Difference between revisions of "Publications/2019"

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{{iacl-pub|author=B.E. Dewey, C. Zhao, J.C. Reinhold, A. Carass, K.C. Fitzgerald, E.S. Sotirchos, S. Saidha, J. Oh, D.L. Pham, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince|title=DeepHarmony: A deep learning approach to contrast harmonization across scanner changes|jrnl=mrm|number=64:160-170|when=2019|doi=10.1016/j.mri.2019.05.041|pubmed=31301354}}
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{{iacl-pub|author=C. Zhao, M. Shao, A. Carass, H. Li, B.E. Dewey, L.M. Ellingsen, J. Woo, M.A. Guttman, A.M. Blitz, M. Stone, P.A. Calabresi, H. Halperin, and J.L. Prince|title=Applications of a deep learning method for anti-aliasing and super-resolution in MRI|jrnl=mrm|number=64:132-141|when=2019|doi=10.1016/j.mri.2019.05.038|pubmed=31247254}}
 
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{{iacl-pub|author=S. Han, A. Carass, and J.L. Prince|title=Hierarchical Parcellation of the Cerebellum|conf=miccai2019|number=484-491|when=2019|doi=10.1007/978-3-030-32248-9_54}}
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{{iacl-pub|author=Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=Fully Convolutional Boundary Regression for Retina OCT Segmentation|conf=miccai2019|number=120-128|when=2019|doi=10.1007/978-3-030-32239-7_14}}
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{{iacl-pub|author=C. Zhao, S. Son, Y. Kim, and J.L. Prince|title=iSMORE: An Iterative Self Super-Resolution Algorithm|when=Simulation and Synthesis in Medical Imaging (SASHIMI&nbsp;2019) held in conjunction with the {{iacl-pub miccai2019}}|number=130-139|period=|doi=10.1007/978-3-030-32778-1_14}}
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{{iacl-pub|author=Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT|jrnl=bmoe||when=2019|number=10(10):5042-5058|doi=10.1364/BOE.10.005042}}
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{{iacl-pub|author=F. Xing, M. Stone, T. Goldsmith, J.L. Prince, G. El Fakhri, and J. Woo|title=Atlas-Based Tongue Muscle Correlation Analysis From Tagged and High-Resolution Magnetic Resonance Imaging|journal=J. Speech Lang. Hear. Res.|when=2019|number=62(7):2258-2269|doi=10.1044/2019_JSLHR-S-18-0495|pubmed=31265364}}
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{{iacl-pub|author=M. Shao, S. Han, A. Carass, X. Li A.M. Blitz, J. Shin, J.L.Prince, and L.M. Ellingsen|title=Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly|journal=NeuroImage: Clinical|number=23:101871|when=2019|doi=10.1016/j.nicl.2019.101871|pubmed=31174103}}
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{{iacl-pub|author=J. Woo, F. Xing, J.L. Prince, M. Stone, J.R. Green, T. Goldsmith, T.G. Reese, V.J. Wedeen, and G. El Fakhri|title=Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning|journal=J. Acoust. Soc. Am.|number=145(5):EL423|when=2019|doi=10.1121/1.5103191|pubmed=31153323}}
 
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{{iacl-pub|author=Y. Liu, A. Carass, A. Filippatou, Y. He, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=Projection Artifact Suppression for Inner Retina in OCT Angiography|conf=isbi2019|doi=}}
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{{iacl-pub|author=Y. Liu, A. Carass, A. Filippatou, Y. He, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=Projection Artifact Suppression for Inner Retina in OCT Angiography|conf=isbi2019|doi=10.1109/ISBI.2019.8759466}}
 
