Difference between revisions of "Publications/Brain Mapping"

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(Put the 1990s publications on a separate wiki page that is trancluded into this one.)
(Split the 2000s into a trancluded wiki page.)
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{{iacl-pub|author=S.H. Ying, B.A. Landman, S. Chowdhury, A.H. Sinofsky, A. Gambini, S. Mori, D.S. Zee, and J.L. Prince|title=Orthogonal diffusion-weighted MRI measures distinguish region-specific degeneration in cerebellar ataxia subtypes|journal=J. Neurol.|number=256(11):1939-1942|when=November 2009|doi=10.1007/s00415-009-5269-1|pubmed=19653028|pmcid=2789274}}
 
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{{iacl-pub|author=P.-L. Bazin, J.A. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham|title=Belief Propagation Based Segmentation of White Matter Tracts in DTI|conf=miccai2009|number=pp. 943-950|doi=10.1007/978-3-642-04268-3|pubmed=20426079}}
 
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{{iacl-pub|author= B.A. Landman, P.-L. Bazin, S.A. Smith, and J.L. Prince|title=Robust Estimation of Spatially Variable Noise Fields |jrnl=mrm|when=62(2):500-509, August 2009|doi=10.1002/mrm.22013|pubmed=19526510|pmcid=2806192}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging|jrnl=jmri|number=27(6):741-751|when=July 2009|doi=doi:10.1016/j.mri.2009.01.001|pubmed=19250784|pmcid=2733233}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, D.S. Reich, and D.L. Pham|title=Automated Cortical Reconstruction of Brains with Multiple Sclerosis|conf=isbi2009|doi=10.1109/ISBI.2009.5193311}}
 
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{{iacl-pub|author=S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince|title=A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images|conf=isbi2009|doi=10.1109/ISBI.2009.5193070|pubmed=20126426|pmcid=2814436}}
 
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{{iacl-pub|author=B.A. Landman, J.C. Hoyt, E.J. Sax, and K.P. Smith|title=NeuroWeb Database: A Laboratory Management System for Neuroimaging Coordination, Collaboration and Analysis|conf=hbm2009|doi=10.1016/S1053-8119(09)70586-5}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, and D.L. Pham|title=An Automated Pipeline for Cortical Reconstruction of Brains with MS|conf=hbm2009|doi=10.1016/S1053-8119(09)70836-5}}
 
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{{iacl-pub|author=J. Bogovic, R. Nicoletto, B. Landman, J.L. Prince, and S. Ying|title=Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes|conf=hbm2009|doi=10.1016/S1053-8119(09)71895-6}}
 
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{{iacl-pub|author=B.A. Landman, B.C. Lucas, J.A. Bogovic, A. Carass, and J.L. Prince|title=A Rapid Prototyping Environment for NeuroImaging in Java|conf=hbm2009|doi=10.1016/S1053-8119(09)70239-3}}
 
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{{iacl-pub|author=J. Wan, A. Carass, P.-L. Bazin, S.H. Ying, and J.L. Prince|title=Automated Cerebellum Extraction From Whole Head 3D MR Images|conf=hbm2009|doi=10.1016/S1053-8119(09)71592-7}}
 
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{{iacl-pub|author=M.E. Richardson, D. Crocetti, J. Wan, D.L. Pham, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky|title=Automated MRI Parcellation of the Frontal Lobe|conf=hbm2009|doi=doi:10.1016/S1053-8119(09)70451-3}}
 
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{{iacl-pub|author=B.A. Landman|title=CATNAP and JIST: DTI Processing Made Ridiculously Simple|conf=ismrm2009}}
 
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{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L Prince|title=Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets|conf=ismrm2009}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, and P.C.M. van Zijl|title=Optimal An Open Source Monte Carlo Framework for Simulating Diffusion in Biologically Relevant Geometries including Broken, Crimped and Bulging Axons|conf=ismrm2009}}
 
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{{h4|2008}}
 
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{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces|jrnl=tmi|number=27(12):1739-1753|when=December 2008|doi=10.1109/TMI.2008.925080|pubmed=19033090|pmcid=2597639}}
 
