View source for Publications/2000s

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{{h4|2009}}
{{iacl-pub|author=H.K. Agarwal, K.Z. Abd-Elmoniem, and J.L. Prince|title=TruHARP: single breath-hold MRI for high resolution cardiac motion and strain quantification|conf=isbi2009|doi=10.1109/ISBI.2009.5193083|pubmed=20559463|pmcid=2886723}}
{{iacl-pub|author=X. Liu, K.Z. Abd-Elmoniem, and J.L. Prince|title=Incompressible Cardiac Motion Estimation of the Left Ventricle Using Tagged MR Images|conf=miccai2009|doi=10.1007/978-3-642-04271-3_41}}
{{iacl-pub|author=X. Liu, Y. Bai, and J.L. Prince|title=Shortest Path Refinement For HARP Motion Tracking|conf=spie2009|number=7259:72590V|when=March 2009|doi=10.1117/12.812620|pubmed=19946575|pmcid=2782918}}
{{iacl-pub|author=X. Liu, J. Zhuo, H.K. Agarwal, K.Z. Abd-Elmoniem, E. Murano, M. Stone, R. Gullapalli, and J.L. Prince|title=Quantification of Three Dimensional Tongue Motion During Speech Using zHARP|conf=spie2009|doi=10.1117/12.811706}}
{{iacl-pub|author=S. Sampath, N.F. Osman, and J.L. Prince|title=A combined harmonic phase and strain-encoded pulse sequence for measuring three-dimensional strain|jrnl=mri|number=27(1):55-61|when=January 2009|doi=10.1016/j.mri.2008.05.020|pubmed=18619755|pmcid=2599804}}
{{iacl-pub|author=S.H. Ying, B.A. Landman, S. Chowdhury, A.H. Sinofsky, A. Gambini, S. Mori, D.S. Zee, and J.L. Prince|title=Orthogonal diffusion-weighted MRI measures distinguish region-specific degeneration in cerebellar ataxia subtypes|journal=J. Neurol.|number=256(11):1939-1942|when=November 2009|doi=10.1007/s00415-009-5269-1|pubmed=19653028|pmcid=2789274}}
{{iacl-pub|author=P.-L. Bazin, J.A. Bogovic, D.S. Reich, J.L. Prince, and D.L. Pham|title=Belief Propagation Based Segmentation of White Matter Tracts in DTI|conf=miccai2009|number=pp. 943-950|doi=10.1007/978-3-642-04268-3|pubmed=20426079}}
{{iacl-pub|author= B.A. Landman, P.-L. Bazin, S.A. Smith, and J.L. Prince|title=Robust Estimation of Spatially Variable Noise Fields |jrnl=mrm|when=62(2):500-509, August 2009|doi=10.1002/mrm.22013|pubmed=19526510|pmcid=2806192}}
{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging|jrnl=jmri|number=27(6):741-751|when=July 2009|doi=doi:10.1016/j.mri.2009.01.001|pubmed=19250784|pmcid=2733233}}
{{iacl-pub|author=N. Shiee, P.-L. Bazin, D.S. Reich, and D.L. Pham|title=Automated Cortical Reconstruction of Brains with Multiple Sclerosis|conf=isbi2009|doi=10.1109/ISBI.2009.5193311}}
{{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince|title=A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images|conf=isbi2009|doi=10.1109/ISBI.2009.5193070|pubmed=20126426|pmcid=2814436}}
{{iacl-pub|author=B.A. Landman, J.C. Hoyt, E.J. Sax, and K.P. Smith|title=NeuroWeb Database: A Laboratory Management System for Neuroimaging Coordination, Collaboration and Analysis|conf=hbm2009|doi=10.1016/S1053-8119(09)70586-5}}
{{iacl-pub|author=N. Shiee, P.-L. Bazin, and D.L. Pham|title=An Automated Pipeline for Cortical Reconstruction of Brains with MS|conf=hbm2009|doi=10.1016/S1053-8119(09)70836-5}}
{{iacl-pub|author=J. Bogovic, R. Nicoletto, B. Landman, J.L. Prince, and S. Ying|title=Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes|conf=hbm2009|doi=10.1016/S1053-8119(09)71895-6}}
{{iacl-pub|author=B.A. Landman, B.C. Lucas, J.A. Bogovic, A. Carass, and J.L. Prince|title=A Rapid Prototyping Environment for NeuroImaging in Java|conf=hbm2009|doi=10.1016/S1053-8119(09)70239-3}}
{{iacl-pub|author=J. Wan, A. Carass, P.-L. Bazin, S.H. Ying, and J.L. Prince|title=Automated Cerebellum Extraction From Whole Head 3D MR Images|conf=hbm2009|doi=10.1016/S1053-8119(09)71592-7}}
{{iacl-pub|author=M.E. Richardson, D. Crocetti, J. Wan, D.L. Pham, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky|title=Automated MRI Parcellation of the Frontal Lobe|conf=hbm2009|doi=doi:10.1016/S1053-8119(09)70451-3}}
{{iacl-pub|author=B.A. Landman|title=CATNAP and JIST: DTI Processing Made Ridiculously Simple|conf=ismrm2009}}
{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L Prince|title=Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets|conf=ismrm2009}}
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, and P.C.M. van Zijl|title=Optimal An Open Source Monte Carlo Framework for Simulating Diffusion in Biologically Relevant Geometries including Broken, Crimped and Bulging Axons|conf=ismrm2009}}