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{{iacl-pub|author=D. Li, J. Wu, Y. He, X. Yao, W. Yuan, D. Chen, H.-C. Park, S. Yu, J.L. Prince, and X. Li|title=Parallel deep neural networks for endoscopic OCT image segmentation|jrnl=bmoe|number=10(3):1126-1135|when=2019|doi=10.1364/BOE.10.001126}}
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{{iacl-pub|author=O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha|title=Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures|journal=Mult. Scler.|number=1352458519845116|when=2019|doi=10.1177/1352458519845116|pubmed=31094280}}
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{{iacl-pub|author=N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski|title=Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS|journal=Ann Clin Transl Neurol|6(3):586-595|when=2019|doi=10.1002/acn3.734|pubmed=30911581}}
 
{{iacl-pub|author=J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri|title=A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI|jrnl=tmi|number=38(3):730-740|when=2019|doi=10.1109/TMI.2018.2870939}}
 
{{iacl-pub|author=J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri|title=A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI|jrnl=tmi|number=38(3):730-740|when=2019|doi=10.1109/TMI.2018.2870939}}
 
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{{iacl-pub|author=D. Li, J. Wu, Y. He, X. Yao, W. Yuan, D. Chen, H.-C. Park, S. Yu, J.L. Prince, X. Li|title=Parallel deep neural networks for endoscopic OCT image segmentation|jrnl=bmoe|number=10(3):1126-1135|when=2019|doi=10.1364/BOE.10.001126|pubmed=30891334}}
 
{{iacl-pub|author=Y. Liu, A. Carass, Y. He, B.J. Antony, A. Filippatou, S. Saidha, S.D. Solomon, P.A. Calabresi, and J.L. Prince|title=Layer boundary evolution method for macular OCT layer segmentation|jrnl=bmoe|number=10(3):1064-1080|when=2019|doi=10.1364/BOE.10.001064|pubmed=30891330|pmcid=6420297}}
 
{{iacl-pub|author=Y. Liu, A. Carass, Y. He, B.J. Antony, A. Filippatou, S. Saidha, S.D. Solomon, P.A. Calabresi, and J.L. Prince|title=Layer boundary evolution method for macular OCT layer segmentation|jrnl=bmoe|number=10(3):1064-1080|when=2019|doi=10.1364/BOE.10.001064|pubmed=30891330|pmcid=6420297}}
 
{{iacl-pub|author=A.M. Ghanem, A.H. Hamimi, J.R. Matta, A. Carass, R.M. Elgarf, A.M. Gharib, and K.Z. Abd-Elmoniem|title=Dual Level-Set Framework for 3D Coronary Artery Wall Segmentation from Coronary CT Angiography|journal=Nature Scientific Reports|number=9:47|when=2019|doi=10.1038/s41598-018-37168-4|pubmed=|pmcid=}}
 
{{iacl-pub|author=A.M. Ghanem, A.H. Hamimi, J.R. Matta, A. Carass, R.M. Elgarf, A.M. Gharib, and K.Z. Abd-Elmoniem|title=Dual Level-Set Framework for 3D Coronary Artery Wall Segmentation from Coronary CT Angiography|journal=Nature Scientific Reports|number=9:47|when=2019|doi=10.1038/s41598-018-37168-4|pubmed=|pmcid=}}
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{{iacl-pub|author=Y. He, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=Retinal layer parcellation of optical coherence tomography images: Data resource for Multiple Sclerosis and Healthy Controls|journal=Data in Brief|number=22:601-604|when=2019|doi=10.1016/j.dib.2018.12.073|pubmed=30671506|pmcid=6327073}}
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{{iacl-pub|author=Y. He, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=[[OCT Data|Retinal layer parcellation of optical coherence tomography images: Data resource for Multiple Sclerosis and Healthy Controls]]|journal=Data in Brief|number=22:601-604|when=2019|doi=10.1016/j.dib.2018.12.073|pubmed=30671506|pmcid=6327073}}
 
{{iacl-pub|author=Y.-C. Lu, N.P. Daphalapurkar, A.K. Knutsen, J. Glaister, D.L. Pham, J.A. Butman, J.L. Prince, P.V. Bayly, and K.T. Ramesh|title=A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium|journal=Ann. Biomed. Eng.|when=2019|doi=10.1007/s10439-019-02226-z}}
 