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{{iacl-pub|author=N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, D.S. Reich, P.A. Calabresi, and D.L. Pham |title=Multiple Sclerosis Lesion Segmentation Using Statistical and Topological Atlases|conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince |title=Tensor Interpolation by Concise Local Estimation of Anisotropy and Rotation |conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, J. Bogovic, and J.L. Prince |title=Compressed Sensing of Multiple Intra-Voxel Orientations with Traditional DTI |conf=miccai2008}}
 
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{{iacl-pub|author=B.A. Landman, J. Farrell, H. Huang, J.L. Prince, and S. Mori|title= Diffusion Tensor Imaging at Low SNR:Non-monotonic behaviors of tensor contrasts|jrnl=mri|number=26(6):790-800|when=July 2008|doi=10.1016/j.mri.2008.01.034|pubmed=18499378|pmcid=2583784}}
 
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{{iacl-pub|author=A. Ozturk, A.D. Sasson, J.A.D. Farrell, B.A. Landman, A.C.B.S. da Motta, A. Aralasmak, and D.M. Yousem |title= Regional Differences in Diffusion Tensor Imaging Measurements: Assessment of Intra-Rater and Inter-Rater Variability|pub=American Journal of Neuroradiology|number=29:1124-1127|when=June 2008}}
 
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{{iacl-pub|author=B. Lucas, B. Landman, J.L. Prince, and D. Pham|title=MAPS: A Free Medical Image Processing Pipeline|conf=hbm2008}}
 
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{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Characterizing Regional Gray Matter Thickness Trends in Normal Aging|conf=hbm2008}}
 
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{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity|conf=hbm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince.|title= Robust Maximum Likelihood Estimation in Q-space MRI|conf=isbi2008|doi=10.1109/ISBI.2008.4541134}}
 
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{{iacl-pub|author=J. Wan, A. Carass, S.M. Resnick, and J.L. Prince|title=Automated Reliable Labeling of the Cortical Surface|conf=isbi2008|doi=10.1109/ISBI.2008.4541027}}
 
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{{iacl-pub|author=J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince|title=Automatically identifying white matter tracts using cortical labels|conf=isbi2008|doi=10.1109/ISBI.2008.4541141|pubmed=20119500|pmcid=2812932}}
 
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{{iacl-pub|author=S. Roy, H. Agarwal, A. Carass, Y. Bai, D.L. Pham, and J.L. Prince|title=Fuzzy C-Means with Variable Compactness|conf=isbi2008|doi=10.1109/ISBI.2008.4541030|pubmed=20126427|pmcid=2814437}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust DTI Noise Level Estimation Improves RESTORE Tensor Estimation|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince|title=Robust Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.C.M. van Zijl, and J.L. Prince|title=Q-Space Diffusion Weighted MRI Analyzed with Maximizing Rician Likelihood Improves Reliability and Tissue Contrast|conf=ismrm2008}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince|title=Exploring the Information Content of q-Space Diffusion Weighted Imaging: Application to Multiple Sclerosis (MS) Spinal Cord Lesions|conf=ismrm2008}}
 
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{{h4|2007}}
 
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{{iacl-pub|author=B.A. Landman, P.-L. Bazin, and J.L. Prince.|title=Diffusion Tensor Estimation by Maximizing Rician Likelihood|conf=mmbia2007}}
 
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{{iacl-pub|author=J.A. Farrell, B.A. Landman, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of SNR on the Accuracy and Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T |jrnl=jmri|number=26(3):756-767|when=August 2007|pubmed=17729339}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Farrell, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori|title= Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T|jrnl=ni|number=36(4):1123-1138|when=July 2007}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, N-L. Patel, S. Mori, and J.L. Prince|title=DTI Fiber Tracking: The Importance of Adjusting DTI Gradient Tables for Motion Correction. CATNAP – A Tool to Simplify and Accelerate DTI Analysis|conf=hbm2007}}
 
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{{iacl-pub|author=B.A. Landman, A.X. Du, W.D. Mayes, J.L. Prince, and S.H. Ying|title=Diffusion Tensor Imaging Enables Robust Mapping of the Deep Cerebellar Nuclei|conf=hbm2007}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=Tradeoffs Between Tensor Orientation and Anisotropy in DTI: Impact of Diffusion Weighting Scheme|conf=ismrm2007}}
 