{{iacl-pub|author=K.R. Rocha, G. Sundaramoorthi, A.J. Yezzi, and J.L. Prince|title=3D Topology Preserving Flows for Viewpoint-Based Cortical Unfolding|journal=Int. J. Comput. Vis.|number=85(3):223-236|when=December 2009|doi=10.1007/s11263-009-0214-4|pubmed=19960105|pmcid=2786089}}
{{iacl-pub|author=L.M. Ellingsen and J.L. Prince|title=Mjolnir:Extending HAMMER Using a Diffusion Transformation Model and Histogram Equalization for Deformable Image Registration|journal=Int. J. Biomed. Imaging|number=2009:281615|when=August 2009|doi=10.1155/2009/281615|pubmed=19680457|pmcid=2724857}}
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A Moving Grid Framework for Geometric Deformable Models|jrnl=ijcv|number=84(1):63-79|when=August 2009|doi=10.1007/s11263-009-0231-3|pubmed=19946381|pmcid=2784682}}
{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Digital Topology on Adaptive Octree Grids|journal=J. Math Imaging Vis.|number=34(2):165-184|when=June 2009|doi=10.1007/s10851-009-0140-7|pubmed=20072715|pmcid=2805029}}
{{iacl-pub|author=J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince|title=Optimal Matching for Prostate Brachytherapy Seed Localization with Dimension Reduction|conf=miccai2009|doi=10.1007/978-3-642-04268-3_8|pdf=/proceedings/iacl/2009/LeexMICCAI09-OptimalMatchingBrachytherapy.pdf}}
{{iacl-pub|author=J. Lee, C. Labat, A.K. Jain, G. Fichtinger, and J.L. Prince|title=Reduced-Dimensionality Matching for 3-D Reconstruction of Prostate Brachytherapy Implants from Incomplete Data|conf=isbi2009|doi=10.1109/ISBI.2009.5193235|pdf=/proceedings/iacl/2009/LeexISBI09-BrachytherapyfromIncompleteData.pdf}}
{{iacl-pub|author=J. Lee, X. Liu, A.K. Jain, D.Y. Song, E.C. Burdette, J.L. Prince, and G. Fichtinger|title=Prostate Brachytherapy Seed Reconstruction with Gaussian Blurring and Optimal Coverage Cost|jrnl=tmi|number=28(12):1955-1968|when=December 2009|doi=10.1109/TMI.2009.2026412|pubmed=19605321|pdf=/proceedings/iacl/2009/LeexTMI09-Prostate_Brachytherapy_Seed_Reconstruction.pdf}}
{{iacl-pub|author=E.M. Boctor, N. Deshmukh, M.S. Ayad, C. Clarke, K. Dickie, M.A. Choti, and E.C. Burdette|title=Three-dimensional heat-induced echo-strain imaging for monitoring high-intensity acoustic ablation|conf=spie2009|doi=10.1117/12.811287}}
{{iacl-pub|author=M.S. Ayad, J. Lee, J.L. Prince, and G. Fichtinger|title=Prostate Brachytherapy Seed Localization Using a Mobile C-arm Without Tracking|conf=spie2009|doi=10.1117/12.811225|pubmed=20052296|pmcid=2801145}}
{{iacl-pub|author=O. Sadowsky, J. Lee, J.L. Prince, and R.H. Taylor|title=Enhancement of Mobile C-arm Cone-Beam Reconstruction Using Prior Anatomical Models|conf=spie2009|doi=10.1117/12.813405|pdf=/proceedings/iacl/2009/SadxSPIE09-Mobile_c-arm_cone-beam_rconstruction.pdf}}


{{h4|2008}}
{{iacl-pub|author=H.K. Agarwal, K.Z. Abd-Elmoniem, M. Schär, S. Kelle, J.L. Prince, and M. Stuber|title=Coronary magnetic resonance angiography using non spatially selective navigator excitations at 3T|conf=ismrm2008}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, and J.L. Prince|title=Direct Three-Dimensional Myocardial Strain Tensor Quantification and Tracking using zHARP|jrnl=mia|number=12(6):778-786|when=December 2008|doi=10.1016/j.media.2008.03.008|pubmed=18511332|pmcid=2590624}}
{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces|jrnl=tmi|number=27(12):1739-1753|when=December 2008|doi=10.1109/TMI.2008.925080|pubmed=19033090|pmcid=2597639}}
{{iacl-pub|author=N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, D.S. Reich, P.A. Calabresi, and D.L. Pham |title=Multiple Sclerosis Lesion Segmentation Using Statistical and Topological Atlases|conf=miccai2008}}
{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince |title=Tensor Interpolation by Concise Local Estimation of Anisotropy and Rotation |conf=miccai2008}}
{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L. Prince |title=Compressed Sensing of Multiple Intra-Voxel Orientations with Traditional DTI |conf=miccai2008}}
{{iacl-pub|author=B.A. Landman, J. Farrell, H. Huang, J.L. Prince, and S. Mori|title= Diffusion Tensor Imaging at Low SNR:Non-monotonic behaviors of tensor contrasts|jrnl=mri|number=26(6):790-800|when=July 2008|doi=10.1016/j.mri.2008.01.034|pubmed=18499378|pmcid=2583784}}
{{iacl-pub|author=A. Ozturk, A.D. Sasson, J.A.D. Farrell, B.A. Landman, A.C.B.S. da Motta, A. Aralasmak, and D.M. Yousem |title= Regional Differences in Diffusion Tensor Imaging Measurements: Assessment of Intra-Rater and Inter-Rater Variability|pub=American Journal of Neuroradiology|number=29:1124-1127|when=June 2008}}