{{iacl-pub|author=Y.-C. Lu, N.P. Daphalapurkar, A.K. Knutsen, J. Glaister, D.L. Pham, J.A. Butman, J.L. Prince, P.V. Bayly, and K.T. Ramesh|title=A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium|journal=Ann. Biomed. Eng.|when=2019|doi=10.1007/s10439-019-02226-z}}
 
{{iacl-pub|author=E.S. Sotirchos, N. Gonzalez-Caldito, B.E. Dewey, K.C. Fitzgerald, J. Glaister, A. Filippatou, E. Ogbuokiri, S. Feldman, O. Kwakyi, H. Risher, C. Crainiceanu, D.L. Pham, P.C. Van Zijl, E.M. Mowry, D.S. Reich, J.L. Prince, P.A. Calabresi, and S. Saidha|title=Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis|journal=Multiple Sclerosis Journal|when=2019|doi=10.1177/1352458519826364}}
 
{{iacl-pub|author=E.S. Sotirchos, N. Gonzalez-Caldito, B.E. Dewey, K.C. Fitzgerald, J. Glaister, A. Filippatou, E. Ogbuokiri, S. Feldman, O. Kwakyi, H. Risher, C. Crainiceanu, D.L. Pham, P.C. Van Zijl, E.M. Mowry, D.S. Reich, J.L. Prince, P.A. Calabresi, and S. Saidha|title=Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis|journal=Multiple Sclerosis Journal|when=2019|doi=10.1177/1352458519826364}}
 
{{iacl-pub|author=N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al‐Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, and K.M. Zackowski|title=Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS|journal=Annals of Clinical and Translational Neurology|number=6(3):586-595|when=2019|doi=10.1002/acn3.734}}
 
{{iacl-pub|author=N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al‐Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, and K.M. Zackowski|title=Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS|journal=Annals of Clinical and Translational Neurology|number=6(3):586-595|when=2019|doi=10.1002/acn3.734}}

