Difference between revisions of "Cortical data/"

From IACL
Jump to navigation Jump to search
(Added 'Data Layout".)
 
(10 intermediate revisions by 2 users not shown)
Line 1: Line 1:
−
<meta name="title" content="Validation Data for Cortical Reconstruction Algorithms"/>
+
<!-- <meta name="title" content="Validation Data for Cortical Reconstruction Algorithms"/> -->
 +
__NOTOC__
 
{{h2|Validation Data for Cortical Reconstruction Algorithms}}
 
{{h2|Validation Data for Cortical Reconstruction Algorithms}}
−
This validation data set contains volumetric T1 and FLAIR MR images of five healthy volunteers and five MS subjects. It also includes manually picked landmark points in seven different regions of the cortex on both inner and outer surfaces. The MS subjects have additional landmarks, picked in the vacinity of white matter lesions. The dataset can be downloaded from [http://iacl.ece.jhu.edu/~nshiee/cortical_data/JHU_cortical_validation_data-v1.0.zip here (427MB)].
+
This validation data set contains volumetric T1 and FLAIR MR images of five healthy volunteers and five MS subjects. It also includes manually picked landmark points in seven different regions of the cortex on both inner and outer surfaces. The MS subjects have additional landmarks, picked in the vicinity of white matter lesions.
 +
 
 +
 
 +
{{h3|Data Information}}
 +
{| align="center" style="width:100%; border:2px #c2cec0 solid; background:#efde5ea; text-align:left;"
 +
|-
 +
| colspan="1" |
 +
| colspan="1" align="center" style="background:#c2cec0; text-align:center;" | '''Modality'''
 +
| colspan="1" align="center" style="background:#c2cec0; text-align:center;" | '''&nbsp;Resolution&nbsp;'''
 +
|-
 +
| rowspan="2" valign="center" | '''Healthy Volunteers (HV)'''
 +
| '''T1 (MPRAGE)'''
 +
| 1.0 x 1.0 x 1.0 millimeters
 +
|-
 +
| '''FLAIR'''
 +
| 1.0 x 1.0 x 1.0 millimeters
 +
|-
 +
| colspan="3" style="border-top:1px solid #929e90;"|
 +
|-
 +
| rowspan="2" valign="center" | '''Multiple Sclerosis (MS)'''
 +
| '''T1 (MPRAGE)'''
 +
| 0.83 x 0.83 x 0.83 millimeters
 +
|-
 +
| '''FLAIR'''
 +
| 0.83 x 0.83 x 0.83 millimeters
 +
|-
 +
|}
  
  
 
{{h3|Data Layout}}
 
{{h3|Data Layout}}
 
<pre>
 
<pre>
−
JHU_cortical_validation_data-v1.0
+
JHU_cortical_validation_data-v1.2
 
  |
 
  |
 
  |- landamrks
 
  |- landamrks
Line 46: Line 73:
 
     \- JHU_cortical_validation_MS5_T1.nii
 
     \- JHU_cortical_validation_MS5_T1.nii
 
</pre>
 
</pre>
 +
 +
 +
{{h3|Data Download}}
 +
Download the {{iacl|~aaron/data/JHU_cortical_validation_data-v1.2.zip|Version 1.2 data}}. Any work that uses this data should cite: {{iacl-pub|author=N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham|title=Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation|jrnl=hbm|number=35(7):3385-3401|when=2014|doi=10.1002/hbm.22409}}

Latest revision as of 00:50, 3 July 2022


Validation Data for Cortical Reconstruction Algorithms

This validation data set contains volumetric T1 and FLAIR MR images of five healthy volunteers and five MS subjects. It also includes manually picked landmark points in seven different regions of the cortex on both inner and outer surfaces. The MS subjects have additional landmarks, picked in the vicinity of white matter lesions.


Data Information

Modality  Resolution 
Healthy Volunteers (HV) T1 (MPRAGE) 1.0 x 1.0 x 1.0 millimeters
FLAIR 1.0 x 1.0 x 1.0 millimeters
Multiple Sclerosis (MS) T1 (MPRAGE) 0.83 x 0.83 x 0.83 millimeters
FLAIR 0.83 x 0.83 x 0.83 millimeters


Data Layout

JHU_cortical_validation_data-v1.2
 |
 |- landamrks
 |   |
 |   |- Rater_A
 |   |   |
 |   |   |- JHU_cortical_landmarks_HV1_RaterA_LCALC_GC.xml
 .   .   .                   .
 .   .   .                   .
 |   |   \- JHU_cortical_landmarks_MS5_RaterA_RSYL_GW.xml
 |   |
 |   |- Rater_B
 |   |   |
 |   |   |- JHU_cortical_landmarks_HV1_RaterB_LCALC_GC.xml
 .   .   .                   .
 .   .   .                   .
 |   |   \- JHU_cortical_landmarks_MS5_RaterB_RSYL_GW.xml
 |   |
 |   \- Rater_C
 |       |
 |       |- JHU_cortical_landmarks_MS1_RaterC_lesion_GC.xml
 .       .                   .
 .       .                   .
 |       \- JHU_cortical_landmarks_MS5_RaterC_lesion_GW.xml
 |
 \- volumetric_images
     |
     |- JHU_cortical_validation_HV1_FLAIR.nii
     |- JHU_cortical_validation_HV1_T1.nii
     .               .
     .               .
     |- JHU_cortical_validation_HV5_FLAIR.nii
     |- JHU_cortical_validation_HV5_T1.nii
     |- JHU_cortical_validation_MS1_FLAIR.nii
     |- JHU_cortical_validation_MS1_T1.nii
     .               .
     .               .
     |- JHU_cortical_validation_MS5_FLAIR.nii
     \- JHU_cortical_validation_MS5_T1.nii


Data Download

Download the Version 1.2 data. Any work that uses this data should cite:

  • N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation", Human Brain Mapping, 35(7):3385-3401, 2014. (doi)
Retrieved from "https://iacl.ece.jhu.edu/index.php?title=Cortical_data/&oldid=17804"