{{iacl-pub|author=B. Lucas, B. Landman, J.L. Prince, and D. Pham|title=MAPS: A Free Medical Image Processing Pipeline|conf=hbm2008}}
{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Characterizing Regional Gray Matter Thickness Trends in Normal Aging|conf=hbm2008}}
{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity|conf=hbm2008}}
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince.|title= Robust Maximum Likelihood Estimation in Q-space MRI|conf=isbi2008|doi=10.1109/ISBI.2008.4541134}}
{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Automated Reliable Labeling of the Cortical Surface|conf=isbi2008|doi=10.1109/ISBI.2008.4541027}}
{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=Automatically identifying white matter tracts using cortical labels|conf=isbi2008|doi=10.1109/ISBI.2008.4541141|pubmed=20119500|pmcid=2812932}}
{{iacl-pub|author=S. Roy, H. Agarwal, A. Carass, Y. Bai, D.L. Pham, and J.L. Prince|title=Fuzzy C-Means with Variable Compactness|conf=isbi2008|doi=10.1109/ISBI.2008.4541030|pubmed=20126427|pmcid=2814437}}
{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust DTI Noise Level Estimation Improves RESTORE Tensor Estimation|conf=ismrm2008}}
{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=ismrm2008}}
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.C.M. van Zijl, and J.L. Prince|title=Q-Space Diffusion Weighted MRI Analyzed with Maximizing Rician Likelihood Improves Reliability and Tissue Contrast|conf=ismrm2008}}
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince|title=Exploring the Information Content of q-Space Diffusion Weighted Imaging: Application to Multiple Sclerosis (MS) Spinal Cord Lesions|conf=ismrm2008}}
{{iacl-pub|author=X. Fan, P.-L. Bazin, J. Bogovic, Y. Bai, and J.L. Prince|title=A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation|conf=cvpr2008|doi=10.1109/CVPRW.2008.4563013}}
{{iacl-pub|author=X. Fan, P.-L. Bazin, and J.L. Prince|title=A Multi-Compartment Segmentation Framework With Homeomorphic Level Sets|conf=cvpr2008|doi=10.1109/CVPR.2008.4587475|pubmed=23223164}}
{{iacl-pub|author=J. Lee, X. Liu, J.L. Prince, and G. Fichtinger|title=Prostate Brachytherapy Seed Localization with Gaussian Blurring and Camera Self-Calibration|conf=miccai2008|doi=10.1007/978-3-540-85990-1_76|pubmed=18982658|pdf=/proceedings/iacl/2008/LeexMICCAI08-Prostate_brachytherapy_seed_localization_Gaussian_blurring.pdf}}
{{iacl-pub|author=G. Chintalapani, A.K. Jain, D.H. Burkhardt, J.L. Prince, and G. Fichtinger|title=CTREC: C-arm tracking and reconstruction using elliptic curves|conf=cvpr2008|doi=10.1109/CVPRW.2008.4563029|pdf=/proceedings/iacl/2008/ChixMMBIA08-CTRAC.pdf}}
{{iacl-pub|author=J. Lee, X. Liu, A.K. Jain, J.L. Prince, and G. Fichtinger|title=Tomosynthesis-based Radioactive Seed Localization in Prostate Brachytherapy Using Modified Distance Map Images|conf=isbi2008|doi=10.1109/ISBI.2008.4541087|pubmed=20066153|pdf=/proceedings/iacl/2008/LeexISBI08-Tomosynthesis-based_radioactive_seed_localization.pdf}}


{{h4|2007}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, S. Sampath, N.F. Osman, and J.L. Prince|title=Real-Time Monitoring of Cardiac Regional Function Using FastHARP MRI and Region-of-Interest Reconstruction|jrnl=tbme|number=54(9):1650-1656|when=September 2007|doi=10.1109/TBME.2007.891946|pubmed=17867357}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber|title=Three-Dimensional Magnetic Resonance Myocardial Motion Tracking From a Single Image Plane|jrnl=mrm|number=58(1):92-102|when=July 2007|doi=10.1002/mrm.21267|pubmed=17659617}} 
{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, and J.L. Prince|title=Multi-slice Three-Dimensional Myocardial Strain Tensor Quantification Using zHARP|conf=ipmi2007|doi=10.1007/978-3-540-73273-0_6}}
{{iacl-pub|author=H.K. Agarwal and J.L. Prince|title=Fast Imaging of Dynamic Objects Using POCS Partial Fourier Reconstruction|conf=ismrm2007}}
{{iacl-pub|author=A. El-Sharkawy, K.Z. Abd-Elmoniem, J.L. Prince, and P. Bottomley|title=Simultaneous Temperature and Motion Tracking Using HARP MRI [T-HARP]|conf=ismrm2007}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, N.F. Osman, and J.L. Prince|title=Optimal z-Encoding Frequency for zHARP: In-vivo Validation and Comparison with SF-CSPAMM|conf=ismrm2007}} 