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{{iacl-pub|author=B.A. Landman, H. Huang, J.L. Prince, and S.H. Ying|title=A Window for High-Resolution Post-Mortem DTI: Mapping Contrast Changes in Neural Degeneration|conf=ismrm2007}}
 
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{{iacl-pub|author=B.A. Landman, S. Mori, and J.L. Prince|title=Systematic Evaluation of Linear and Nonlinear DTI Estimation Methods: An Open Framework|conf=ismrm2007}}
 
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{{iacl-pub|author=A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett, and J.L. Prince|title=A Joint Registration and Segmentation Approach to Skull Stripping|conf=isbi2007|doi=10.1109/ISBI.2007.356937}}
 
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{{iacl-pub|author=P. Aksit, J.A. Derbyshire, and J.L. Prince|title=Three-point method for fast and robust field mapping for EPI geometric distortion correction|conf=isbi2007|doi=10.1109/ISBI.2007.356808}}
 
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{{h4|2006}}
 
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{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Octree-based Topology-preserving Isosurface Simplification|conf=mmbia2006}}
 
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{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, A.S.K. Liu, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=Delineation of Cerebellar Fiber Tracts on Anatomically Aligned Planes with ViPAR, a Novel MRI Visualization and Manipulation Tool|conf=hbm2006}}
 
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{{iacl-pub|author=B.A. Landman, S. Chowdhury, A.H. Sinofsky, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying|title=s-Image Representation of Diffusion Tensor Contrast and Fiber Geometry: Leukometric Analysis in the Brainstem and Cerebellum|conf=hbm2006}}
 
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{{iacl-pub|author=H. Huang, A. Carass, J.L. Prince, B. Landman, P.C.M. van Zijl, and S. Mori|title=Cortico-cortical Connectivity Revealed by DTI-based Tractography|conf=ismrm2006}}
 
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{{iacl-pub|author=B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince|title=On the Coregistration of Diffusion Weighted Images|conf=ismrm2006}}
 
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{{iacl-pub|author=B.A. Landman, J.A.D. Farrell, S. Mori, P.C.M. van Zijl, and J.L. Prince|title=Optimal Partitioning of Diffusion Weighting Schemes|conf=ismrm2006}}
 
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{{iacl-pub|author=P. Anbazhagan, A. Carass, P.-L. Bazin, and J.L. Prince|title=Automatic Estimation of Mid Sagittal Plane and AC-PC alignment based on Nonrigid Registration|conf=isbi2006|doi=10.1109/ISBI.2006.1625046}}
 
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{{h4|2005}}
 
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{{iacl-pub|author=Y. Bai, X. Han, D. Pham, and J.L. Prince|title=Super-resolved multi-channel fuzzy segmentation of MR brain images|conf=spie2005}}
 
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{{h4|2004}}
 
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{{iacl-pub|author=D. Tosun, M.E. Rettmann, D.Q. Naiman, S.M. Resnick, M.A. Kraut, and J.L. Prince|title=Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study|conf=miccai2004}}
 
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{{iacl-pub|author=X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J.L. Prince|title=CRUISE: Cortical Reconstruction Using Implicit Surface Evolution|jrnl=ni|number=23(3):997-1012|when=2004|doi=10.1016/j.neuroimage.2004.06.043}}
 
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{{iacl-pub|author=D. Pham and J.L. Prince|title=Robust Unsupervised Tissue Classification in MR Images|conf=isbi2004|doi=10.1109/ISBI.2004.1398486}}
 
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{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=An Automated Method for Finding Curves of Sulcal Fundi on the Human Cortical Surface|conf=isbi2004|doi=10.1109/ISBI.2004.1398777}}
 
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{{iacl-pub|author=Y. Bai, X. Han, and J.L. Prince|title=Super-resolution Reconstruction of MR Brain Images|conf=ciss2004}}
 
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{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Han, X. Tao, C. Xu, S.M. Resnick, D. Pham, and J.L. Prince|title=Cortical Surface Segmentation and Mapping|jrnl=ni|number=23:S108-S118|when=2004|doi=10.1016/j.neuroimage.2004.07.042|pubmed=15501080}}
 
