Difference between revisions of "Publications/Brain Mapping"

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#REDIRECT [[Publications]]
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{{h3|Brain Mapping}}
 
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{{h4|2013}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Patch Based Intensity Normalization of Brain MR Images|conf=isbi2013}}
 
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{{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince|title=Longitudinal Intensity Normalization in the presence of Multiple Sclerosis Lesions|conf=isbi2013}}
 
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{{iacl-pub|author=A. Jog, S. Roy, A. Carass, and J.L. Prince|title=Magnetic Resonance Image Synthesis through Patch Regression|conf=isbi2013}}
 
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{{iacl-pub|author=Z. Yang, A. Carass, and J.L. Prince|title=Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex|conf=isbi2013}}
 
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{{iacl-pub|author=M. Bilgel, S. Roy, A. Carass, P.A. Nyquist, and J.L. Prince|title=Automated Anatomical Labeling of the Cerebral Arteries using Belief Propagation|conf=spie2013}}
 
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{{iacl-pub|author=M. Chen, A. Carass, D.S. Reich, P.A. Calabresi, D.L. Pham, and J.L. Prince|title=Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis|conf=spie2013}}
 
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{{iacl-pub|author=A. Jog, S. Roy, A. Carass, and J.L. Prince|title=Pulse Sequence based Multi-acquisition MR Intensity Normalization|conf=spie2013}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches|conf=spie2013}}
 
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{{iacl-pub|author=C. Ye, J.A. Bogovic, S.H. Ying, and Jerry L. Prince|title=Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model|conf=spie2013}}
 
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{{iacl-pub|author=J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying|title=Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters|jrnl=ni|number=64(1):616-629|when=2013|doi=10.1016/j.neuroimage.2012.08.075}}
 
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{{h4|2012}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=System for Integrated Neuroimaging Analysis and Processing of Structure|journal=Neuroinformatics|number=''In Press''|when=2012|doi=10.1007/s12021-012-9159-9|pubmed=22932976|pmcid=}}
 
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{{iacl-pub|author=P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross|title=Brain metabolite alterations and cognitive dysfunction in early Huntington's disease|journal=Movement Disorders|number=27(7):895-902|when=June 2012|doi=10.1002/mds.25010|pubmed=22649062}}
 
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{{iacl-pub|author=S. Roy, A. Carass,  P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Consistent Segmentation using a Rician Classifier|jrnl=mia|number=16(2):524-535|when=2012|doi=doi:10.1016/j.media.2011.12.001|pubmed=22204754}}
 
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{{iacl-pub|author=Z. Yang, A. Carass, and J.L. Prince|title=Automatic Sulcal Curve Extraction with MRF Based Shape Prior|conf=isbi2012}}
 
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{{iacl-pub|author=C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying|title=Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images|conf=isbi2012}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince|title=Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI|jrnl=ni|number=59(3):2175–2186|when=2012|doi=10.1016/j.neuroimage.2011.10.011}}
 
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{{iacl-pub|author=Z. Yang, A. Carass, C. Chen, and J.L. Prince|title=Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction|conf=spie2012|doi=10.1117/12.910552}}
 
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{{iacl-pub|author=X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince|title=Topology Preserving Brain Tissue Segmentation Using Graph Cuts|conf=mmbia2012|doi=10.1109/MMBIA.2012.6164754}}
 
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{{h4|2011}}
 
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{{iacl-pub|author=B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee and A.W. Toga, J.L. Prince, and S.H. Ying|title=MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2|journal=The Cerebellum|number=1-8|when=2011|doi=10.1007/s12311-011-0308-8|pubmed=21850525}}
 
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{{iacl-pub|author=P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham|title=Direct segmentation of the major white matter tracts in diffusion tensor images|jrnl=ni|number=58(2):458-468|when=September 2011|doi=doi:10.1016/j.neuroimage.2011.06.020|pubmed=21718790}}
 
