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| − | <meta name="title" content="Brain Mapping Publications"/>
| + | #REDIRECT [[Publications]] |
| − | __NOTOC__
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| − | {{pubs nav|pageTitle=Brain Mapping}}
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| − | {{h4|2014}}
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| − | {{iacl-pub|author=N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham|title=Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation|jrnl=hbm|number=In Press|when=2014|doi=10.1002/hbm.22409}}
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| − | {{iacl-pub|author=A. Jog, A. Carass, D.L. Pham, and J.L. Prince|title=Random Forest FLAIR reconstruction from T1, T2, and PD-weighted MRI|conf=isbi2014}}
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| − | {{iacl-pub|author=S. Roy, Q. He, A. Jog, A. Carass, J.L. Prince, and D.L. Pham|title=Example based lesion segmentation|conf=spie2014|doi=10.1117/12.2043917}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, A. Jog, J.L. Prince, and J. Lee,|title=MR to CT registration of brains using image synthesis|conf=spie2014|doi=10.1117/12.2043954}}
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| − | {{iacl-pub|author=M.E. Ranta, M. Chen, D. Crocetti, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky|title=Automated MRI parcellation of the frontal lobe|jrnl=hbm|number=In Press|when=2014|doi=10.1002/hbm.22309}}
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| − | {{h4|2013}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=[[Magnetic Resonance Image Example Based Contrast Synthesis|Magnetic Resonance Image Example Based Contrast Synthesis]]|jrnl=tmi|number=32(12):2348-2363|when=2013|doi=10.1109/TMI.2013.2282126}}
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| − | {{iacl-pub|author=M. Chen, A. Carass, J. Oh, G. Nair, D.L. Pham, D.S. Reich, and J.L. Prince|title=[[Automatic magnetic resonance spinal cord segmentation|Automatic Magnetic Resonance Spinal Cord Segmentation with Topology Constraints for Variable Fields of View]]|jrnl=ni|number=83:1051-1062|when=2013|doi=10.1016/j.neuroimage.2013.07.060}}
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| − | {{iacl-pub|author=A. Jog, S. Roy, J.L. Prince, and A. Carass|title=[http://hdl.handle.net/10380/3441 MR Brain Segmentation using Decision Trees]|when=MICCAI Grand Challenge on MR Brain Image Segmentation ([http://mrbrains13.isi.uu.nl/ MRBrainS13]), Nagoya, Japan, September 26, 2013.}}
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| − | {{iacl-pub|author=S. Roy, A. Jog, A. Carass, and J.L. Prince|title=Atlas Based Intensity Transformation of Brain MR Images|when=MICCAI Third International Workshop on Multimodal Brain Image Analysis (MBIA 2013)|doi=10.1007/978-3-319-02126-3_6}}
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| − | {{iacl-pub|author=Z. Yang, J.A. Bogovic, C. Ye, A. Carass, S.H. Ying, and J.L. Prince|title=Automated Cerebellar Lobule Segmentation using Graph Cuts|when=MICCAI Challenge Workshop on Segmentation: Algorithms, Theory and Applications (SATA 2013), Nagoya, Japan, September 26, 2013}}
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| − | {{iacl-pub|author=A.K. Knutsen, E. Magrath, J. McEntee, J.L. Prince, P. Bayly, J. Butman, and D.L. Pham|title=Improved measurement of Brain Deformation during a Mild Acceleration using Tagged MRI|journal=Journal of Neurotrauma|number=30(15):A114-A115|when=August 2013}}
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| − | {{iacl-pub|author=J.A. Bogovic, P.L. Bazin, S.H. Ying, and J.L. Prince|title=Automated Segmentation of the Cerebellar Lobules using Boundary Specific Classification and Evolution|conf=ipmi2013|doi=10.1007/978-3-642-38868-2_6}}
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| − | {{iacl-pub|author=J. Stough, C. Ye, S.H. Ying, and J.L. Prince|title=Thalamic Parcellation from Multi-Modal Data using Random Forest Learning|conf=isbi2013}}
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| − | {{iacl-pub|author=C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince|title=Segmentation of the Complete Superior Cerebellar Peduncles using a Multi-object Geometric Deformable Model|conf=isbi2013}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Patch Based Intensity Normalization of Brain MR Images|conf=isbi2013}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince|title=Longitudinal Intensity Normalization in the presence of Multiple Sclerosis Lesions|conf=isbi2013}}
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| − | {{iacl-pub|author=A. Jog, S. Roy, A. Carass, and J.L. Prince|title=Magnetic Resonance Image Synthesis through Patch Regression|conf=isbi2013}}
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| − | {{iacl-pub|author=Z. Yang, A. Carass, and J.L. Prince|title=Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex|conf=isbi2013}}
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| − | {{iacl-pub|author=M. Bilgel, S. Roy, A. Carass, P.A. Nyquist, and J.L. Prince|title=Automated Anatomical Labeling of the Cerebral Arteries using Belief Propagation|conf=spie2013|doi=10.1117/12.2006460}}
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| − | {{iacl-pub|author=M. Chen, A. Carass, D.S. Reich, P.A. Calabresi, D.L. Pham, and J.L. Prince|title=Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis|conf=spie2013|doi=10.1117/12.2007150}}
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| − | {{iacl-pub|author=A. Jog, S. Roy, A. Carass, and J.L. Prince|title=Pulse Sequence based Multi-acquisition MR Intensity Normalization|conf=spie2013|doi=10.1117/12.2007062}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches|conf=spie2013|doi=10.1117/12.2006682}}
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| − | {{iacl-pub|author=C. Ye, J.A. Bogovic, S.H. Ying, and Jerry L. Prince|title=Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model|conf=spie2013|doi=10.1117/12.2006119}}
