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Navid Shiee
Software Engineer
Google Inc.


E-mail:nshiee@google.com

Education

Research

Awards

  •  Third best result in the Multiple Sclerosis Lesion Segmentation Challenge,  11th International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI) workshop on 3D Segmetnation in the Clinic: A Grand Challenge II, New York, 2008


Publications


Google scholar citation report

Journal Publications and Book Chapters

  1. Landman, B.A., Bogovic, J.A., Carass, A. , Chen. M., Roy, S., Shiee, N., Yang, Z., Kishore, B., Pham, D.L., Bazin, P.-L., Resnick, S, Prince, J.L., 2012. System for Integrated Neuroimaging Analysis and Processing of Structure. Neuroinformatics, Epub ahead of print.

  2. Saidha, S., Sotirchos, E.S., Oh, J., Syc, S.B., Seigo, M.A., Shiee, N., Eckstein, C., Durbin, M.K., Oakley, J.D., Meyer, S.A., Frohman, T.C., Newsome, S., Ratchford, J.A., Balcer, L.J., Pham, D.L., Crainiceanu, C.M., Frohman, E.M., Reich, D.S., Calabresi, P.A., 2012. Retinal axonal and neuronal measures in multiple sclerosis reflect global CNS pathology. Archives of Neurology, Epub ahead of print.
  3. Harrison, D.M., Shiee, N., Bazin, P.-L., Newsome ,S.D., Ratchford, J.N., Pham, D.L., Calabresi, P.A., Reich, D.S.,2012. Tract-specific quantitative MRI better correlates with disability than conventional MRI in multiple sclerosis. Journal of Neurology, Epub. ahead of print.
  4. Shiee, N., Bazin, P.-L., Zackowski, K.M., Farrel, S.K., Harrison, D.M., Newsome, S.D., Ratchford, J.N., Caffo, B.S., Calabresi, P.A., Pham, D.L., Reich, D.S., 2012. Revisiting brain atrophy and its relationship to disability in multiple sclerosis. PLoS One, 7(5), e37042.

  5. Ratchford, J.N., Endres, C.J., Hammoud, D.A., Pomper, M.G., Shiee, N., McGready, J., Pham, D.L., Calabresi, P.A., 2012. Decreased microglial activation in MS patients treated with glatiramer acetate. Journal of Neurology, 259(6), 1199-1205.

  6. Bazin, P.-L., Shiee, N., Ellingsen, L., Prince, J.L., Pham, D.L., 2011. Digital topology in brain image segmentation and registration. In: El-Baz A.S., Acharya U.R., Mirmehdi M., Suri J.S., editors. Multi Modality State-of-the-Art Medical Image Segmentation and Registration Methodologies. Springer US. pp. 339-75.

  7. Bazin, P.-L., Ye, C., Bogovic, J.A., Shiee, N., Reich, D.S., Prince, J.L., Pham, D.L., 2011. Direct segmentation of the major white matter tracts in diffusion tensor images. NeuroImage, 58(2), 458-68.

  8. Harrison, D.M., Caffo, B.S., Shiee, N., Farrell, J.A.D., Bazin, P.-L., Farrell, S.K., Ratchford, J.N., Calabresi, P.A., Reich, D.S.,2011. Longitudinal changes in diffusion-tensor-based quantitative MRI in multiple sclerosis. Neurology, 76(2), 179-86.

  9. Ozturk, A., Smith, S.A., Gordon-Lipkin, E.M, Harrison, D.M., Shiee, N., Pham, D.L., Caffo, B.S., Calabresi, P.A., Reich, D.S., 2010. MRI of the corpus callosum in multiple sclerosis: Association with disability. Multiple Sclerosis, 16 (2), 166-77.

  10. Shiee, N., Bazin, P.-L., Ozturk, A., Calabresi, P.A, Reich, D.S., Pham, D.L, 2010. A topology-preserving approach to the segmentation of brain images with multiple sclerosis. NeuroImage, 49 (2), 1524-35.


Conference Publications

  1. Shiee, N., Bazin, P.-L., Cuzzocreo, J.L., Blitz, A., Pham, D.L., 2011. Segmentation of brain images  using adaptive atlases with application to ventriculomegaly. Proceedings of the 22nd International Conference on Information Processing in Medical Imaging, pp. 1-12. Irsee, Germany.

  2. Shiee, N., Bazin, P.-L., Reich, D.S., Pham, D.L., 2011. Fiber tractogrophy and tract segmentation in multiple sclerosis lesions. Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1488-91. Chicago, USA.

  3. Roy, S., Carass, S., Shiee, N., Pham D.L., Prince, J.L., 2010. MR contrast synthesis for lesion segmentation. Proceedings of the 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 932-35. Rotterdam, The Netherlands

  4. Shiee, N., Bazin, P.-L., Reich, D.S., Pham, D.L, 2009. Automated reconstruction of the cerebral cortex in multiple sclerosis patients. Proceedings of the 6th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1334-37. Boston, USA.