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{{iacl-pub|author=A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis|jrnl=ni|when=June 2011|number=56(4):1982-1992|doi=10.1016/j.neuroimage.2011.03.045|pubmed=21458576|pmcid=3105165}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham|title=Segmentation of brain images  using adaptive atlases with application to ventriculomegaly|conf=ipmi2011|pubmed=21761641}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=A Compressed Sensing Approach For MR Tissue Contrast Synthesis|conf=ipmi2011|pubmed=21761671}}
 
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{{iacl-pub|author=H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori|title=A framework on surface-based connectivity quantification for the human brain|journal=Journal of Neuroscience Methods|when=April 2011|number=197(2):324-332|doi=doi:10.1016/j.jneumeth.2011.02.017|pubmed=21396960|pmcid=3081907}}
 
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{{iacl-pub|author=A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince|title=Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation|conf=hbm2011}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, D.L. Pham|title=Fiber tractography and tract segmentation in multiple sclerosis lesions|conf=isbi2011|doi=10.1109/ISBI.2011.5872682}}
 
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{{iacl-pub|author=M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince|title=Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images|conf=isbi2011|doi=10.1109/ISBI.2011.5872741}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Compressed Sensing Based Intensity Non-Uniformity Correction|conf=isbi2011|doi=10.1109/ISBI.2011.5872364}}
 
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{{iacl-pub|author=M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince|title=Distance Transforms in Multi Channel MR Image Registration|conf=spie2011|doi=10.1117/12.878367}}
 
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{{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince|title=Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches|conf=spie2011|doi=10.1117/12.877466}}
 
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{{iacl-pub|author=F.E.A. ElShahaby, B.A. Landman, and J.L. Prince |title=Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing|conf=spie2011|doi=10.1117/12.878382|pubmed=21552469|pmcid=3087384}}
 
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{{iacl-pub|author=B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl|title=Multi-parametric neuroimaging reproducibility: A 3-T resource study|jrnl=ni|number=54(4):2854–2866|when=2011|doi=10.1016/j.neuroimage.2010.11.047|pubmed=21094686|pmcid=3020263}}
 
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{{h4|2010}}
 
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{{iacl-pub|author=A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying|title=Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration|journal=Journal of Neurology|number=257(8):1406-1408|when=August 2010|doi=10.1007/s00415-010-5523-6|pubmed=20354716|pmcid=2963035}}
 
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{{iacl-pub|author=B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham|title=JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis|pub=NCI's NCRI|loc=Washington D.C.|when=June 21-22, 2010}}
 
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{{iacl-pub|author=M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince and S.M. Resnick|title=Longitudinal changes in cortical thickness associated with normal aging|jrnl=ni|number=52(4):1215-1223|when=October 2010|pubmed=20441796|doi=doi:10.1016/j.neuroimage.2010.04.258|pmcid=2910226}}
 
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{{iacl-pub|author=K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman|title=Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities|pub=Annual ORNL Biomedical Science and Engineering Conference ([http://www.ornl.gov/bsec_conferences/2010/ BSEC 2010])|when=May 25-26, 2010|loc=Oak Ridge, Tennessee|doi=10.1109/BSEC.2010.5510850|pubmed=21151892|pmcid=2998761}}
 
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{{iacl-pub|author=N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham|title=Cortical thinning in Multiple Sclerosis|conf=hbm2010}}
 
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{{iacl-pub|author=N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich|title=Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation|conf=hbm2010}}
 
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{{iacl-pub|author=J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying|title=Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation|conf=hbm2010}}
 
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{{iacl-pub|author=M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince|title=Multi-Channel Enhancement of the Adaptive Bases Algorithm|conf=hbm2010}}
 
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{{iacl-pub|author=M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince|title=Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit|conf=hbm2010}}
 
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{{iacl-pub|author=C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince|title=A Protocol for Manual Correction of Gyral Based Cortical Labels|conf=hbm2010}}
 