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| − | {{iacl-pub|author=J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying|title=Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters|jrnl=ni|number=64(1):616-629|when=2013|doi=10.1016/j.neuroimage.2012.08.075|pubmed=22975160}}
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| − | {{h4|2012}}
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| − | {{iacl-pub|author=B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=System for Integrated Neuroimaging Analysis and Processing of Structure|journal=Neuroinformatics|number=11(1):91-103|when=2012|doi=10.1007/s12021-012-9159-9|pubmed=22932976|pmcid=}}
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| − | {{iacl-pub|author=P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross|title=Brain metabolite alterations and cognitive dysfunction in early Huntington's disease|journal=Movement Disorders|number=27(7):895-902|when=June 2012|doi=10.1002/mds.25010|pubmed=22649062}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Consistent Segmentation using a Rician Classifier|jrnl=mia|number=16(2):524-535|when=2012|doi=doi:10.1016/j.media.2011.12.001|pubmed=22204754}}
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| − | {{iacl-pub|author=Z. Yang, A. Carass, and J.L. Prince|title=Automatic Sulcal Curve Extraction with MRF Based Shape Prior|conf=isbi2012|doi=10.1109/ISBI.2012.6235573}}
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| − | {{iacl-pub|author=C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying|title=Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images|conf=isbi2012|doi=10.1109/ISBI.2012.6235758}}
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| − | {{iacl-pub|author=B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince|title=Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI|jrnl=ni|number=59(3):2175–2186|when=2012|doi=10.1016/j.neuroimage.2011.10.011}}
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| − | {{iacl-pub|author=Z. Yang, A. Carass, C. Chen, and J.L. Prince|title=Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction|conf=spie2012|doi=10.1117/12.910552}}
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| − | {{iacl-pub|author=X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince|title=Topology Preserving Brain Tissue Segmentation Using Graph Cuts|conf=mmbia2012|doi=10.1109/MMBIA.2012.6164754}}
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| − | {{h4|2011}}
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| − | {{iacl-pub|author=B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee and A.W. Toga, J.L. Prince, and S.H. Ying|title=MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2|journal=The Cerebellum|number=1-8|when=2011|doi=10.1007/s12311-011-0308-8|pubmed=21850525}}
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| − | {{iacl-pub|author=P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham|title=Direct segmentation of the major white matter tracts in diffusion tensor images|jrnl=ni|number=58(2):458-468|when=September 2011|doi=doi:10.1016/j.neuroimage.2011.06.020|pubmed=21718790}}
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| − | {{iacl-pub|author=A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis|jrnl=ni|when=June 2011|number=56(4):1982-1992|doi=10.1016/j.neuroimage.2011.03.045|pubmed=21458576|pmcid=3105165}}
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| − | {{iacl-pub|author=N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham|title=Segmentation of brain images using adaptive atlases with application to ventriculomegaly|conf=ipmi2011|doi=10.1007/978-3-642-22092-0_1|pubmed=21761641|pmcid=3478153}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=A Compressed Sensing Approach For MR Tissue Contrast Synthesis|conf=ipmi2011|doi=10.1007/978-3-642-22092-0_31|pubmed=21761671|pmcid=3398746}}
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| − | {{iacl-pub|author=H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori|title=A framework on surface-based connectivity quantification for the human brain|journal=Journal of Neuroscience Methods|when=April 2011|number=197(2):324-332|doi=doi:10.1016/j.jneumeth.2011.02.017|pubmed=21396960|pmcid=3081907}}
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| − | {{iacl-pub|author=A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince|title=Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation|conf=hbm2011}}
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| − | {{iacl-pub|author=N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, D.L. Pham|title=Fiber tractography and tract segmentation in multiple sclerosis lesions|conf=isbi2011|doi=10.1109/ISBI.2011.5872682}}
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| − | {{iacl-pub|author=M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince|title=Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images|conf=isbi2011|doi=10.1109/ISBI.2011.5872741}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Compressed Sensing Based Intensity Non-Uniformity Correction|conf=isbi2011|doi=10.1109/ISBI.2011.5872364}}
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| − | {{iacl-pub|author=M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince|title=Distance Transforms in Multi Channel MR Image Registration|conf=spie2011|doi=10.1117/12.878367}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince|title=Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches|conf=spie2011|doi=10.1117/12.877466}}
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| − | {{iacl-pub|author=F.E.A. ElShahaby, B.A. Landman, and J.L. Prince |title=Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing|conf=spie2011|doi=10.1117/12.878382|pubmed=21552469|pmcid=3087384}}
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| − | {{iacl-pub|author=B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl|title=Multi-parametric neuroimaging reproducibility: A 3-T resource study|jrnl=ni|number=54(4):2854–2866|when=2011|doi=10.1016/j.neuroimage.2010.11.047|pubmed=21094686|pmcid=3020263}}
