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15 Most Recent IACL papers on PubMed

Xiaofeng Liu, Fangxu Xing, Maureen Stone, Jiachen Zhuo, Timothy Reese, Jerry L Prince, Georges El Fakhri, Jonghye Woo
Generative Self-training for Cross-domain Unsupervised Tagged-to-Cine MRI Synthesis.
Med Image Comput Comput Assist Interv: 2021, 12903;138-148
[PubMed:34734217] [DOI]

Xiaofeng Liu, Fangxu Xing, Jerry L Prince, Aaron Carass, Maureen Stone, Georges El Fakhri, Jonghye Woo
DUAL-CYCLE CONSTRAINED BIJECTIVE VAE-GAN FOR TAGGED-TO-CINE MAGNETIC RESONANCE IMAGE SYNTHESIS.
Proc IEEE Int Symp Biomed Imaging: 2021, 2021;
[PubMed:34707796] [DOI]

Mallika Singh, Eleanor Pahl, Shangxian Wang, Aaron Carass, Junghoon Lee, Jerry L Prince
Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network.
Proc SPIE Int Soc Opt Eng: 2021, 11596;
[PubMed:34548736] [DOI]

Lianrui Zuo, Blake E Dewey, Yihao Liu, Yufan He, Scott D Newsome, Ellen M Mowry, Susan M Resnick, Jerry L Prince, Aaron Carass
Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory.
Neuroimage: 2021, 243;118569
[PubMed:34506916] [DOI]

Yufan He, Aaron Carass, Lianrui Zuo, Blake E Dewey, Jerry L Prince
Autoencoder based self-supervised test-time adaptation for medical image analysis.
Med Image Anal: 2021, 72;102136
[PubMed:34246070] [DOI]

Philip V Bayly, Ahmed Alshareef, Andrew K Knutsen, Kshitiz Upadhyay, Ruth J Okamoto, Aaron Carass, John A Butman, Dzung L Pham, Jerry L Prince, K T Ramesh, Curtis L Johnson
MR Imaging of Human Brain Mechanics In Vivo: New Measurements to Facilitate the Development of Computational Models of Brain Injury.
Ann Biomed Eng: 2021, 49(10);2677-2692
[PubMed:34212235] [DOI]

Jonghye Woo, Fangxu Xing, Jerry L Prince, Maureen Stone, Arnold D Gomez, Timothy G Reese, Van J Wedeen, Georges El Fakhri
A deep joint sparse non-negative matrix factorization framework for identifying the common and subject-specific functional units of tongue motion during speech.
Med Image Anal: 2021, 72;102131
[PubMed:34174748] [DOI]

Arnold D Gomez, Philip V Bayly, John A Butman, Dzung L Pham, Jerry L Prince, Andrew K Knutsen
##Title##
J R Soc Interface: 2021, 18(179);20210251
[PubMed:34157896] [DOI]

Angeliki G Filippatou, Eleni S Vasileiou, Yufan He, Kathryn C Fitzgerald, Grigorios Kalaitzidis, Jeffrey Lambe, Maureen A Mealy, Michael Levy, Yihao Liu, Jerry L Prince, Ellen M Mowry, Shiv Saidha, Peter A Calabresi, Elias S Sotirchos
Optic Neuritis-Independent Retinal Atrophy in Neuromyelitis Optica Spectrum Disorder.
J Neuroophthalmol: 2021;
[PubMed:34108402] [DOI]

Fangxu Xing, Maureen Stone, Jerry L Prince, Xiaofeng Liu, Georges El Fakhri, Jonghye Woo
Floor-of-the-Mouth Muscle Function Analysis Using Dynamic Magnetic Resonance Imaging.
Proc SPIE Int Soc Opt Eng: 2021, 11596;
[PubMed:34012189] [DOI]

Andrew K Knutsen, Arnold D Gomez, Mihika Gangolli, Wen-Tung Wang, Deva Chan, Yuan-Chiao Lu, Eftychios Christoforou, Jerry L Prince, Philip V Bayly, John A Butman, Dzung L Pham
In vivo estimates of axonal stretch and 3D brain deformation during mild head impact.
Brain Multiphys: 2020, 1;
[PubMed:33870238] [DOI]

Jeffrey Lambe, Hunter Risher, Angeliki G Filippatou, Olwen C Murphy, Elias S Sotirchos, Henrik Ehrhardt, Esther Ogbuokiri, Nicole Pellegrini, Brandon Toliver, Nicholas J Luciano, Simidele Davis, Nicholas Fioravante, Ohemaa Kwakyi, Jerry L Prince, Peter A Calabresi, Kathryn C Fitzgerald, Shiv Saidha
Modulation of Retinal Atrophy With Rituximab in Multiple Sclerosis.
Neurology: 2021, 96(20);e2525-e2533
[PubMed:33827962] [DOI]