Latest revision as of 01:12, 3 July 2022

2019

  • B.E. Dewey, C. Zhao, J.C. Reinhold, A. Carass, K.C. Fitzgerald, E.S. Sotirchos, S. Saidha, J. Oh, D.L. Pham, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince, "DeepHarmony: A deep learning approach to contrast harmonization across scanner changes", Magnetic Resonance in Medicine, 64:160-170, 2019. (doi) (PubMed)
  • C. Zhao, M. Shao, A. Carass, H. Li, B.E. Dewey, L.M. Ellingsen, J. Woo, M.A. Guttman, A.M. Blitz, M. Stone, P.A. Calabresi, H. Halperin, and J.L. Prince, "Applications of a deep learning method for anti-aliasing and super-resolution in MRI", Magnetic Resonance in Medicine, 64:132-141, 2019. (doi) (PubMed)
  • S. Han, A. Carass, and J.L. Prince, "Hierarchical Parcellation of the Cerebellum", 22nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019. (doi)
  • Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Fully Convolutional Boundary Regression for Retina OCT Segmentation", 22nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019. (doi)
  • C. Zhao, S. Son, Y. Kim, and J.L. Prince, "iSMORE: An Iterative Self Super-Resolution Algorithm", 130-139, Simulation and Synthesis in Medical Imaging (SASHIMI 2019) held in conjunction with the 22nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019. (doi)
  • Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT", Biomedical Optics Express, 10(10):5042-5058, 2019. (doi)
  • F. Xing, M. Stone, T. Goldsmith, J.L. Prince, G. El Fakhri, and J. Woo, "Atlas-Based Tongue Muscle Correlation Analysis From Tagged and High-Resolution Magnetic Resonance Imaging", J. Speech Lang. Hear. Res., 62(7):2258-2269, 2019. (doi) (PubMed)
  • M. Shao, S. Han, A. Carass, X. Li A.M. Blitz, J. Shin, J.L.Prince, and L.M. Ellingsen, "Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly", NeuroImage: Clinical, 23:101871, 2019. (doi) (PubMed)
  • J. Woo, F. Xing, J.L. Prince, M. Stone, J.R. Green, T. Goldsmith, T.G. Reese, V.J. Wedeen, and G. El Fakhri, "Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning", J. Acoust. Soc. Am., 145(5):EL423, 2019. (doi) (PubMed)
  • Y. Liu, A. Carass, A. Filippatou, Y. He, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Projection Artifact Suppression for Inner Retina in OCT Angiography", 16th IEEE International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, April 8 - 11, 2019. (doi)
  • O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha, "Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures", Mult. Scler., 1352458519845116, 2019. (doi) (PubMed)
  • N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Ann Clin Transl Neurol, 2019. (doi) (PubMed)
  • J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri, "A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI", IEEE Trans. on Medical Imaging, 38(3):730-740, 2019. (doi)
  • H.E. Atlason, M. Shao, V. Robertsson, S. Sigurdsson, V. Gudnason, J.L. Prince, and L.M. Ellingsen, "Large-scale parcellation of the ventricular system using convolutional neural networks", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi)
  • J.C. Reinhold, B.E. Dewey, A. Carass, and J.L. Prince, "Evaluating the impact of intensity normalization on MR Image Synthesis", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi)
  • L. Zuo, S. Han, A. Carass, S.H. Ying, C.U. Onyike, and J.L. Prince, "Automatic Quality Control Using Hierarchical Shape Analysis", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi)
  • S. Han, Y. He, A. Carass, S.H. Ying, and J.L. Prince, "Cerebellum parcellation with convolutional neural networks", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi)
  • D. Li, J. Wu, Y. He, X. Yao, W. Yuan, D. Chen, H.-C. Park, S. Yu, J.L. Prince, X. Li, "Parallel deep neural networks for endoscopic OCT image segmentation", Biomedical Optics Express, 10(3):1126-1135, 2019. (doi) (PubMed)
  • Y. Liu, A. Carass, Y. He, B.J. Antony, A. Filippatou, S. Saidha, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Layer boundary evolution method for macular OCT layer segmentation", Biomedical Optics Express, 10(3):1064-1080, 2019. (doi) (PubMed) (PMCID 6420297)
  • A.M. Ghanem, A.H. Hamimi, J.R. Matta, A. Carass, R.M. Elgarf, A.M. Gharib, and K.Z. Abd-Elmoniem, "Dual Level-Set Framework for 3D Coronary Artery Wall Segmentation from Coronary CT Angiography", Nature Scientific Reports, 9:47, 2019. (doi)
  • Y. He, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Retinal layer parcellation of optical coherence tomography images: Data resource for Multiple Sclerosis and Healthy Controls", Data in Brief, 22:601-604, 2019. (doi) (PubMed) (PMCID 6327073)
  • Y.-C. Lu, N.P. Daphalapurkar, A.K. Knutsen, J. Glaister, D.L. Pham, J.A. Butman, J.L. Prince, P.V. Bayly, and K.T. Ramesh, "A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium", Ann. Biomed. Eng., 2019. (doi)
  • E.S. Sotirchos, N. Gonzalez-Caldito, B.E. Dewey, K.C. Fitzgerald, J. Glaister, A. Filippatou, E. Ogbuokiri, S. Feldman, O. Kwakyi, H. Risher, C. Crainiceanu, D.L. Pham, P.C. Van Zijl, E.M. Mowry, D.S. Reich, J.L. Prince, P.A. Calabresi, and S. Saidha, "Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis", Multiple Sclerosis Journal, 2019. (doi)
  • N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al‐Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, and K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Annals of Clinical and Translational Neurology, 6(3):586-595, 2019. (doi)
Retrieved from "https://iacl.ece.jhu.edu/index.php?title=Publications/2019&oldid=17886"