  5. Shiee, N., Bazin, P.-L., Pham, D.L, 2008. Multiple sclerosis lesion segmentation using statistical and topological atlases. Midas Journal, IJ – 2008 MICCAI Workshop on 3D Segmentation in the Clinic: A Grand Challenge. New York, USA.

  6. Shiee, N., Bazin, P.-L., Cuzzocreo, J.L., Reich, D.S., Calabresi, P.A, Pham, D.L, 2008 Topologically constrained segmentation of brain images with multiple sclerosis lesions. Proceedings of MICCAI workshop on Medical Image Analysis on Multiple Sclerosis, pp. 71-81. New York, USA.

Abstracts

  1. Stankiewicz, A.M., Ratchford, J.N., Saidha, S., Shiee, N., Syc, S., Bazin, P.-L., Reich, D.S., Calabresi, P.A., 2011. Anterior and posterior visual pathway degeneration correlate in MS. The Consortium of Multiple Sclerosis Centers. Amsterdam, The Netherlands.

  2. Syc, S., Ratchford, J.N., Shiee, N., Seigo, M., Stankiewicz, A.M., Ford, A., Durbin, M., Oakley, J., Meyer, S., Pham, D.L., Frohamn, E., Reich, D.S., Calabresi, P.A., Saidha, S., 2011. Cortical gray matter atrophy correlates with retinal neuronal but not retinal axonal loss in multiple sclerosis. 27th Congress of the European Committee for Treatment and Research in Multiple Sclerosis. Amsterdam, The Netherlands.

  3. Shea, C.D., Shiee. N., Pham D.L., Reich D.S., 2011. Automated MS lesion segmentation and longitudinal tracking via subtraction imaging. 27th Congress of the European Committee for Treatment and Research in Multiple Sclerosis. Amsterdam, The Netherlands.

  4. George, I.C., Shea C.D., Shiee N., Gaitán M.I., Evangelou I.E., Reich D.S., 2011. Quantitative MRI at the time of and leading up to MS lesion appearance. 27th Congress of the European Committee for Treatment and Research in Multiple Sclerosis. Amsterdam, The Netherlands.

  5. Ratchford, J.N., Seigo, M., Farrell, S., Shiee, N., Eckstein, C., Saidha, S., Newsome, S., Syc, S., Stankiewicz, A., Bazin, P.-L., Pham, D.L., Reich, D.S., Calabresi, P.A., 2011. Retinal nerve fiber layer thickness is associated with rate of brain atrophy. 27th Congress of the European Committee for Treatment and Research in Multiple Sclerosis. Amsterdam, The Netherlands.

  6. Shiee, N., Bazin, P.-L., Calabresi, P.A., Reich, D.S., Pham, D.L., 2011. Distribution of WM MS lesions in fiber tracts. 17th Annual Meeting of the Organization for Human Brain Mapping. Quebec City, Canada.

  7. Shiee, N., Cuzzocreo, J.L., Kishore, B., Walling, C., Bazin, P.-L., Prince, J.L, Pham, D.L., 2011. Validation tools for cortical reconstruction algorithms. 17th Annual Meeting of the Organization for Human Brain Mapping. Quebec City, Canada.

  8. Saidha, S., Eckstein, C., Syc, C., Warnel, C., Farrell, S., Shiee, N., et al., 2010. Primary retinal pathology in multiple sclerosis as detected by optical coherence tomography. 26th Congress of the European Committee for Treatment and Research in Multiple Sclerosis. Gothenburg, Sweden.

  9. Shiee, N., Bazin, P.-L, Calabresi, P.A., Pham, D.L., Reich, D.S., 2010. Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation. 16th Annual Meeting of the Organization for Human Brain Mapping. Barcelona, Spain.

  10. Shiee, N., Bazin, P.-L, Bogovic, J., Chen, M., Calabresi, P.A., Reich, D.S., et al., 2010. Cortical thinning in Multiple Sclerosis. 16th Annual Meeting of the Organization for Human Brain Mapping. Barcelona, Spain.

  11. Ratchford, J.N., Farrell, S., Shiee, N., Pham, D.L., Reich, D.S., Warner, C., et al., 2010. Retinal nerve fiber layer thickness correlates with gray and white matter volumes in MS. 62nd Annual Meeting of the American Academy of Neurology. Toronto, Canada.

  12. Harrison, D., Shiee, N., Bazin, P.-L., Farrell, S., Ratchford, J.N., Caffo, B.S., et al, 2010. Whole brain and tract-specific diffusion tensor and magnetization transfer imaging values correlate with quantified brain atrophy. 62nd Annual Meeting of the American Academy of Neurology. Toronto, Canada.

  13. Roy, S., Carass, A., Shiee, N., Pham, D.L., Resnick, S., Prince, J.L., 2010. Longitudinal changes of white matter lesions. 18th Annual meeting of the International Society for Magnetic Resonance in Medicine. Stockholm, Sweden.

  14. Shiee, N., Bazin, P.-L., Reich, D.S., Pham, D.L, 2009. An automated pipeline for cortical reconstruction of brains with MS. 15th Annual Meeting of the Organization for Human Brain Mapping. San Francisco, USA.