Difference between revisions of "Resources"
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<meta name="title" content="Resources"/> | <meta name="title" content="Resources"/> | ||
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| − | + | {{h2|General Image Processing}} | |
{{h3|GVF Software}} | {{h3|GVF Software}} | ||
* 2D {{static|gvf/|GVF}} code for Matlab is [http://www.nitrc.org/frs/?group_id=271 available by following this link]. | * 2D {{static|gvf/|GVF}} code for Matlab is [http://www.nitrc.org/frs/?group_id=271 available by following this link]. | ||
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{{h3|Validation Data for Cortical Reconstruction Algorithms}} | {{h3|Validation Data for Cortical Reconstruction Algorithms}} | ||
* The [[cortical_data/|cortical validation resource]] for evaluation of cortical reconstruction algorithms on both normal subjects and subjects with White Matter lesions. | * The [[cortical_data/|cortical validation resource]] for evaluation of cortical reconstruction algorithms on both normal subjects and subjects with White Matter lesions. | ||
| − | {{h3| | + | {{h3|Cerebellar Lobule Segmentation using Graph Cuts}} |
| − | * | + | * [http://www.iacl.ece.jhu.edu/~amod/cerlobule_seg_release_06_01_2016.tar.gz Cerebellar Lobule Segmentation Code] can be used to parcellate the cerebellum into lobules given a T1w MRI image |
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* MIMECS is described in: {{pub|author=S. Roy, A. Carass, and J.L. Prince|title=[[Magnetic Resonance Image Example Based Contrast Synthesis|Magnetic Resonance Image Example Based Contrast Synthesis]]|jrnl=tmi|number=32(12):2348-2363|when=2013|doi=10.1109/TMI.2013.2282126|pdf=/proceedings/iacl/2013/RoyxTMI13-MIMECS.pdf}} | * MIMECS is described in: {{pub|author=S. Roy, A. Carass, and J.L. Prince|title=[[Magnetic Resonance Image Example Based Contrast Synthesis|Magnetic Resonance Image Example Based Contrast Synthesis]]|jrnl=tmi|number=32(12):2348-2363|when=2013|doi=10.1109/TMI.2013.2282126|pdf=/proceedings/iacl/2013/RoyxTMI13-MIMECS.pdf}} | ||
* Code and sample data is available on our NITRC Project Page titled [http://www.nitrc.org/projects/image_synthesis/ Image Synthesis]. | * Code and sample data is available on our NITRC Project Page titled [http://www.nitrc.org/projects/image_synthesis/ Image Synthesis]. | ||
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| + | {{h3|Progression Score Model}} | ||
| + | * The Progression Score Model Toolkit can be obtained from [http://www.nitrc.org/projects/progscore/ the NITRC project page]. | ||
| + | {{h2|Retinal}} | ||
{{h3|AURA Tools}} | {{h3|AURA Tools}} | ||
* The [http://www.nitrc.org/projects/aura_tools/ AURA Tools] software package allows for the automated processing and segmentation of Optical Coherence Tomography images of the macula cube. It is available from the NITRC website. | * The [http://www.nitrc.org/projects/aura_tools/ AURA Tools] software package allows for the automated processing and segmentation of Optical Coherence Tomography images of the macula cube. It is available from the NITRC website. | ||
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| − | + | {{h3|HARP}} | |
| − | + | * For MATLAB demonstration software send an email to [[Image:harp_email.jpg]] and expect a reply within five business days. We also have a collection of [[HARP FAQ|frequently asked questions]] about our HARP software. | |
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Revision as of 14:55, 18 November 2016
<meta name="title" content="Resources"/>
General Image Processing
GVF Software
- 2D GVF code for Matlab is available by following this link.
- 2D Multigrid GVF code in C is available by following this link.
- 3D GVF example Java code is available here. This 3D version is built around JIST.
JIST
- The Java Image Science Toolkit (JIST) has a project page and downloads.
Brain
Validation Data for Cortical Reconstruction Algorithms
- The cortical validation resource for evaluation of cortical reconstruction algorithms on both normal subjects and subjects with White Matter lesions.
Cerebellar Lobule Segmentation using Graph Cuts
- Cerebellar Lobule Segmentation Code can be used to parcellate the cerebellum into lobules given a T1w MRI image
MGDM
- Source code and demonstrations for the Multiple-object Geometric Deformable Model (MGDM) can be found on the MGDM project page hosted by NITRC.
- A movie demo of the decomposition and evolution of MGDM.
MIMECS
- MIMECS is described in: S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Example Based Contrast Synthesis", IEEE Trans. on Medical Imaging, 32(12):2348-2363, 2013. (PDF) (doi)
- Code and sample data is available on our NITRC Project Page titled Image Synthesis.
Progression Score Model
- The Progression Score Model Toolkit can be obtained from the NITRC project page.
Retinal
AURA Tools
- The AURA Tools software package allows for the automated processing and segmentation of Optical Coherence Tomography images of the macula cube. It is available from the NITRC website.
- Version 1.2 includes the software originally presented in: A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Retinal layer segmentation of macular OCT images using boundary classification", Biomedical Optics Express, 4(7):1133-1152, 2013. (PDF) (doi) (PMCID 3704094)
Cardiac
HARP
- For MATLAB demonstration software send an email to
and expect a reply within five business days. We also have a collection of frequently asked questions about our HARP software.
