JohnCV

<meta name="BogovicCV" content="Bogovic CV"/>

Education

Bachelor of Science (Magna Cum Laude) - Washington University in St Louis, Saint Louis MO, May 2006

Master of Science in Engineering – Johns Hopkins University, Baltimore MD, January 2008

Awards and Honors

• Student Travel Award, International Society for Magnetic Resonance in Medicine (2010)
• David Levy Award for Design Excellence, 2006
• Eta Kappa Nu Honor Society- 2006
• Tau Beta Pi Honor Society - 2005
• Antoinette Frances Dames Award, 2004

Grants and Fellowships

• Howard and Jacqueline Chertkof Endowed Fellowship for Engineering Graduate Students, Johns Hopkins, 2006

Journal Publications

1. B.C Lucas, J.A. Bogovic, A. Carass, P-L Bazin, J.L. Prince, D.L. Pham, B.A. Landman "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software." Neuroinformatics, In press, 2010.

Conference Publications

1. J.A. Bogovic, P.L. Bazin, J.L. Prince. “Topology-preserving STAPLE” Proceedings of Mathematical Methods in Biomedical Image Analysis (MMBIA 2010), San Francisco, CA, June 13-18, 2010.
2. J.A. Bogovic, B.A. Landman, P.L. Bazin, J.L. Prince. “Statistical Recombination of Rater Labels on Surfaces” Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 13-18, 2010.
3. B.A. Landman, J.A. Bogovic, J.L. Prince. "Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data" Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 13-18, 2010.
4. B.A. Landman, H. Wan, J.A. Bogovic, P-L Bazin, J.L. Prince. "Resolution of Crossing Fibers with Constrained Compressed Sensing using Traditional Diffusion Tensor MRI" Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 13-18, 2010.
5. P-L Bazin, J. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham, "Efficient MRF Segmentation of DTI White Matter Tracts using an Overlapping Fiber Model", Proceedings of the MICCAI workshop of Diffusion Modeling and the Fiber Cup, 2009.
6. P-L Bazin, J. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham, "Belief Propagation Based Segmentation of White Matter Tracts in DTI", Proceedings of MICCAI, 2009.
7. J. A. Bogovic, A. Carass, J. Wan, B. A. Landman, and J. L. Prince. “Automatically identifying white matter tracts using cortical labels,” In Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging, Paris, France, May 2008
8. X. Fan, P.L. Bazin, J.A. Bogovic, Y. Bai, and J.L. Prince "A Multiple Deformable Model Framework for Homeomorphic 3D Medical Image Segmentation," Mathematical Methods in Biomedical Image Analysis, Anchorage, Alaska, June 2008
9. B. Landman, J. Bogovic, J. Prince: Compressed sensing of multiple intra-voxel orientations with traditional dti. In: Proceedings of the MICCAI workshop on Computational Diffusion MRI, New York (2008)

Published Abstracts

1. J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying, "Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
2. C. Zhao, D. Chen, A. Carass, M. Chen, J.A. Bogovic, J.L. Prince "A Java Application for Manually Editing Cortical Labels", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
3. C. Zhao, A. Carass, M. Chen, J.A. Bogovic, D. Chen , J.L. Prince "A Protocol for Manual Correction of Gyral Based Cortical Labels", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
4. J. Vogelstein, J.A. Bogovic, A.Carass, W.Gray, J.L. Prince, B.A. Landman, D.L. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein, "Graph-Theoretical Methods for Statistical Inference on MR Connectome Data", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
5. J.A. Bogovic, M. Chen, A. Carass, P-L Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman, "Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
6. B.A. Landman, H. Wan, J.A. Bogovic, P-L Bazin and J.L. Prince, "Accelerated Compressed Sensing of Diffusion-Inferred Intra-Voxel Structure through Adaptive Refinement", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
7. B.A. Landman, H. Wan, J.A. Bogovic, P.C. van Zijl, P-L Bazin and J.L. Prince, "In the Pursuit of Intra-Voxel Fiber Orientations: Comparison of Compressed Sensing DTI and Q-Ball MRI", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
8. J.A. Bogovic, R. Nicoletto, B.A. Landman, J.L. Prince, S.H. Ying. “Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes”, Organization for Human Brain Mapping, San Francisco, California, June 2009
9. J. Wan, A. Carass, J.A. Bogovic, R. Nicoletto, J.L. Prince “Automated Cerebellum Extraction From Whole Head 3D MR Images”, Organization for Human Brain Mapping, San Francisco, California, June 2009
10. B.A. Landman, B. Lucas, J.A. Bogovic, A. Carass, J.L. Prince “A Rapid Prototyping Environment for NeuroImaging in Java”, Organization for Human Brain Mapping, San Francisco, California, June 2009
11. B.A. Landman, J.A. Bogovic, J.L. Prince "Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets" International Society for Magnetic Resonance in Medicine, Honolulu, Hawaii, April 2009
12. J.A. Bogovic, A. Carass, J. Wan, B.A. Landman, J.L. Prince “DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity”, Organization for Human Brain Mapping, Melbourne, Australia, June 2008

Teaching

• Feedback Control in Biological Signaling Pathways, TA under Prof. Pablo Iglesias, Fall 2007
• Part-time Drumset Instructor, Winter-Spring 2007

Mentoring

• Delineation of Cerebellar Lobules
  • Wade Mayes; Summer 2007
  • Ariel Zhao, Karin Hwang; Winter 2008
  • Rachel Nicoletto, Charles Ang, Steve Wang; Summer 2008
  • Lauren Drake, Javaneh Jabbari; Spring, Summer 2009
  • Lorre Atlan; Ami Kumordzie; Fall 2009, Spring 2010
• James Barger, Manual Parcellation of the Thalamic Nuclei, Fall 2009, Spring 2010
• Jade Velasquez, "Thalamus Parcellation Machine", Summer 2008