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{{iacl-pub|author=C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince|title=A Java Application for Manually Editing Cortical Labels|conf=hbm2010}}
 
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{{iacl-pub|author=J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein|title=Graph-Theoretical Methods for Statistical Inference on MR Connectome Data|conf=hbm2010}}
 
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{{iacl-pub|author=J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman |title=Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways|conf=ismrm2010}}
 
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{{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince|title=Longitudinal Changes of White Matter Lesions|conf=ismrm2010}}
 
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{{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince|title=MR Contrast Synthesis for Lesion Segmentation|conf=isbi2010|doi=10.1109/ISBI.2010.5490140|pubmed=21132059|pmcid=2995277}}
 
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{{iacl-pub|author=A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich|title=MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability|jrnl=ms|number=16(2):166-77|when=2010|pubmed=20142309|doi=10.1177/1352458509353649|pmcid=2820126}}
 
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{{iacl-pub|author=J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi|title=Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS|conf=aan2010}}
 
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{{iacl-pub|author=B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman|title=The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software|journal=Neuroinformatics|number=8:5-17|when=March 2010|pubmed=20077162|doi=10.1007/s12021-009-9061-2|pmcid=2860951}}
 
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{{iacl-pub|author=J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Statistical Recombination of Rater Labels on Surfaces|conf=spie2010|doi=10.1117/12.844214|pubmed=21152374|pmcid=2997739}}
 
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{{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Synthesizing MR contrast and resolution through a patch matching technique|conf=spie2010|doi=10.1117/12.844575|pubmed=20431709|pmcid=2860803}}
 
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{{iacl-pub|author=X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince|title=A novel contrast for DTI visualization for thalamus delineation|conf=spie2010|doi=10.1117/12.844473}}
 
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{{iacl-pub|author=B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince|title=Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI|conf=spie2010|doi=10.1117/12.844171|pubmed=20396591|pmcid=2854412}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham|title=A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions|jrnl=ni|number=49(2):1524-1535|when=January 2010|pubmed=19766196|doi=10.1016/j.neuroimage.2009.09.005|pmcid=2806481}}
 
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{{h4|2009}}
 
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{{iacl-pub|author=S.H. Ying, B.A. Landman, S. Chowdhury, A.H. Sinofsky, A. Gambini, S. Mori, D.S. Zee, and J.L. Prince|title=Orthogonal diffusion-weighted MRI measures distinguish region-specific degeneration in cerebellar ataxia subtypes|journal=J. Neurol.|number=256(11):1939-1942|when=November 2009|doi=10.1007/s00415-009-5269-1|pubmed=19653028|pmcid=2789274}}
 
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{{iacl-pub|author=P.-L. Bazin, J.A. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham|title=Belief Propagation Based Segmentation of White Matter Tracts in DTI|conf=miccai2009|number=pp. 943-950|doi=10.1007/978-3-642-04268-3|pubmed=20426079}}
 
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{{iacl-pub|author= B.A. Landman, P.-L. Bazin, S.A. Smith, and J.L. Prince|title=Robust Estimation of Spatially Variable Noise Fields |jrnl=mrm|when=62(2):500-509, August 2009|doi=10.1002/mrm.22013|pubmed=19526510|pmcid=2806192}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging|jrnl=jmri|number=27(6):741-751|when=July 2009|doi=doi:10.1016/j.mri.2009.01.001|pubmed=19250784|pmcid=2733233}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, D.S. Reich, and D.L. Pham|title=Automated Cortical Reconstruction of Brains with Multiple Sclerosis|conf=isbi2009|doi=10.1109/ISBI.2009.5193311}}
 
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{{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince|title=A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images|conf=isbi2009|doi=10.1109/ISBI.2009.5193070|pubmed=20126426|pmcid=2814436}}
 