{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, N.F. Osman, and J.L. Prince|title=Accelerated Three-Dimensional Myocardial Strain Quantification using zHARP|conf=ismrm2007}}
{{iacl-pub|author=K.Z. Abd-Elmoniem and J.L. Prince|title=Total Removal of Unwanted Echoes in Harmonic Phase MRI (TRUE-HARP)|conf=ismrm2007}} 
{{iacl-pub|author=X. Liu and J.L. Prince|title=Fast and Robust HARP Tracking Using Region Growing|conf=ismrm2007}} 
{{iacl-pub|author=X. Liu, E. Murano, M. Stone, and J.L. Prince|title=HARP tracking refinement using seeded region growing|conf=isbi2007|doi=10.1109/ISBI.2007.356866}}
{{iacl-pub|author=H.K. Agarwal, K.Z. Abd-Elmoniem, and J.L. Prince|title=Fast Motion Imaging Using Reduced Field Of View Partial Fourier MRI|conf=isbi2007|doi=10.1109/ISBI.2007.356928}}
{{iacl-pub|author=H. Shinagawa, E.Z. Murano, J. Zhuo, R.P. Gullapalli, B. Landman, J.L. Prince, and M. Stone|title=Human Tongue Myoarchitecture with Oral Appliance, Using Diffusion Tensor Imaging|pub=International American and Canadian Associations for Dental Research|loc=New Orleans, Louisiana|when=March 2007}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, J. Terrovitis, M.R. Abraham, J.L. Prince, M. Stuber|title=Slice-Following CSPAMM Myocardial Tagging in Rats and on a Human High-Field System|conf=scmr2007}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, M. Stuber, N. Osman, and J.L. Prince|title=Toward Optimal Measure of 3-D Myocardium Displacements from a Single Slice Using zHARP: In-vivo Validation and Comparison with CSPAMM|conf=scmr2007}}
{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince.|title=Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=mmbia2007}}
{{iacl-pub|author=J.A. Farrell, B.A. Landman, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of SNR on the Accuracy and Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T |jrnl=jmri|number=26(3):756-767|when=August 2007|pubmed=17729339}}
{{iacl-pub|author=B.A. Landman, J.A. Farrell, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T|jrnl=ni|number=36(4):1123-1138|when=July 2007}}
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, N-L. Patel, S. Mori, and J.L. Prince|title=DTI Fiber Tracking: The Importance of Adjusting DTI Gradient Tables for Motion Correction. CATNAP – A Tool to Simplify and Accelerate DTI Analysis|conf=hbm2007}}
{{iacl-pub|author=B.A. Landman, A.X. Du, W.D. Mayes, J.L. Prince, and S.H. Ying|title=Diffusion Tensor Imaging Enables Robust Mapping of the Deep Cerebellar Nuclei|conf=hbm2007}}
{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=Tradeoffs Between Tensor Orientation and Anisotropy in DTI: Impact of Diffusion Weighting Scheme|conf=ismrm2007}}
{{iacl-pub|author=B.A. Landman, H. Huang, J.L. Prince, and S.H. Ying|title=A Window for High-Resolution Post-Mortem DTI: Mapping Contrast Changes in Neural Degeneration|conf=ismrm2007}}
{{iacl-pub|author=B.A. Landman, S. Mori, and J.L. Prince|title=Systematic Evaluation of Linear and Nonlinear DTI Estimation Methods: An Open Framework|conf=ismrm2007}}
{{iacl-pub|author=A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett, and J.L. Prince|title=A Joint Registration and Segmentation Approach to Skull Stripping|conf=isbi2007|doi=10.1109/ISBI.2007.356937}}
{{iacl-pub|author=P. Aksit, J.A. Derbyshire, and J.L. Prince|title=Three-point method for fast and robust field mapping for EPI geometric distortion correction|conf=isbi2007|doi=10.1109/ISBI.2007.356808}}
{{iacl-pub|author=G. Chintalapani, L.M. Ellingsen, O. Sadowsky, J.L. Prince, and R.H. Taylor|title=Statistical atlases of bone anatomy: construction, iterative improvement and validation|conf=miccai2007|number=10(1):499-506|doi=10.1007/978-3-540-75757-3_61|pubmed=18051096}}
{{iacl-pub|author=P.-L. Bazin, L.M. Ellingsen, and D.L. Pham|title=Digital homeomorphisms in deformable registration|conf=ipmi2007|number=20:211-222|when=2007|doi=10.1007/978-3-540-73273-0_18|pubmed=17633701}}
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=Fast numerical scheme for gradient vector flow computation using a multigrid method|journal=IET Image Processing|number=1(1):48-55|when=March 2007|doi=10.1049/iet-ipr:20050225}}
{{iacl-pub|author=K.R. Rocha, A.J. Yezzi, and J.L. Prince|title=A Hybrid Eulerian–Lagrangian Approach for Thickness, Correspondence, and Gridding of Annular Tissues|jrnl=tip|number=16(3):636-648|when=March 2007|doi=10.1109/TIP.2007.891072}}
