi|number=15(5):700-709|when=October 1996|doi=10.1109/42.538947}}
 
−
{{iacl-pub|author=J.L. Prince|title=Convolution Backprojection Formulas for 3-D Vector Tomography with Application to MRI|jrnl=tip|number=5(10):1462-1472|when=October 1996|doi=10.1109/83.536894}}
 
−
{{iacl-pub|author=S.N. Gupta, and J.L. Prince|title=On Div-Curl regularization for motion estimation in 3-D volumetric imaging|conf=icip1996|doi=10.1109/ICIP.1996.559652}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=Convexity Analysis of Active Contour Problems|conf=cvpr1996|doi=10.1109/CVPR.1996.517145}}
 
−
{{iacl-pub|author=C.A. Davatzikos, J.L. Prince, and R.N. Bryan|title=Image Registration Based on Boundary Mapping|jrnl=tmi|number=15(1):112-115|when=February 1996|doi=10.1109/42.481446}}
 
−
{{iacl-pub|author=S.N. Gupta, and J.L. Prince|title=Stochastic Models for DIV-CURL Optical Flow Methods|journal=IEEE Signal Processing Letters|number=3(2):32-34|when=February 1996|doi=10.1109/97.484208}}
 
  
  
−
{{h4|1995}}
+
{{PubPage_1999}}
−
{{iacl-pub|author=T.S. Denny Jr. and J.L. Prince|title=Reconstruction of 3-D left ventricular motion from planar tagged cardiac MR images: an estimation theoretic approach|jrnl=tmi|number=14(4):625-635|when=December 1995|doi=10.1109/42.476104}}
 
−
{{iacl-pub|author=T.S. Denny Jr. and J.L. Prince|title=A frequency domain performance analysis of Horn and Schunck's optical flow algorithm for deformable motion|jrnl=tip|number=4(9):1324-1327|when=September 1995|doi=10.1109/83.413178}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=An Active Contour Model for Mapping the Cortex|jrnl=tmi|number=14(1):65-80|when=March 1995|doi=10.1109/42.370403}}
 
−
{{iacl-pub|author=S.N. Gupta and J.L. Prince|title=Stochastic Formulations of Optical Flow Algorithms Under Variable Brightness Conditions|conf=icip1995|doi=10.1109/ICIP.1995.537677}}
 
−
{{iacl-pub|author=J.L. Prince, Q. Tan, and D. Pham|title=Optimization of MR pulse sequences for Bayesian image segmentation|jrnl=mp|number=22(10):1651-1656|when=October 1995|pnumber=p064|pubmed=8551990}}
 
−
{{iacl-pub|author=T.S. Denney, Jr., and J.L. Prince|title=A frequency domain performance analysis of Horn and Schunck's optical flow algorithm for deformable motion|jrnl=tip|number=4(9):1324-1328|when=September 1995|pnumber=p063|doi=10.1109/83.413178}}
 
−
{{iacl-pub|author=J.L. Prince|title=Tomographic Imaging of Vector Fields|pub=Invited Paper, OSA Spring Topical Meetings, Signal Recovery and Synthesis V|number=pp. 2-4|when=March 12-17, 1995}}
 
−
{{iacl-pub|author=S. Gupta and J.L. Prince|title=On Well-posed stochastic formulations of optical flow|conf=ciss1995}}
 
  
  
−
{{h4|1994}}
 
−
{{iacl-pub|author=T.S. Denny Jr. and J.L. Prince|title=3D displacement field reconstruction on an irregular domain from planar tagged cardiac MR images|pub=Proceedings of the 1994 IEEE Workshop on Motion of Non-Rigid and Articulated Objects|number=pp. 172-177|when=1994|doi=10.1109/MNRAO.1994.346239}}
 
−
{{iacl-pub|author=T.S. Denny Jr. and J.L. Prince|title=3D displacement field reconstruction from planar tagged cardiac MR images|pub=Proceedings of the IEEE Workshop on Biomedical Image Analysis|number=pp. 51-60|when=June 24-25 1994|doi=10.1109/BIA.1994.315866}}
 
−
{{iacl-pub|author=M.A. Guttman, J.L. Prince, E.R. McVeigh|title=Tag and contour detection in tagged MR images of the left ventricle|jrnl=tmi|number=13(1):74-88|when=March 1994|doi=10.1109/42.276146}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=Brain Image Registration Based on Curve Mapping|pub=Proceedings of the IEEE Workshop on Biomedical Image Analysis|number=pp. 245-254|when=June 24-25, 1994|loc=Seattle, WA|doi=10.1109/BIA.1994.315847}}
 
−
{{iacl-pub|author=J.L. Prince|title=A Convolution Backprojection Formula for Three-Dimensional Vector Tomography|conf=icip1994|doi=10.1109/ICIP.1994.413685}}
 
−
{{iacl-pub|author=T.S. Denny Jr., J.L. Prince, M.J. Lopez, and E.R. McVeigh|title= Optimal tag pattern validation using magnetic resonance imaging|conf=icip1994|doi=10.1109/ICIP.1994.413441}}
 