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{{iacl-pub|author=B.A. Landman, J.C. Hoyt, E.J. Sax, and K.P. Smith|title=NeuroWeb Database: A Laboratory Management System for Neuroimaging Coordination, Collaboration and Analysis|conf=hbm2009|doi=10.1016/S1053-8119(09)70586-5}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, and D.L. Pham|title=An Automated Pipeline for Cortical Reconstruction of Brains with MS|conf=hbm2009|doi=10.1016/S1053-8119(09)70836-5}}
 
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{{iacl-pub|author=J. Bogovic, R. Nicoletto, B. Landman, J.L. Prince, and S. Ying|title=Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes|conf=hbm2009|doi=10.1016/S1053-8119(09)71895-6}}
 
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{{iacl-pub|author=B.A. Landman, B.C. Lucas, J.A. Bogovic, A. Carass, and J.L. Prince|title=A Rapid Prototyping Environment for NeuroImaging in Java|conf=hbm2009|doi=10.1016/S1053-8119(09)70239-3}}
 
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{{iacl-pub|author=J. Wan, A. Carass, P.-L. Bazin, S.H. Ying, and J.L. Prince|title=Automated Cerebellum Extraction From Whole Head 3D MR Images|conf=hbm2009|doi=10.1016/S1053-8119(09)71592-7}}
 
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{{iacl-pub|author=M.E. Richardson, D. Crocetti, J. Wan, D.L. Pham, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky|title=Automated MRI Parcellation of the Frontal Lobe|conf=hbm2009|doi=doi:10.1016/S1053-8119(09)70451-3}}
 
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{{iacl-pub|author=B.A. Landman|title=CATNAP and JIST: DTI Processing Made Ridiculously Simple|conf=ismrm2009}}
 
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{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L Prince|title=Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets|conf=ismrm2009}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, and P.C.M. van Zijl|title=Optimal An Open Source Monte Carlo Framework for Simulating Diffusion in Biologically Relevant Geometries including Broken, Crimped and Bulging Axons|conf=ismrm2009}}
 
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{{h4|2008}}
 
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{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces|jrnl=tmi|number=27(12):1739-1753|when=December 2008|doi=10.1109/TMI.2008.925080|pubmed=19033090|pmcid=2597639}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, D.S. Reich, P.A. Calabresi, and D.L. Pham |title=Multiple Sclerosis Lesion Segmentation Using Statistical and Topological Atlases|conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince |title=Tensor Interpolation by Concise Local Estimation of Anisotropy and Rotation |conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L. Prince |title=Compressed Sensing of Multiple Intra-Voxel Orientations with Traditional DTI |conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, J. Farrell, H. Huang, J.L. Prince, and S. Mori|title= Diffusion Tensor Imaging at Low SNR:Non-monotonic behaviors of tensor contrasts|jrnl=mri|number=26(6):790-800|when=July 2008|doi=10.1016/j.mri.2008.01.034|pubmed=18499378|pmcid=2583784}}
 
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{{iacl-pub|author=A. Ozturk, A.D. Sasson, J.A.D. Farrell, B.A. Landman, A.C.B.S. da Motta, A. Aralasmak, and D.M. Yousem |title= Regional Differences in Diffusion Tensor Imaging Measurements: Assessment of Intra-Rater and Inter-Rater Variability|pub=American Journal of Neuroradiology|number=29:1124-1127|when=June 2008}}
 
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{{iacl-pub|author=B. Lucas, B. Landman, J.L. Prince, and D. Pham|title=MAPS: A Free Medical Image Processing Pipeline|conf=hbm2008}}
 
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{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Characterizing Regional Gray Matter Thickness Trends in Normal Aging|conf=hbm2008}}
 
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{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity|conf=hbm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince.|title= Robust Maximum Likelihood Estimation in Q-space MRI|conf=isbi2008|doi=10.1109/ISBI.2008.4541134}}
 
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{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Automated Reliable Labeling of the Cortical Surface|conf=isbi2008|doi=10.1109/ISBI.2008.4541027}}
 