{{iacl-pub|author=X. Liu, A.K. Jain, and G. Fichtinger|title=Prostate Implant Reconstruction with Discrete Tomography|conf=miccai2007|doi=10.1007/978-3-540-75757-3_89}}
{{iacl-pub|author=C. Labat, A. Jain, G. Fichtinger, and J.L. Prince|title=Toward Optimal Matching for 3D Reconstruction on Brachytherapy Seeds|conf=miccai2007|doi=10.1007/978-3-540-75759-7_85|pdf=/proceedings/iacl/2007/LabxMICCAI07-Toward_optimal_matching_for_reconstruction.pdf}}


{{h4|2006}}
{{iacl-pub|author=X. Liu, and M. Stone, and J.L. Prince|title=Tracking tongue motion in three dimensions using tagged MR image|conf=isbi2006|doi=10.1109/ISBI.2006.1625182}}
{{iacl-pub|author=H.K. Agarwal and J.L. Prince|title=Theoretical framework for analyzing MR imaging of dynamic objects using filters and downsamplers|conf=spie2006|doi=10.1117/12.653648}}
{{iacl-pub|author=K. Z. Abd-Elmoniem, V. Parthasarathy, and J.L. Prince|title=Artifact Reduction in HARP Strain Maps using Anisotropic Smoothing|conf=spie2006|doi=10.1117/12.656619}}
{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Octree-based Topology-preserving Isosurface Simplification|conf=mmbia2006}}
{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, A.S.K. Liu, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=Delineation of Cerebellar Fiber Tracts on Anatomically Aligned Planes with ViPAR, a Novel MRI Visualization and Manipulation Tool|conf=hbm2006}}
{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=s-Image Representation of Diffusion Tensor Contrast and Fiber Geometry: Leukometric Analysis in the Brainstem and Cerebellum|conf=hbm2006}}
{{iacl-pub|author=H. Huang, A. Carass, J.L. Prince, B. Landman, P.C.M. van Zijl, and S. Mori|title=Cortico-cortical Connectivity Revealed by DTI-based Tractography|conf=ismrm2006}}
{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=On the Coregistration of Diffusion Weighted Images|conf=ismrm2006}}
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S. Mori, P.C.M. van Zijl, and J.L. Prince|title=Optimal Partitioning of Diffusion Weighting Schemes|conf=ismrm2006}}
{{iacl-pub|author=P. Anbazhagan, A. Carass, P.-L. Bazin, and J.L. Prince|title=Automatic Estimation of Mid Sagittal Plane and AC-PC alignment based on Nonrigid Registration|conf=isbi2006|doi=10.1109/ISBI.2006.1625046}}
{{iacl-pub|author=L. Ellingsen and J.L. Prince|title=Mjolnir: Deformable image registration using feature diffusion|conf=spie2006|doi=10.1117/12.653221}}
{{iacl-pub|author=L.M. Ellingsen and J.L. Prince|title=Deformable Registration of CT Pelvis Images Using Mjolnir|conf=norsig2006|number=pp. 46-49|doi=10.1109/NORSIG.2006.275273|pdf=/proceedings/iacl/2006/EllxNORSIG06-Deformable_Registration_of_CT_Pelvis_Images.pdf}}
{{iacl-pub|author=L.M. Ellingsen and J.L. Prince|title=Mjolnir: Deformable Image Registration using Feature Diffusion|conf=spie2006|pdf=/proceedings/iacl/2006/EllxSPIE06-Mjolnir_Deformable_Image_Registration.pdf}}
{{iacl-pub|author=O. Sadowsky, K. Ramamurthi, L.M. Ellingsen, G. Chintalapani, J.L. Prince, and R.H. Taylor|title=Atlas-assisted Tomography: Registration of a Deformable Atlas to Compensate for Limited-angle Cone-beam Trajectory|conf=isbi2006|number=pp. 1244-1247|doi=10.1109/ISBI.2006.1625150|pdf=/proceedings/iacl/2006/SadxISBI06-Atlas-Assisted_Tomography.pdf}}


{{h4|2005}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber|title=zHARP:Simultaneous in-plane and through-plane displacement quantification. An algorithm for direct high-density 3-D cardiac displacement measurement|pub=Proceedings of the SCMR, Eighth Annual Scientific Sessions, Abstract 554|when=January 2005}}
{{iacl-pub|author=L. Pan, J.L. Prince, J.A.C. Lima, and N.F. Osman|title=Fast tracking of cardiac motion using 3D-HARP|jrnl=tbme|number=52(8):1425-1435|when=August 2005|doi=10.1109/TBME.2005.851490|pubmed=16119238}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, M. Stuber, and J.L. Prince|title=ZHARP: Three-Dimensional Motion Tracking From a Single Image Plane|conf=ipmi2005}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber|title=zHARP:  Simultaneous in-plane and through-plane displacement quantification. An algorithm for direct high-density 3-D cardiac displacement measurement|pub=Proceedings of the SCMR, Eighth Annual Scientific Sessions, Abstract 554|when=January 2005}}
{{iacl-pub|author=Y. Bai, X. Han, D. Pham, and J.L. Prince|title=Super-resolved multi-channel fuzzy segmentation of MR brain images|conf=spie2005}}