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| − | {{h4|2010}}
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| − | {{iacl-pub|author=A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying|title=Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration|journal=Journal of Neurology|number=257(8):1406-1408|when=August 2010|doi=10.1007/s00415-010-5523-6|pubmed=20354716|pmcid=2963035}}
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| − | {{iacl-pub|author=B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham|title=JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis|pub=NCI's NCRI|loc=Washington D.C.|when=June 21-22, 2010}}
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| − | {{iacl-pub|author=M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince and S.M. Resnick|title=Longitudinal changes in cortical thickness associated with normal aging|jrnl=ni|number=52(4):1215-1223|when=October 2010|pubmed=20441796|doi=doi:10.1016/j.neuroimage.2010.04.258|pmcid=2910226}}
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| − | {{iacl-pub|author=K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman|title=Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities|pub=Annual ORNL Biomedical Science and Engineering Conference ([http://www.ornl.gov/bsec_conferences/2010/ BSEC 2010])|when=May 25-26, 2010|loc=Oak Ridge, Tennessee|doi=10.1109/BSEC.2010.5510850|pubmed=21151892|pmcid=2998761}}
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| − | {{iacl-pub|author=N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham|title=Cortical thinning in Multiple Sclerosis|conf=hbm2010}}
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| − | {{iacl-pub|author=N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich|title=Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation|conf=hbm2010}}
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| − | {{iacl-pub|author=J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying|title=Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation|conf=hbm2010}}
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| − | {{iacl-pub|author=M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince|title=Multi-Channel Enhancement of the Adaptive Bases Algorithm|conf=hbm2010}}
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| − | {{iacl-pub|author=M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince|title=Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit|conf=hbm2010}}
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| − | {{iacl-pub|author=C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince|title=A Protocol for Manual Correction of Gyral Based Cortical Labels|conf=hbm2010}}
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| − | {{iacl-pub|author=C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince|title=A Java Application for Manually Editing Cortical Labels|conf=hbm2010}}
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| − | {{iacl-pub|author=J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein|title=Graph-Theoretical Methods for Statistical Inference on MR Connectome Data|conf=hbm2010}}
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| − | {{iacl-pub|author=J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman |title=Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways|conf=ismrm2010}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince|title=Longitudinal Changes of White Matter Lesions|conf=ismrm2010}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince|title=MR Contrast Synthesis for Lesion Segmentation|conf=isbi2010|doi=10.1109/ISBI.2010.5490140|pubmed=21132059|pmcid=2995277}}
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| − | {{iacl-pub|author=A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich|title=MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability|jrnl=ms|number=16(2):166-77|when=2010|pubmed=20142309|doi=10.1177/1352458509353649|pmcid=2820126}}
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| − | {{iacl-pub|author=J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi|title=Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS|conf=aan2010}}
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| − | {{iacl-pub|author=B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman|title=The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software|journal=Neuroinformatics|number=8:5-17|when=March 2010|pubmed=20077162|doi=10.1007/s12021-009-9061-2|pmcid=2860951}}
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| − | {{iacl-pub|author=J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Statistical Recombination of Rater Labels on Surfaces|conf=spie2010|doi=10.1117/12.844214|pubmed=21152374|pmcid=2997739}}
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| − | {{iacl-pub|author=S. Roy, A. Carass, and J.L. Prince|title=Synthesizing MR contrast and resolution through a patch matching technique|conf=spie2010|doi=10.1117/12.844575|pubmed=20431709|pmcid=2860803}}
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| − | {{iacl-pub|author=X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince|title=A novel contrast for DTI visualization for thalamus delineation|conf=spie2010|doi=10.1117/12.844473}}
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| − | {{iacl-pub|author=B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince|title=Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI|conf=spie2010|doi=10.1117/12.844171|pubmed=20396591|pmcid=2854412}}
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| − | {{iacl-pub|author=N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham|title=A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions|jrnl=ni|number=49(2):1524-1535|when=January 2010|pubmed=19766196|doi=10.1016/j.neuroimage.2009.09.005|pmcid=2806481}}
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