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{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=Automatically identifying white matter tracts using cortical labels|conf=isbi2008|doi=10.1109/ISBI.2008.4541141|pubmed=20119500|pmcid=2812932}}
 
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{{iacl-pub|author=S. Roy, H. Agarwal, A. Carass, Y. Bai, D.L. Pham, and J.L. Prince|title=Fuzzy C-Means with Variable Compactness|conf=isbi2008|doi=10.1109/ISBI.2008.4541030|pubmed=20126427|pmcid=2814437}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust DTI Noise Level Estimation Improves RESTORE Tensor Estimation|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.C.M. van Zijl, and J.L. Prince|title=Q-Space Diffusion Weighted MRI Analyzed with Maximizing Rician Likelihood Improves Reliability and Tissue Contrast|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince|title=Exploring the Information Content of q-Space Diffusion Weighted Imaging: Application to Multiple Sclerosis (MS) Spinal Cord Lesions|conf=ismrm2008}}
 
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−
{{h4|2007}}
 
−
{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince.|title=Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=mmbia2007}}
 
−
{{iacl-pub|author=J.A. Farrell, B.A. Landman, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of SNR on the Accuracy and Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T |jrnl=jmri|number=26(3):756-767|when=August 2007|pubmed=17729339}}
 
−
{{iacl-pub|author=B.A. Landman, J.A. Farrell, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T|jrnl=ni|number=36(4):1123-1138|when=July 2007}}
 
−
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, N-L. Patel, S. Mori, and J.L. Prince|title=DTI Fiber Tracking: The Importance of Adjusting DTI Gradient Tables for Motion Correction. CATNAP – A Tool to Simplify and Accelerate DTI Analysis|conf=hbm2007}}
 
−
{{iacl-pub|author=B.A. Landman, A.X. Du, W.D. Mayes, J.L. Prince, and S.H. Ying|title=Diffusion Tensor Imaging Enables Robust Mapping of the Deep Cerebellar Nuclei|conf=hbm2007}}
 
−
{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=Tradeoffs Between Tensor Orientation and Anisotropy in DTI: Impact of Diffusion Weighting Scheme|conf=ismrm2007}}
 
−
{{iacl-pub|author=B.A. Landman, H. Huang, J.L. Prince, and S.H. Ying|title=A Window for High-Resolution Post-Mortem DTI: Mapping Contrast Changes in Neural Degeneration|conf=ismrm2007}}
 
−
{{iacl-pub|author=B.A. Landman, S. Mori, and J.L. Prince|title=Systematic Evaluation of Linear and Nonlinear DTI Estimation Methods: An Open Framework|conf=ismrm2007}}
 
−
{{iacl-pub|author=A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett, and J.L. Prince|title=A Joint Registration and Segmentation Approach to Skull Stripping|conf=isbi2007|doi=10.1109/ISBI.2007.356937}}
 
−
{{iacl-pub|author=P. Aksit, J.A. Derbyshire, and J.L. Prince|title=Three-point method for fast and robust field mapping for EPI geometric distortion correction|conf=isbi2007|doi=10.1109/ISBI.2007.356808}}
 
−
 
 
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{{h4|2006}}
 
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{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Octree-based Topology-preserving Isosurface Simplification|conf=mmbia2006}}
 
−
{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, A.S.K. Liu, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=Delineation of Cerebellar Fiber Tracts on Anatomically Aligned Planes with ViPAR, a Novel MRI Visualization and Manipulation Tool|conf=hbm2006}}
 
−
{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=s-Image Representation of Diffusion Tensor Contrast and Fiber Geometry: Leukometric Analysis in the Brainstem and Cerebellum|conf=hbm2006}}
 
−
{{iacl-pub|author=H. Huang, A. Carass, J.L. Prince, B. Landman, P.C.M. van Zijl, and S. Mori|title=Cortico-cortical Connectivity Revealed by DTI-based Tractography|conf=ismrm2006}}
 