−
{{iacl-pub|author=J.L. Prince|title=Tomographic Reconstruction of 3-D Vector Fields Using Inner Product Probes|jrnl=tip|number=3(2):216-219|when=March 1994|doi=10.1109/83.277903}}
 
−
{{iacl-pub|author=T.S. Denney Jr. and J.L. Prince|title=Optimal Brightness Functions for Optical Flow Estimation of Deformable Motion|jrnl=tip|number=3(2):178-191|when=March 1994|doi=10.1109/83.277899}}
 
−
{{iacl-pub|author=T.S. Denney Jr. and J.L. Prince|title=New Results on the Performance of Optical Flow for Deformable Motion|conf=ciss1994}}
 
  
 +
{{PubPage_1998}}
  
−
{{h4|1993}}
 
−
{{iacl-pub|author=C.A. Davatzikos, J.L. Prince, and R.N. Bryan|title=Brain Image Registration Based on Cortical Contour Mapping|pub=Proceedings of the IEEE 1993 Nuclear Science Symposium and Medical Imaging Conference|number=pp. 1823-1826|loc=San Francisco, CA|when=October 31 - November 6, 1993}}
 
−
{{iacl-pub|author=J.L. Prince and A.S. Wilsky|title=Hierarchical reconstruction using geometry and sinogram restoration|jrnl=tip|number=2(3):401-416|when=July 1993|doi=10.1109/83.236529}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=Adaptive active contour algorithms for extracting and mapping thick curves|conf=cvpr1993|doi=10.1109/CVPR.1993.341080}}
 
−
{{iacl-pub|author=TS. Denny Jr. and J.L. Prince|title= Optimal brightness patterns for 2-D optical flow|conf=icassp1993|doi=10.1109/ICASSP.1993.319788}}
 
−
{{iacl-pub|author=J.L. Prince|title=Tomographic reconstruction of 3-D vector fields|conf=icassp1993|doi=10.1109/ICASSP.1993.319853}}
 
  
  
−
{{h4|1992}}
+
{{PubPage_1997}}
−
{{iacl-pub|author=J.L. Prince and E.R. McVeigh|title=Motion estimation from tagged MR image sequences|jrnl=tmi|number=11(2):238-249|when=June 1992|doi=10.1109/42.141648}}
 
−
{{iacl-pub|author=M.A. Guttman, E.R. McVeigh, and J.L. Prince|title=Contour Estimation In Tagged Cardiac Magnetic Resonance Images|pub=IEEE Engineering in Medicine and Biology Society|when=1992|doi=}}
 
−
{{iacl-pub|author=H.W. Muller-Gartner, J.M. Links, J.L. Prince, R.N.  Bryan, E.R. McVeigh, J.P. Leal, C. Davatzikos, and J.J. Frost|title=Measurement of Tracer Concentration in Brain Gray Matter Using Positron Emission Tomography: MRI-Based Correction for Partial Volume Effects|pub=J. Cerebral Blood Flow and Metabolism|loc=12(4):571-583|when=1992|pubmed=1618936}}
 
−
{{iacl-pub|author=T.S. Denny Jr. and J.L. Prince|title=On optimal brightness functions for optical flow|conf=icassp1992|doi=10.1109/ICASSP.1992.226202}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=Segmentation and mapping of highly convoluted contours with applications to medical images|conf=icassp1992|doi=10.1109/ICASSP.1992.226149}}
 
  
  
−
{{h4|1991}}
 
−
{{iacl-pub|author=J.L. Prince and E.R. McVeigh|title=Optical flow for tagged MR images|conf=icassp1991|doi=10.1109/ICASSP.1991.150894}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=Charting Thick Sheets In 3-D|pub=Proceedings of the Seventh Workshop on Multidimensional Signal Processing|when=1991}}
 
  
 +
{{PubPage_1996}}
  
−
{{h4|1990}}
+
 
−
{{iacl-pub|author=J.L. Prince|title=Consistency and convexity in object reconstruction from projections|pub=IEEE International Conference on Systems Engineering|number=pp. 543-546|when=1990|doi=10.1109/ICSYSE.1990.203214}}
+
 
−
{{iacl-pub|author=J.L. Prince and A.S. Willsky|title=Reconstructing convex sets from support line measurements|jrnl=pami|number=12(4):377-389|when=April 1990|doi=10.1109/34.50623}}
+
{{PubPage_1995}}
−
{{iacl-pub|author=J.L. Prince|title=An Iterative Approach To Sinogram Restoration|pub=Proceedings of the Twelfth Annual International Conference of the IEEE Engineering in Medicine and Biology Society|number=pp. 366-367|when=November 1-4 1990|doi=}}
+
 
 +
 
 +
 
 +
{{PubPage_1994}}
 +
 
 +
 
 +
 
 +
{{PubPage_1993}}
 +
 
 +
 
 +
 
 +
{{PubPage_1992}}
 +
 
 +
 
 +
 
 +
{{PubPage_1991}}
 +
 
 +
 
 +
 
 +
{{PubPage_1990}}

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