Difference between revisions of "Resources"
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{{h3|Progression Score Model}} | {{h3|Progression Score Model}} | ||
* The Progression Score Model Toolkit can be obtained from [http://www.nitrc.org/projects/progscore/ the NITRC project page]. | * The Progression Score Model Toolkit can be obtained from [http://www.nitrc.org/projects/progscore/ the NITRC project page]. | ||
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{{h3|Cerebellar Lobule Segmentation using Graph Cuts}} | {{h3|Cerebellar Lobule Segmentation using Graph Cuts}} | ||
* [http://www.iacl.ece.jhu.edu/~amod/cerlobule_seg_release_06_01_2016.tar.gz Cerebellar Lobule Segmentation Code] can be used to parcellate the cerebellum into lobules given a T1w MRI image | * [http://www.iacl.ece.jhu.edu/~amod/cerlobule_seg_release_06_01_2016.tar.gz Cerebellar Lobule Segmentation Code] can be used to parcellate the cerebellum into lobules given a T1w MRI image | ||
Revision as of 04:19, 2 June 2016
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Resources
GVF Software
- 2D GVF code for Matlab is available by following this link.
- 2D Multigrid GVF code in C is available by following this link.
- 3D GVF example Java code is available here. This 3D version is built around JIST.
JIST
- The Java Image Science Toolkit (JIST) has a project page and downloads.
Validation Data for Cortical Reconstruction Algorithms
- The cortical validation resource for evaluation of cortical reconstruction algorithms on both normal subjects and subjects with White Matter lesions.
HARP
- For MATLAB demonstration software send an email to
and expect a reply within five business days. We also have a collection of frequently asked questions about our HARP software.
MGDM
- Source code and demonstrations for the Multiple-object Geometric Deformable Model (MGDM) can be found on the MGDM project page hosted by NITRC.
- A movie demo of the decomposition and evolution of MGDM.
MIMECS
- MIMECS is described in: S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Example Based Contrast Synthesis", IEEE Trans. on Medical Imaging, 32(12):2348-2363, 2013. (PDF) (doi)
- Code and sample data is available on our NITRC Project Page titled Image Synthesis.
AURA Tools
- The AURA Tools software package allows for the automated processing and segmentation of Optical Coherence Tomography images of the macula cube. It is available from the NITRC website.
- Version 1.2 includes the software originally presented in: A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Retinal layer segmentation of macular OCT images using boundary classification", Biomedical Optics Express, 4(7):1133-1152, 2013. (PDF) (doi) (PMCID 3704094)
Progression Score Model
- The Progression Score Model Toolkit can be obtained from the NITRC project page.
Cerebellar Lobule Segmentation using Graph Cuts
- Cerebellar Lobule Segmentation Code can be used to parcellate the cerebellum into lobules given a T1w MRI image