−
{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=On the Coregistration of Diffusion Weighted Images|conf=ismrm2006}}
 
−
{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S. Mori, P.C.M. van Zijl, and J.L. Prince|title=Optimal Partitioning of Diffusion Weighting Schemes|conf=ismrm2006}}
 
−
{{iacl-pub|author=P. Anbazhagan, A. Carass, P.-L. Bazin, and J.L. Prince|title=Automatic Estimation of Mid Sagittal Plane and AC-PC alignment based on Nonrigid Registration|conf=isbi2006|doi=10.1109/ISBI.2006.1625046}}
 
−
 
 
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{{h4|2005}}
 
−
{{iacl-pub|author=Y. Bai, X. Han, D. Pham, and J.L. Prince|title=Super-resolved multi-channel fuzzy segmentation of MR brain images|conf=spie2005}}
 
−
 
 
−
 
 
−
{{h4|2004}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, D.Q. Naiman, S.M. Resnick, M.A. Kraut, and J.L. Prince|title=Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study|conf=miccai2004}}
 
−
{{iacl-pub|author=X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J.L. Prince|title=CRUISE: Cortical Reconstruction Using Implicit Surface Evolution|jrnl=ni|number=23(3):997-1012|when=2004|doi=10.1016/j.neuroimage.2004.06.043}}
 
−
{{iacl-pub|author=D. Pham and J.L. Prince|title=Robust Unsupervised Tissue Classification in MR Images|conf=isbi2004|doi=10.1109/ISBI.2004.1398486}}
 
−
{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=An Automated Method for Finding Curves of Sulcal Fundi on the Human Cortical Surface|conf=isbi2004|doi=10.1109/ISBI.2004.1398777}}
 
−
{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Super-resolution Reconstruction of MR Brain Images|conf=ciss2004}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Han, X. Tao, C. Xu, S.M. Resnick, D. Pham, and J.L. Prince|title=Cortical Surface Segmentation and Mapping|jrnl=ni|number=23:S108-S118|when=2004|doi=10.1016/j.neuroimage.2004.07.042|pubmed=15501080}}
 
−
{{iacl-pub|author=D. Tosun and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|jrnl=mia|number=8:295-309|when=2004|doi=10.1016/j.media.2004.06.020}}
 
−
 
 
−
 
 
−
{{h4|2003}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|conf=miccai2003}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A topology preserving level set method for geometric deformable models|jrnl=pami|number=25(6):755-768|when=June 2003|doi=10.1109/TPAMI.2003.1201824}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=Topology-Preserving Geometric Deformable Models and Brain Reconstruction|pub=Geometric Level Set Methods in Imaging, Vision, and Graphics|loc=Edited by Stanley Osher and Nikos Paragios, Springer-Verlag|when=2003|doi=10.1007/0-387-21810-6_22}}
 
−
{{iacl-pub|author=K.J. Behnke, M.E. Rettmann, D.L. Pham, D. Shen, S.M. Resnick, C. Davatzikos, and J.L. Prince|title=Automatic classification of sulcal regions of the human brain cortex using pattern recognition|conf=spie2003|pnumber=p153|doi=10.1117/12.480834}}
 
−
 
 
−
 
 
−
{{h4|2002}}
 
−
{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain|jrnl=tmi|when=21(5):513-524, May 2002|doi=10.1109/TMI.2002.1009387|pubmed=12071622}}
 
−
{{iacl-pub|author=X. Han, C. Xu, U. Braga-Neto, and J.L. Prince|title=Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm|jrnl=tmi|when=21(2):109-121, February 2002|doi=10.1109/42.993130|pubmed=11929099}}
 
−
{{iacl-pub|author=M.E. Rettmann, X. Tao, and J.L. Prince|title=Assisted labeling techniques for the human brain cortex|conf=spie2002|pnumber=p148|doi=10.1117/12.467134}}
 