Jiachen Zhuo, Li Jiang, Chandler Sours Rhodes, Steven Roys, Karthikamanthan Shanmuganathan, Hegang Chen, Jerry L Prince, Neeraj Badjatia, Rao P Gullapalli
Early Stage Longitudinal Subcortical Volumetric Changes following Mild Traumatic Brain Injury.
Brain Inj: 2021, 35(6);725-733
[PubMed:33822686] [DOI]

Xiao Liang, Pan Su, Sunil G Patil, Nahla M H Elsaid, Steven Roys, Maureen Stone, Rao P Gullapalli, Jerry L Prince, Jiachen Zhuo
Prospective motion detection and re-acquisition in diffusion MRI using a phase image-based method-Application to brain and tongue imaging.
Magn Reson Med: 2021, 86(2);725-737
[PubMed:33665929] [DOI]

Jeffrey Lambe, Kathryn C Fitzgerald, Olwen C Murphy, Angeliki G Filippatou, Elias S Sotirchos, Grigorios Kalaitzidis, Elena Vasileiou, Nicole Pellegrini, Esther Ogbuokiri, Brandon Toliver, Nicholas J Luciano, Simidele Davis, Nicholas Fioravante, Ohemaa Kwakyi, Hunter Risher, Ciprian M Crainiceanu, Jerry L Prince, Scott D Newsome, Ellen M Mowry, Shiv Saidha, Peter A Calabresi
Association of Spectral-Domain OCT With Long-term Disability Worsening in Multiple Sclerosis.
Neurology: 2021, 96(16);e2058-e2069
[PubMed:33653904] [DOI]


Also see our complete Publications list



Recent News Items


2021

October

  • Brain Biomechanics Imaging Resources now has 30 datasets available for download.
    • 10 subjects from the Henry Jackson Foundation, imaged with tagged magnetic resonance.
    • 10 subjects from the University of Delaware, imaged with high resolution magnetic resonance elastography at multiple frequencies (30Hz, 50Hz, 70Hz).
    • 10 subjects from Washington University in St. Louis, imaged with magnetic resonance elastography at multiple frequencies (20Hz, 30Hz, 50Hz, 70Hz, 90Hz).
    • All data includes structural magnetic resonance images (T1-w, T2-w) and diffusion weighted images.
    • The structural images have been processed with SLANT-MACRUISE. The diffusion images with TORTOISE.
    • Individual subjects can be downloaded or complete site sets.
    • Site information and subject details can be found in the available BBIR documents.
    • Additional information is available in some of related publications:
      • "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Brain Models"  (doi)
      • "MR imaging of human brain mechanics in vivo: new measurements to facilitate the development of computational models of brain injury"  (doi)


  • Ahmed Alshareef's paper titled "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Brain Models" appears in Brain Multiphysics.  (doi)
  • Ahmed Alshareef presented "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Finite Element Brain Models" at the Biomedical Engineering Society (BMES) Annual Meeting, Orlando, FL, October 6-9, 2021. Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Finite Element Brain Models
  • Jerry L. Prince delivered a keynote at the DALI MICCAI Workshop. Jerry L. Prince delivers the keynote at DALI MICCAI Workshop


September

  • Samuel W. Remedios presented "Joint Image and Label Self-Super-Resolution" at the Simulation and Synthesis in Medical Imaging (SASHIMI 2021) in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021), Strasbourg, France, September 27 – October 1, 2021.  (doi) Joint Image and Label Self-Super-Resolution
  • Jacob C. Reinhold presented "A Structural Causal Model for MR Images of Multiple Sclerosis" at the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021), Strasbourg, France, September 27 – October 1, 2021.  (doi) A Structural Causal Model for MR Images of Multiple Sclerosis
  • Lianrui Zuo's paper titled "Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory" appears in NeuroImage.  (doi)


August

  • Yufan He successfully defends his thesis titled "Retinal OCT Image Analysis Using Deep Learning". Retinal OCT Image Analysis Using Deep Learning


July

  • A paper on our Brain Biomechanics project titled "MR imaging of human brain mechanics in vivo: new measurements to facilitate the development of computational models of brain injury" appears in Annals of Biomedical Engineering.  (doi)