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A 2D Moving Grid Geometric Deformable Model|conf=cvpr2003|doi=10.1109/CVPR.2003.1211349}}
{{iacl-pub|author=A. Yezzi and J.L. Prince|title=An Eulerian PDE approach for computing tissue thickness|jrnl=tmi|number=22(10):1332–1339|when=October 2003|doi=10.1109/TMI.2003.817775|pubmed=14552586}}
{{iacl-pub|author=O. Sadowsky, K. Ramamurthi, J.L. Prince, and R.H. Taylor|title=Using anatomical models and fast rendering algorithms for C-arm pose recovery and cone-beam tomographic reconstruction of bone anatomy|pub=5th Annual Meeting of the International Society, for Computer Assisted Orthopaedic Surgery|loc=Helsinki, Finland|when=June 19-22, 2005}}


{{h4|2004}}
{{iacl-pub|author=N.F. Osman and J.L. Prince|title=Regenerating MR tagged images using harmonic phase (HARP) methods|jrnl=tbme|number=51(8):1428-1433|when=August 2004|doi=10.1109/TBME.2004.827932}}
{{iacl-pub|author=L. Pan, J.L. Prince, J.A.C. Lima, and  N.F. Osman|title=Validation of 3D-HARmonic Phase (3D-HARP) for Cardiac Motion Estimation|conf=ismrm2004}}
{{iacl-pub|author=V. Parthasarathy and J.L. Prince|title=Artifact Reduction in HARP Strain Maps|conf=ismrm2004}}
{{iacl-pub|author=S. Sampath and J.L. Prince|title=3D Tracking of Cardiac Material Points Using a Combined Slice-Following Harmonic Phase (SF-HARP) Magnetic Resonance Imaging Approach|conf=ismrm2004}}
{{iacl-pub|author=V. Parthasarathy, M. Ness-Aiver, and J.L. Prince|title=Dynamic range of harmonic phase magnetic resonance imaging (HARP-MRI)|conf=isbi2004}}
{{iacl-pub|author=S. Sampath and J.L. Prince|title=Imaging the Evolution of Three-dimensional myocardial strains using a Fast MR Imaging Technique|conf=isbi2004}}
{{iacl-pub|author=D. Tosun, M.E. Rettmann, D.Q. Naiman, S.M. Resnick, M.A. Kraut, and J.L. Prince|title=Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study|conf=miccai2004}}
{{iacl-pub|author=X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J.L. Prince|title=CRUISE: Cortical Reconstruction Using Implicit Surface Evolution|jrnl=ni|number=23(3):997-1012|when=2004|doi=10.1016/j.neuroimage.2004.06.043}}
{{iacl-pub|author=D. Pham and J.L. Prince|title=Robust Unsupervised Tissue Classification in MR Images|conf=isbi2004|doi=10.1109/ISBI.2004.1398486}}
{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=An Automated Method for Finding Curves of Sulcal Fundi on the Human Cortical Surface|conf=isbi2004|doi=10.1109/ISBI.2004.1398777}}
{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Super-resolution Reconstruction of MR Brain Images|conf=ciss2004}}
{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Han, X. Tao, C. Xu, S.M. Resnick, D. Pham, and J.L. Prince|title=Cortical Surface Segmentation and Mapping|jrnl=ni|number=23:S108-S118|when=2004|doi=10.1016/j.neuroimage.2004.07.042|pubmed=15501080}}
{{iacl-pub|author=D. Tosun and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|jrnl=mia|number=8:295-309|when=2004|doi=10.1016/j.media.2004.06.020}}
{{iacl-pub|author=K. Ramamurthi, J.L. Prince, and N. Strobel|title= Exact 3D cone-beam reconstruction from projections obtained over a Wobble trajectory on a C-arm|conf=isbi2004|doi=10.1109/ISBI.2004.1398692|pdf=/proceedings/iacl/2004/RamxISBI04-Extract_3D_Cone-beam_reconstruction.pdf}}


{{h4|2003}}
{{iacl-pub|author=K.Z. Abd-Elmoniem and J.L. Prince|title=Algorithms for Real-Time FastHARP Cardiac Function Analysis|conf=miccai2003}}
{{iacl-pub|author=N.F. Osman, S. Sampath, J.A. Derbyshire, M. Stuber, D. Kraitchman, and J.L. Prince|title=Quantitative Imaging of Myocardial Function with No Breath-holding Using Fast Strain-Encoded (SENC)|conf=ismrm2003}}
{{iacl-pub|author=N.F. Osman, J. Garot, B. Gerber, K. Wu, D. Kraitchman, J.A.C. Lima, and J.L. Prince|title=Strain Encoded (SENC) Imaging Detects Regional Dysfunction in the Heart without Image Processing|conf=ismrm2003}}
{{iacl-pub|author=K.Z. Abd-Elmoniem, S. Sampath, N.F. Osman, and J.L. Prince|title=Tool for Automatic Real-Time Regional Cardiac Function Analysis using HARP|conf=spie2003}}
{{iacl-pub|author=S. Sampath, J.A. Derbyshire, N.F. Osman, and J.L. Prince|title=Real-time imaging of cardiac strain using FastHARP: a comparison between breath-hold and non-breath-hold studies|conf=scmr2003}}
{{iacl-pub|author=D. Tosun, M.E. Rettmann, and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|conf=miccai2003}}