−
{{iacl-pub|author=D.L. Pham, X. Han, M.E. Rettmann, C. Xu, D. Tosun, S.M. Resnick, and J.L. Prince|title=New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm|conf=spie2002|pnumber=p147|doi=10.1117/12.467145}}
 
−
 
 
−
 
 
−
{{h4|2001}}
 
−
{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A Topology Preserving Deformable Model Using Level Sets|conf=cvpr2001|number=2:765-770|loc=Kauai, Hawai|when=8-14 December 2001|pnumber=p131|doi=10.1109/CVPR.2001.991042}}
 
−
{{iacl-pub|author=X. Han, C. Xu, D. Tosun, and J.L. Prince|title=Cortical Surface Reconstruction Using a Topology Preserving Geometric Deformable Model|conf=mmbia2001|doi=10.1109/MMBIA.2001.991736}}
 
−
{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Automated Parcellation of the Cortical Surface for Computation of Regional Gyrification Indices|conf=hbm2001}}
 
−
{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Tao, X. Han, C. Xu, and J.L. Prince|title=Calculation of Human Cerebral Cortical Thickness on Opposing Sulcal Banks|conf=hbm2001}}
 
−
{{iacl-pub|author=X. Tao, X. Han, M.E. Rettmann, J.L. Prince, and C. Davatzikos|title=Statistical Study on Cortical Sulci of Human Brains|conf=ipmi2001}}
 
−
{{iacl-pub|author=X. Han, C. Xu, M.E. Rettmann, and J.L. Prince|title=Automatic Segmentation Editing for Cortical Surface Reconstruction|conf=spie2001}}
 
−
{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Hemispherical Map for the Human Brain Cortex|conf=spie2001}}
 
−
 
 
−
 
 
−
{{h4|2000}}
 
−
{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Watersheds on the Cortical Surface for Automated Sulcal Segmentation|conf=mmbia2000|number=pp. 20-27|doi=10.1109/MMBIA.2000.852356}}
 
−
{{iacl-pub|author=M.E. Rettmann, X. Han, D.L. Pham, and J.L. Prince,|title=Geodesics for Sulcal Segmentation and Depth Measurements|conf=hbm2000}}
 
−
{{iacl-pub|author=D. Yu, C. Xu, and J.L. Prince|title=A New Surface Editing Tool for Generating Truth Models of the Human Cortical Surface|conf=hbm2000}}
 
−
{{iacl-pub|author=C. Xu, X. Han, and J.L. Prince|title=Improving Cortical Surface Reconstruction Accuracy Using an Anatomically Consistent Gray Matter Representation|conf=hbm2000}}
 
−
{{iacl-pub|author=X. Han, M.E. Rettmann, C. Xu, and J.L. Prince|title=Morphology on Triangle Meshes Using Geodesic Distance|conf=ciss2000}}
 
−
{{iacl-pub|author=D.N. Yu, C. Xu, M.E. Rettmann, D.L. Pham, and J.L. Prince|title=Quantitative Validation of a Deformable Cortical Surface Model|conf=spie2000|doi=10.1117/12.387673}}
 
−
{{iacl-pub|author=D. Yu|title=Quantitative Validation of a Cortical Surface Reconstruction Method|pub=MSE thesis, The Johns Hopkins University|when=January, 2000}}
 
−
 
 
−
 
 
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{{h4|1999}}
 
−
{{iacl-pub|author=M.E. Rettmann, C. Xu, D.L. Pham, and J.L. Prince|title=Automated Segmentation of Sulcal Regions|conf=miccai1999}}
 
−
{{iacl-pub|author=C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince|title=Reconstruction of the Human Cerebral Cortex from Magnetic Resonance Images|jrnl=tmi|when=18(6):467-480, June 1999|doi=10.1109/42.781013|pubmed=10463126}}
 
−
{{iacl-pub|author=M.E. Etemad, C. Xu, D.L. Pham, D. Yu, and J.L. Prince|title=On Automated Segmentation of Buried Gyri|conf=hbm1999}}
 