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{{iacl-pub|author=D. Tosun and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|jrnl=mia|number=8:295-309|when=2004|doi=10.1016/j.media.2004.06.020}}
 
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{{h4|2003}}
 
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{{iacl-pub|author=D. Tosun, M.E. Rettmann, and J.L. Prince|title=Mapping Techniques for Aligning Sulci Across Multiple Brains|conf=miccai2003}}
 
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{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A topology preserving level set method for geometric deformable models|jrnl=pami|number=25(6):755-768|when=June 2003|doi=10.1109/TPAMI.2003.1201824}}
 
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{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=Topology-Preserving Geometric Deformable Models and Brain Reconstruction|pub=Geometric Level Set Methods in Imaging, Vision, and Graphics|loc=Edited by Stanley Osher and Nikos Paragios, Springer-Verlag|when=2003|doi=10.1007/0-387-21810-6_22}}
 
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{{iacl-pub|author=K.J. Behnke, M.E. Rettmann, D.L. Pham, D. Shen, S.M. Resnick, C. Davatzikos, and J.L. Prince|title=Automatic classification of sulcal regions of the human brain cortex using pattern recognition|conf=spie2003|pnumber=p153|doi=10.1117/12.480834}}
 
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{{h4|2002}}
 
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{{iacl-pub|author=X. Tao, J.L. Prince, and C. Davatzikos|title=Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain|jrnl=tmi|when=21(5):513-524, May 2002|doi=10.1109/TMI.2002.1009387|pubmed=12071622}}
 
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{{iacl-pub|author=X. Han, C. Xu, U. Braga-Neto, and J.L. Prince|title=Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm|jrnl=tmi|when=21(2):109-121, February 2002|doi=10.1109/42.993130|pubmed=11929099}}
 
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{{iacl-pub|author=M.E. Rettmann, X. Tao, and J.L. Prince|title=Assisted labeling techniques for the human brain cortex|conf=spie2002|pnumber=p148|doi=10.1117/12.467134}}
 
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{{iacl-pub|author=D.L. Pham, X. Han, M.E. Rettmann, C. Xu, D. Tosun, S.M. Resnick, and J.L. Prince|title=New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm|conf=spie2002|pnumber=p147|doi=10.1117/12.467145}}
 
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{{h4|2001}}
 
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{{iacl-pub|author=X. Han, C. Xu, and J.L. Prince|title=A Topology Preserving Deformable Model Using Level Sets|conf=cvpr2001|number=2:765-770|loc=Kauai, Hawai|when=8-14 December 2001|pnumber=p131|doi=10.1109/CVPR.2001.991042}}
 
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{{iacl-pub|author=X. Han, C. Xu, D. Tosun, and J.L. Prince|title=Cortical Surface Reconstruction Using a Topology Preserving Geometric Deformable Model|conf=mmbia2001|doi=10.1109/MMBIA.2001.991736}}
 
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{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Automated Parcellation of the Cortical Surface for Computation of Regional Gyrification Indices|conf=hbm2001}}
 
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{{iacl-pub|author=D. Tosun, M.E. Rettmann, X. Tao, X. Han, C. Xu, and J.L. Prince|title=Calculation of Human Cerebral Cortical Thickness on Opposing Sulcal Banks|conf=hbm2001}}
 
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{{iacl-pub|author=X. Tao, X. Han, M.E. Rettmann, J.L. Prince, and C. Davatzikos|title=Statistical Study on Cortical Sulci of Human Brains|conf=ipmi2001}}
 
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{{iacl-pub|author=X. Han, C. Xu, M.E. Rettmann, and J.L. Prince|title=Automatic Segmentation Editing for Cortical Surface Reconstruction|conf=spie2001}}
 
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{{iacl-pub|author=D. Tosun and J.L. Prince|title=A Hemispherical Map for the Human Brain Cortex|conf=spie2001}}
 
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{{h4|2000}}
 
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{{iacl-pub|author=M.E. Rettmann, X. Han, and J.L. Prince|title=Watersheds on the Cortical Surface for Automated Sulcal Segmentation|conf=mmbia2000|number=pp. 20-27|doi=10.1109/MMBIA.2000.852356}}
 
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{{iacl-pub|author=M.E. Rettmann, X. Han, D.L. Pham, and J.L. Prince,|title=Geodesics for Sulcal Segmentation and Depth Measurements|conf=hbm2000}}
 