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A topology preserving level set method for geometric deformable models|jrnl=pami|number=25(6):755-768|when=June 2003|doi=10.1109/TPAMI.2003.1201824}}
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=Topology-Preserving Geometric Deformable Models and Brain Reconstruction|pub=Geometric Level Set Methods in Imaging, Vision, and Graphics|loc=Edited by Stanley Osher and Nikos Paragios, Springer-Verlag|when=2003|doi=10.1007/0-387-21810-6_22}}
{{iacl-pub|author=K.J. Behnke, M.E. Rettmann, D.L. Pham, D. Shen, S.M. Resnick, C. Davatzikos, and J.L. Prince|title=Automatic classification of sulcal regions of the human brain cortex using pattern recognition|conf=spie2003|pnumber=p153|doi=10.1117/12.480834}}
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A 2D Moving Grid Geometric Deformable Model|conf=cvpr2003|doi=10.1109/CVPR.2003.1211349}}
{{iacl-pub|author=A. Yezzi and J.L. Prince|title=An Eulerian PDE approach for computing tissue thickness|jrnl=tmi|number=22(10):1332–1339|when=October 2003|doi=10.1109/TMI.2003.817775|pubmed=14552586}}
{{iacl-pub|author=K. Ramamurthi and J.L. Prince|title=Region of interest cone beam tomography with prior CT data|pub=Conference Record of the Thirty-Seventh Asilomar Conference on Signals, Systems and Computers|number=2:1924-1927|when=November 9-12 2003|loc=Pacific Grove, CA|doi=10.1109/ACSSC.2003.1292317|pdf=/proceedings/iacl/2003/RamxCSSC03-Region_of_interest_cone-beam_tomography.pdf}}


{{h4|2002}}
{{iacl-pub|author=S. Sampath, V. Parthasarathy, and J.L. Prince|title=A phantom validation of the FastHARP pulse sequence|conf=isbi2002|doi=10.1109/ISBI.2002.1029207}}
{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain|jrnl=tmi|when=21(5):513-524, May 2002|doi=10.1109/TMI.2002.1009387|pubmed=12071622}}
{{iacl-pub|author=X. Han, C. Xu, U. Braga-Neto, and J.L. Prince|title=Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm|jrnl=tmi|when=21(2):109-121, February 2002|doi=10.1109/42.993130|pubmed=11929099}}
{{iacl-pub|author=M.E. Rettmann, X. Tao, and J.L. Prince|title=Assisted labeling techniques for the human brain cortex|conf=spie2002|pnumber=p148|doi=10.1117/12.467134}}
{{iacl-pub|author=D.L. Pham, X. Han, M.E. Rettmann, C. Xu, D. Tosun, S.M. Resnick, and J.L. Prince|title=New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm|conf=spie2002|pnumber=p147|doi=10.1117/12.467145}}
{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=Kriging Filters for Space Time Interpolation|pub=Advances in Imaging and Electron Physics|number=124:139-193|when=November 2002}}
{{iacl-pub|author=M. NessAiver and J.L. Prince|title=Magnitude Image CSPAMM Reconstruction (MICSR) Improves Tag Contrast and Persistence|pub=ESMRMB|loc=Cannes, France|when=August 22-25 2002|pubmed=12876710|doi=10.1002/mrm.10523}}
{{iacl-pub|author=J.M. Links and J.L. Prince|title=Restoration of Multi-collimator/Multi-head SPECT Data Via the Vector Wiener Filter|pub=SNM 49th Annual Mtg.|loc=Los Angeles, California|when=June 16, 2002}}
{{iacl-pub|author=A. Yezzi and J.L. Prince|title=A PDE Approach for Thickness, Correspondence, and Gridding of Annular Tissues|pub=Proc. Europ. Conf. Comput. Vis. (ECCV)|loc=Copenhagen, Denmark|when=May 2002}}


{{h4|2001}}
{{iacl-pub|author=D.L. Kraitchman, S. Sampath, J.A. Derbyshire, D.A. Bluemke, B.L. Gerber, J.L. Prince, and N.F. Osman|title=Quantitative ischemia detection during cardiac MR stress testing|conf=ebms2001|number=3:2598-2601|doi=}}
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A Topology Preserving Deformable Model Using Level Sets|conf=cvpr2001|number=2:765-770|loc=Kauai, Hawai|when=8-14 December 2001|pnumber=p131|doi=10.1109/CVPR.2001.991042}}
{{iacl-pub|author=X. Han, C. Xu, D. Tosun, and J.L. Prince|title=Cortical Surface Reconstruction Using a Topology Preserving Geometric Deformable Model|conf=mmbia2001|doi=10.1109/MMBIA.2001.991736}}
{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Automated Parcellation of the Cortical Surface for Computation of Regional Gyrification Indices|conf=hbm2001}}
{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Tao, X. Han, C. Xu, and J.L. Prince|title=Calculation of Human Cerebral Cortical Thickness on Opposing Sulcal Banks|conf=hbm2001}}
{{iacl-pub|author=X. Tao, X. Han, M.E. Rettmann, J.L. Prince, and C. Davatzikos|title=Statistical Study on Cortical Sulci of Human Brains|conf=ipmi2001}}