−
 
 
−
 
 
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{{h4|1998}}
 
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{{iacl-pub|author=C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince|title=Reconstruction of the Central Layer of the Human Cerebral Cortex from MR images|conf=miccai1998}}
 
−
{{iacl-pub|author=C. Xu, M.E. Etemad, D. Yu, D.L. Pham, and J.L. Prince|title=A Spherical Map for Cortical Geometry|conf=hbm1998}}
 
−
{{iacl-pub|author=A.F. Goldszal, C. Davatzikos, D.L. Pham, M.X.H. Yan, R.N. Bryan, and S.M. Resnick|title=An Image Processing System for Qualitative and Quantitative Volumetric Analysis of Brain Images|pub=Journal of Computer Assisted Tomography|when=22(5):827-837, 1998}}
 
−
 
 
−
 
 
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{{h4|1997}}
 
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{{iacl-pub|author=D.L. Pham, J.L. Prince, A.P. Dagher, and C. Xu|title=An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging|pub=International Journal of Pattern Recognition and Artificial Intelligence|loc=11(8):1189-1211|when=1997|doi=10.1142/S021800149700055X}}
 
−
{{iacl-pub|author=C. Xu, D.L. Pham, and J.L. Prince|title=Finding the Brain Cortex Using Fuzzy Segmentation, Isosurfaces, and Deformable Surface Models|conf=ipmi1997}}
 
−
 
 
−
 
 
−
{{h4|1996}}
 
−
{{iacl-pub|author=D.L. Pham, J.L. Prince, and A.P. Dagher|title=Estimation of Joint Probability Density Functions in Magnetic Resonance Imaging|pub=Proceedings of The Ninth Workshop on Image and Multidimensional Signal Processing (IMDSP)|number=pp. 148-149|when=1996}}
 
−
{{iacl-pub|author=C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan|title=Morphological analysis of brain structures using spatial normalization|pub=Proc. Visualization in Biomedical Computing|loc=Hamburg, Germany|when=September 22-25, 1996}}
 
−
{{iacl-pub|author=C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan|title=A Computerized Approach for Morphological Analysis of the Corpus Callosum|pub=Journal of Computer Assisted Tomography|number=20(1):88-97|when=January, 1996}}
 
−
 
 
−
 
 
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{{h4|1995}}
 
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{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=An Active Contour Model for Mapping the Cortex|jrnl=tmi|number=14(1):65-80|when=March 1995|doi=10.1109/42.370403}}
 
−
 
 
−
 
 
−
{{h4|1994}}
 
−
{{iacl-pub|author=C.A. Davatzikos and J.L. Prince|title=Brain Image Registration Based on Curve Mapping|pub=Proceedings of the IEEE Workshop on Biomedical Image Analysis|number=pp. 245-254|when=June 24-25, 1994|loc=Seattle, WA|doi=10.1109/BIA.1994.315847}}
 
−
 
 
−
 
 
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{{h4|1993}}
 
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{{iacl-pub|author=C.A. Davatzikos, J.L. Prince, and R.N. Bryan|title=Brain Image Registration Based on Cortical Contour Mapping|pub=Proceedings of the IEEE 1993 Nuclear Science Symposium and Medical Imaging Conference|number=pp. 1823-1826|loc=San Francisco, CA|when=October 31 - November 6, 1993}}
 
−
 
 
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{{h4|1992}}
 
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{{iacl-pub|author=H.W. Muller-Gartner, J.M. Links, J.L. Prince, R.N.  Bryan, E.R. McVeigh, J.P. Leal, C. Davatzikos, and J.J. Frost|title=Measurement of Tracer Concentration in Brain Gray Matter Using Positron Emission Tomography: MRI-Based Correction for Partial Volume Effects|pub=J. Cerebral Blood Flow and Metabolism|loc=12(4):571-583|when=1992|pubmed=1618936}}
 

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