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{{iacl-pub|author=D. Yu, C. Xu, and J.L. Prince|title=A New Surface Editing Tool for Generating Truth Models of the Human Cortical Surface|conf=hbm2000}}
 
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{{iacl-pub|author=C. Xu, X. Han, and J.L. Prince|title=Improving Cortical Surface Reconstruction Accuracy Using an Anatomically Consistent Gray Matter Representation|conf=hbm2000}}
 
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{{iacl-pub|author=X. Han, M.E. Rettmann, C. Xu, and J.L. Prince|title=Morphology on Triangle Meshes Using Geodesic Distance|conf=ciss2000}}
 
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{{iacl-pub|author=D.N. Yu, C. Xu, M.E. Rettmann, D.L. Pham, and J.L. Prince|title=Quantitative Validation of a Deformable Cortical Surface Model|conf=spie2000|doi=10.1117/12.387673}}
 
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{{iacl-pub|author=D. Yu|title=Quantitative Validation of a Cortical Surface Reconstruction Method|pub=MSE thesis, The Johns Hopkins University|when=January, 2000}}
 
  
  
 
{{:Publications/Brain_Mapping/1990s}}
 
{{:Publications/Brain_Mapping/1990s}}

Revision as of 17:22, 1 May 2013

<meta name="title" content="Brain Mapping Publications"/>

Publications

Biological Brain Image Processing Image-Guided OCT
Motion Estimation Mapping and Analysis Interventions


FAIR ACADEMIC USE STATEMENT
Publications below are for individual use under the auspices and protection of FAIR ACADEMIC USE.
Please cite appropriately in references, and contact the publisher for subscription / purchase of original work.

Brain Mapping

2013

  • J.A. Bogovic, P.L. Bazin, S.H. Ying, and J.L. Prince, "Automated Segmentation of the Cerebellar Lobules using Boundary Specific Classification and Evolution", 23rd Conference on Information Processing in Medical Imaging (IPMI 2013), Asilomar California, USA, June 29 - July 3, 2013.
  • J. Stough, C. Ye, S.H. Ying, and J.L. Prince, "Thalamic Parcellation from Multi-Modal Data using Random Forest Learning", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
  • C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince, "Segmentation of the Complete Superior Cerebellar Peduncles using a Multi-object Geometric Deformable Model", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
  • S. Roy, A. Carass, and J.L. Prince, "Patch Based Intensity Normalization of Brain MR Images", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
  • S. Roy, A. Carass, N. Shiee, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince, "Longitudinal Intensity Normalization in the presence of Multiple Sclerosis Lesions", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
  • A. Jog, S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Synthesis through Patch Regression", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
  • Z. Yang, A. Carass, and J.L. Prince, "Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
  • M. Bilgel, S. Roy, A. Carass, P.A. Nyquist, and J.L. Prince, "Automated Anatomical Labeling of the Cerebral Arteries using Belief Propagation", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
  • M. Chen, A. Carass, D.S. Reich, P.A. Calabresi, D.L. Pham, and J.L. Prince, "Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
  • A. Jog, S. Roy, A. Carass, and J.L. Prince, "Pulse Sequence based Multi-acquisition MR Intensity Normalization", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
  • S. Roy, A. Carass, and J.L. Prince, "Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
  • C. Ye, J.A. Bogovic, S.H. Ying, and Jerry L. Prince, "Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
  • J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying, "Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters", NeuroImage, 64(1):616-629, 2013. (doi) (PubMed)


2012

  • B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "System for Integrated Neuroimaging Analysis and Processing of Structure", Neuroinformatics, In Press, 2012. (doi) (PubMed)
  • P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross, "Brain metabolite alterations and cognitive dysfunction in early Huntington's disease", Movement Disorders, 27(7):895-902, June 2012. (doi) (PubMed)
  • S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Consistent Segmentation using a Rician Classifier", Medical Image Analysis, 16(2):524-535, 2012. (doi) (PubMed)
  • Z. Yang, A. Carass, and J.L. Prince, "Automatic Sulcal Curve Extraction with MRF Based Shape Prior", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012.
  • C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying, "Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012.
  • B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI", NeuroImage, 59(3):2175–2186, 2012. (doi)
  • Z. Yang, A. Carass, C. Chen, and J.L. Prince, "Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (doi)
  • X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince, "Topology Preserving Brain Tissue Segmentation Using Graph Cuts", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012), Breckenridge, CO, January 9, 2012. (doi)