June

  • Yufan He's paper titled "Autoencoder Based Self-Supervised Test-Time Adaptation for Medical Image Analysis" appears in Medical Image Analysis.  (doi)
  • Congratulations to Lianrui Zuo on winning the Best Poster Award at the 27th Conference on Information Processing in Medical Imaging (IPMI 2021), Virtually in Bornholm, Denmark, June 28 - July 2, 2021.
  • IACL papers at the 27th Conference on Information Processing in Medical Imaging (IPMI 2021), Virtually in Bornholm, Denmark, June 28 - July 2, 2021.
    • Lianrui Zuo presents his poster teaser for "Information-based Disentangled Representation Learning for Unsupervised MR Harmonization". Information-based Disentangled Representation Learning for Unsupervised MR Harmonization
    • Shuo Han presents his poster teaser for "MR Slice Profile Estimation by Learning to Match Internal Patch Distributions". MR Slice Profile Estimation by Learning to Match Internal Patch Distributions


April

  • IACL papers at the 18th IEEE International Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021.
    • Shuo Han presented "Slice profile estimation from 2D MRI acquisition using generative adversarial networks". Slice profile estimation from 2D MRI acquisition using generative adversarial networks
    • Our collaborator, Xiaofeng Liu at Massachusetts General Hospital, presented "Dual-Cycle constrained bijective VAE-GAN for Tagged-to-Cine magnetic resonance image synthesis".


March

  • Can Zhao's paper titled "SMORE: A Self-supervised Anti-aliasing and Super-resolution Algorithm for MRI Using Deep Learning" appears in IEEE Trans. on Medical Imaging.  (doi)


February

  • IACL members papers from the Proceedings of SPIE Medical Imaging (SPIE-MI 2021), San Diego, CA, February 14–18, 2021.
    • ShangXian Wang presented "Thalamus Segmentation Using Convolutional Neural Network".  (doi) Thalamus Segmentation Using Convolutional Neural Network
    • Mallika Singh presented "Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network".  (doi) Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network
    • Di Liu presented "Label super resolution for 3D Magnetic Resonance Images using Deformable U-net".  (doi) Label super resolution for 3D Magnetic Resonance Images using Deformable U-net
    • Muhan Shao presented "Reconstruction and refinement of crossing muscle fibers in the human tongue".  (doi) Deep network reconstruction of tongue crossing muscle fibers
    • Muhan Shao presented "Dynamic palatogram generation from Cine MRI for normalized speech assessment".  (doi) Dynamic palatogram generation from Cine MRI for normalized speech assessment


January

  • Jerry L. Prince presented the Medical Imaging keynote at NeurIPS "New Approaches for Magnetic Resonance Image Harmonization", the video is now on YouTube New Approaches for Magnetic Resonance Image Harmonization.




2020

December

  • Yufan He's paper titled "Structured layer surface segmentation for retina OCT using fully convolutional regression networks" appears in the MICCAI Special Issue of Medical Image Analysis.  (doi).


October

  • IACL members present papers at the 23rd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2020), Lima, Peru, October 4 - 8, 2020.
    • Yufan He presented "Self domain adapted network".  (doi) Self domain adapted network
    • Blake Dewey presented "A Disentangled Latent Space for Cross-Site MRI Harmonization".  (doi) A Disentangled Latent Space for Cross-Site MRI Harmonization
  • IACL members had the following presentations at MICCAI 2020 Workshops:
    • Lianrui Zuo presented "Synthesize Realistic MR Images with Noise Control" at SASHIMI 2020.  (doi) Synthesize Realistic MR Images with Noise Control
    • Shuo Han presented "Inhomogeneity Correction in Magnetic Resonance Images Using Deep Image Priors" at MLMI 2020.  (doi) Inhomogeneity Correction in Magnetic Resonance Images Using Deep Image Priors
    • Muhan Shao presented "Direct reconstruction of crossing muscle fibers in the human tongue using a deep neural network" at CDMRI 2020.


August

  • From our collaboration with Xi’an Jiaotong University, the paper "Unsupervised MR-to-CT Synthesis using Structure-Constrained CycleGAN" appears in IEEE Trans. on Medical Imaging.  (doi)


July

  • Shuo Han's paper "Longitudinal analysis of regional cerebellum volumes during normal aging" appears in NeuroImage.  (doi)  (PubMed)


June

  • Brain Biomechanics Imaging Resources releases more data.
    • Data is from University of Delaware and Washington University in St. Louis.
    • Includes five new subjects (Two from University of Delaware and three from Washington University in St. Louis).
    • The data is magnetic resonance elastography at multiple frequencies (20Hz through 90Hz).
  • Christian Barillot passed away on June 14, he was a well known and liked researcher in the Medical Imaging Community. There is a memorial page for him at IRISA.


May

  • The paper "Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis" appears in the journal Nature Scientific Reports.  (doi)  (PubMed)
  • Shuo Han's paper "Automatic Cerebellum Anatomical Parcellation using U-Net with Locally Constrained Optimization" appears in NeuroImage.  (doi)





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