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(New page: <meta name="title" content="Validation Data for Cortical Reconstruction Algorithms"/> {{h2|Validation Data for Cortical Reconstruction Algorithms}} This validation data set contains volume...) |
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| − | <meta name="title" content="Validation Data for Cortical Reconstruction Algorithms"/> | + | <!-- <meta name="title" content="Validation Data for Cortical Reconstruction Algorithms"/> --> |
| + | __NOTOC__ | ||
{{h2|Validation Data for Cortical Reconstruction Algorithms}} | {{h2|Validation Data for Cortical Reconstruction Algorithms}} | ||
| − | This validation data set contains volumetric T1 and FLAIR MR images of five healthy volunteers and five MS subjects. It also includes manually picked landmark points in seven different regions of the cortex on both inner and outer surfaces. The MS | + | This validation data set contains volumetric T1 and FLAIR MR images of five healthy volunteers and five MS subjects. It also includes manually picked landmark points in seven different regions of the cortex on both inner and outer surfaces. The MS subjects have additional landmarks, picked in the vicinity of white matter lesions. |
| + | |||
| + | |||
| + | {{h3|Data Information}} | ||
| + | {| align="center" style="width:100%; border:2px #c2cec0 solid; background:#efde5ea; text-align:left;" | ||
| + | |- | ||
| + | | colspan="1" | | ||
| + | | colspan="1" align="center" style="background:#c2cec0; text-align:center;" | '''Modality''' | ||
| + | | colspan="1" align="center" style="background:#c2cec0; text-align:center;" | ''' Resolution ''' | ||
| + | |- | ||
| + | | rowspan="2" valign="center" | '''Healthy Volunteers (HV)''' | ||
| + | | '''T1 (MPRAGE)''' | ||
| + | | 1.0 x 1.0 x 1.0 millimeters | ||
| + | |- | ||
| + | | '''FLAIR''' | ||
| + | | 1.0 x 1.0 x 1.0 millimeters | ||
| + | |- | ||
| + | | colspan="3" style="border-top:1px solid #929e90;"| | ||
| + | |- | ||
| + | | rowspan="2" valign="center" | '''Multiple Sclerosis (MS)''' | ||
| + | | '''T1 (MPRAGE)''' | ||
| + | | 0.83 x 0.83 x 0.83 millimeters | ||
| + | |- | ||
| + | | '''FLAIR''' | ||
| + | | 0.83 x 0.83 x 0.83 millimeters | ||
| + | |- | ||
| + | |} | ||
| + | |||
| + | |||
| + | {{h3|Data Layout}} | ||
| + | <pre> | ||
| + | JHU_cortical_validation_data-v1.2 | ||
| + | | | ||
| + | |- landamrks | ||
| + | | | | ||
| + | | |- Rater_A | ||
| + | | | | | ||
| + | | | |- JHU_cortical_landmarks_HV1_RaterA_LCALC_GC.xml | ||
| + | . . . . | ||
| + | . . . . | ||
| + | | | \- JHU_cortical_landmarks_MS5_RaterA_RSYL_GW.xml | ||
| + | | | | ||
| + | | |- Rater_B | ||
| + | | | | | ||
| + | | | |- JHU_cortical_landmarks_HV1_RaterB_LCALC_GC.xml | ||
| + | . . . . | ||
| + | . . . . | ||
| + | | | \- JHU_cortical_landmarks_MS5_RaterB_RSYL_GW.xml | ||
| + | | | | ||
| + | | \- Rater_C | ||
| + | | | | ||
| + | | |- JHU_cortical_landmarks_MS1_RaterC_lesion_GC.xml | ||
| + | . . . | ||
| + | . . . | ||
| + | | \- JHU_cortical_landmarks_MS5_RaterC_lesion_GW.xml | ||
| + | | | ||
| + | \- volumetric_images | ||
| + | | | ||
| + | |- JHU_cortical_validation_HV1_FLAIR.nii | ||
| + | |- JHU_cortical_validation_HV1_T1.nii | ||
| + | . . | ||
| + | . . | ||
| + | |- JHU_cortical_validation_HV5_FLAIR.nii | ||
| + | |- JHU_cortical_validation_HV5_T1.nii | ||
| + | |- JHU_cortical_validation_MS1_FLAIR.nii | ||
| + | |- JHU_cortical_validation_MS1_T1.nii | ||
| + | . . | ||
| + | . . | ||
| + | |- JHU_cortical_validation_MS5_FLAIR.nii | ||
| + | \- JHU_cortical_validation_MS5_T1.nii | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | {{h3|Data Download}} | ||
| + | Download the {{iacl|~aaron/data/JHU_cortical_validation_data-v1.2.zip|Version 1.2 data}}. Any work that uses this data should cite: {{iacl-pub|author=N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham|title=Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation|jrnl=hbm|number=35(7):3385-3401|when=2014|doi=10.1002/hbm.22409}} | ||
Latest revision as of 00:50, 3 July 2022
Validation Data for Cortical Reconstruction Algorithms
This validation data set contains volumetric T1 and FLAIR MR images of five healthy volunteers and five MS subjects. It also includes manually picked landmark points in seven different regions of the cortex on both inner and outer surfaces. The MS subjects have additional landmarks, picked in the vicinity of white matter lesions.
Data Information
| Modality | Resolution | |
| Healthy Volunteers (HV) | T1 (MPRAGE) | 1.0 x 1.0 x 1.0 millimeters |
| FLAIR | 1.0 x 1.0 x 1.0 millimeters | |
| Multiple Sclerosis (MS) | T1 (MPRAGE) | 0.83 x 0.83 x 0.83 millimeters |
| FLAIR | 0.83 x 0.83 x 0.83 millimeters | |
Data Layout
JHU_cortical_validation_data-v1.2
|
|- landamrks
| |
| |- Rater_A
| | |
| | |- JHU_cortical_landmarks_HV1_RaterA_LCALC_GC.xml
. . . .
. . . .
| | \- JHU_cortical_landmarks_MS5_RaterA_RSYL_GW.xml
| |
| |- Rater_B
| | |
| | |- JHU_cortical_landmarks_HV1_RaterB_LCALC_GC.xml
. . . .
. . . .
| | \- JHU_cortical_landmarks_MS5_RaterB_RSYL_GW.xml
| |
| \- Rater_C
| |
| |- JHU_cortical_landmarks_MS1_RaterC_lesion_GC.xml
. . .
. . .
| \- JHU_cortical_landmarks_MS5_RaterC_lesion_GW.xml
|
\- volumetric_images
|
|- JHU_cortical_validation_HV1_FLAIR.nii
|- JHU_cortical_validation_HV1_T1.nii
. .
. .
|- JHU_cortical_validation_HV5_FLAIR.nii
|- JHU_cortical_validation_HV5_T1.nii
|- JHU_cortical_validation_MS1_FLAIR.nii
|- JHU_cortical_validation_MS1_T1.nii
. .
. .
|- JHU_cortical_validation_MS5_FLAIR.nii
\- JHU_cortical_validation_MS5_T1.nii
Data Download
Download the Version 1.2 data. Any work that uses this data should cite:
- N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation", Human Brain Mapping, 35(7):3385-3401, 2014. (doi)