2011

  • B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee and A.W. Toga, J.L. Prince, and S.H. Ying, "MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2", The Cerebellum, 1-8, 2011. (doi) (PubMed)
  • P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham, "Direct segmentation of the major white matter tracts in diffusion tensor images", NeuroImage, 58(2):458-468, September 2011. (doi) (PubMed)
  • A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis", NeuroImage, 56(4):1982-1992, June 2011. (doi) (PubMed) (PMCID 3105165)
  • N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham, "Segmentation of brain images using adaptive atlases with application to ventriculomegaly", 22nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (doi) (PubMed) (PMCID 3478153)
  • S. Roy, A. Carass, and J.L. Prince, "A Compressed Sensing Approach For MR Tissue Contrast Synthesis", 22nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (doi) (PubMed) (PMCID 3398746)
  • H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori, "A framework on surface-based connectivity quantification for the human brain", Journal of Neuroscience Methods, 197(2):324-332, April 2011. (doi) (PubMed) (PMCID 3081907)
  • A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince, "Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation", 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), Quebec, Canada, June 26-30, 2011.
  • N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, D.L. Pham, "Fiber tractography and tract segmentation in multiple sclerosis lesions", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
  • M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince, "Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
  • S. Roy, A. Carass, and J.L. Prince, "Compressed Sensing Based Intensity Non-Uniformity Correction", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
  • M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince, "Distance Transforms in Multi Channel MR Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi)
  • S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince, "Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi)
  • F.E.A. ElShahaby, B.A. Landman, and J.L. Prince, "Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi) (PubMed) (PMCID 3087384)
  • B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl, "Multi-parametric neuroimaging reproducibility: A 3-T resource study", NeuroImage, 54(4):2854–2866, 2011. (doi) (PubMed) (PMCID 3020263)


2010

  • A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying, "Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration", Journal of Neurology, 257(8):1406-1408, August 2010. (doi) (PubMed) (PMCID 2963035)
  • B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham, "JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis", NCI's NCRI, Washington D.C., June 21-22, 2010.
  • M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince and S.M. Resnick, "Longitudinal changes in cortical thickness associated with normal aging", NeuroImage, 52(4):1215-1223, October 2010. (doi) (PubMed) (PMCID 2910226)
  • K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, "Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities", Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010. (doi) (PubMed) (PMCID 2998761)
  • N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Cortical thinning in Multiple Sclerosis", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich, "Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying, "Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Multi-Channel Enhancement of the Adaptive Bases Algorithm", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince, "A Protocol for Manual Correction of Gyral Based Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince, "A Java Application for Manually Editing Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein, "Graph-Theoretical Methods for Statistical Inference on MR Connectome Data", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman, "Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
  • S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince, "Longitudinal Changes of White Matter Lesions", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
  • S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince, "MR Contrast Synthesis for Lesion Segmentation", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (doi) (PubMed) (PMCID 2995277)
  • A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich, "MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability", Multiple Sclerosis, 16(2):166-77, 2010. (doi) (PubMed) (PMCID 2820126)
  • J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi, "Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS", Annual Meeting of the American Academy of Neurology (AAN 2010), Toronto, Canada, April 10-17, 2010.
  • B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman, "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software", Neuroinformatics, 8:5-17, March 2010. (doi) (PubMed) (PMCID 2860951)
  • J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince, "Statistical Recombination of Rater Labels on Surfaces", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2997739)
  • S. Roy, A. Carass, and J.L. Prince, "Synthesizing MR contrast and resolution through a patch matching technique", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2860803)
  • X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "A novel contrast for DTI visualization for thalamus delineation", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi)
  • B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2854412)
  • N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham, "A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions", NeuroImage, 49(2):1524-1535, January 2010. (doi) (PubMed) (PMCID 2806481)


Publications/Brain Mapping/2000s


Publications/Brain Mapping/1990s

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