{{iacl-pub|author=X. Han, C. Xu, M.E. Rettmann, and J.L. Prince|title=Automatic Segmentation Editing for Cortical Surface Reconstruction|conf=spie2001}}
{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Hemispherical Map for the Human Brain Cortex|conf=spie2001}}
{{iacl-pub|author=A. Yezzi and J.L. Prince|title=A PDE Approach for Measuring Tissue Thickness|conf=cvpr2001|doi=10.1109/CVPR.2001.990460}}
{{iacl-pub|author=D.L. Pham|title=Spatial Models for Fuzzy Clustering|pub=Computer Vision and Image Understanding|number=84(2):285-297|when=2001|doi=10.1006/cviu.2001.0951}}
{{iacl-pub|author=C. Xu, A. Yezzi, Jr., and J.L. Prince|title=A Summary of Geometric Level-Set Analogues for a General Class of Parametric Active Contour and Surface Models|pub=Proc. of 2001 IEEE Workshop on Variational and Level Set Methods in Computer Vision (VLSM 2001)|number=104-111|when=July 2001|doi=10.1109/VLSM.2001.938888}}


{{h4|2000}}
{{iacl-pub|author=N.F. Osman and J.L. Prince|title=Visualizing myocardial function using HARP MRI|journal=Physics in Medicine and Biology|number=45(6):1665-1682|when=June 2000|doi=10.1088/0031-9155/45/6/318|pubmed=10870717}}
{{iacl-pub|author=N.F. Osman, E.R. McVeigh, and J.L. Prince|title=Imaging heart motion using harmonic phase MRI|jrnl=tmi|number=19(3):186-202|when=March 2000|pnumber=p111|doi=10.1109/42.845177|pubmed=10875703}}
{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Watersheds on the Cortical Surface for Automated Sulcal Segmentation|conf=mmbia2000|number=pp. 20-27|doi=10.1109/MMBIA.2000.852356}}
{{iacl-pub|author=M.E. Rettmann, X. Han, D.L. Pham, and J.L. Prince|title=Geodesics for Sulcal Segmentation and Depth Measurements|conf=hbm2000}}
{{iacl-pub|author=D. Yu, C. Xu, and J.L. Prince|title=A New Surface Editing Tool for Generating Truth Models of the Human Cortical Surface|conf=hbm2000}}
{{iacl-pub|author=C. Xu, X. Han, and J.L. Prince|title=Improving Cortical Surface Reconstruction Accuracy Using an Anatomically Consistent Gray Matter Representation|conf=hbm2000}}
{{iacl-pub|author=X. Han, M.E. Rettmann, C. Xu, and J.L. Prince|title=Morphology on Triangle Meshes Using Geodesic Distance|conf=ciss2000}}
{{iacl-pub|author=D.N. Yu, C. Xu, M.E. Rettmann, D.L. Pham, and J.L. Prince|title=Quantitative Validation of a Deformable Cortical Surface Model|conf=spie2000|doi=10.1117/12.387673}}
{{iacl-pub|author=D. Yu|title=Quantitative Validation of a Cortical Surface Reconstruction Method|pub=MSE thesis, The Johns Hopkins University|when=January, 2000}}
{{iacl-pub|author=N.F. Osman and J.L. Prince|title=On the design of the bandpass filters in harmonic phase MRI|conf=icip2000|doi=10.1109/ICIP.2000.901036}}
{{iacl-pub|author=W.S. Kerwin and J.L. Prince|title=On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs|journal=Automatica|number=36(9):1381-1383|when=September 2000|doi=10.1016/S0005-1098(00)00046-7}}
{{iacl-pub|author=C. Tu, T.D. Tran, J.L. Prince, and P.N. Topiwala|title=Projection-based block motion estimation for video coding|pub=Proc. SPIE Applications of Digital Image Processing XXIII, San Diego, California|when=August 2000}}
{{iacl-pub|author=D. L. Pham and J. L. Prince|title=Unsupervised partial volume estimation in single-channel image data|conf=mmbia2000|doi=10.1109/MMBIA.2000.852375}}
{{iacl-pub|author=C. Xu, D.L. Pham, and J.L. Prince|title=Medical Image Segmentation Using Deformable Models|pub=SPIE Handbook on Medical Imaging -- Volume III: Medical Image Analysis|when=edited by J.M. Fitzpatrick and M. Sonka, May 2000}}
{{iacl-pub|author=D.L. Pham, C. Xu, and J.L. Prince|title=Current Methods in Medical Image Segmentation|pub=Annual Review of Biomedical Engineering|number=2:315-338|when=2000|doi=11701515}}
{{iacl-pub|author=C. Xu, A. Yezzi, and J.L. Prince|title=On the Relationship between Parametric and Geometric Active Contours|pub=Proc. of 34th Asilomar Conference on Signals, Systems, and Computers,|number=483-489|when=October 2000|doi=10.1109/ACSSC.2000.911003}}
{{iacl-pub|author=C. Xu and J.L. Prince|title=Gradient Vector Flow Deformable Models|pub=Handbook of Medical Imaging|when=edited by Isaac Bankman, Academic Press, September, 2000}}
{{iacl-pub|author=X. Han, M.E. Rettmann, C. Xu, and J.L. Prince|title=Morphology on Triangle Meshes Using Geodesic Distance|conf=ciss2000}}
{{iacl-pub|author=C. Xu and J.L. Prince|title=Global Optimality of Gradient Vector Flow|conf=ciss2000}}