Publications/Brain Mapping

Publications

Biological	Brain	Image Processing	Image-Guided	OCT
Motion Estimation	Mapping	and Analysis	Interventions

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Brain Mapping

2013

J. Stough, C. Ye, S.H. Ying, and J.L. Prince, "Thalamic Parcellation from Multi-Modal Data using Random Forest Learning", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince, "Segmentation of the Complete Superior Cerebellar Peduncles using a Multi-object Geometric Deformable Model", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
S. Roy, A. Carass, and J.L. Prince, "Patch Based Intensity Normalization of Brain MR Images", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
S. Roy, A. Carass, N. Shiee, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince, "Longitudinal Intensity Normalization in the presence of Multiple Sclerosis Lesions", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
A. Jog, S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Synthesis through Patch Regression", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
Z. Yang, A. Carass, and J.L. Prince, "Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013.
M. Bilgel, S. Roy, A. Carass, P.A. Nyquist, and J.L. Prince, "Automated Anatomical Labeling of the Cerebral Arteries using Belief Propagation", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
M. Chen, A. Carass, D.S. Reich, P.A. Calabresi, D.L. Pham, and J.L. Prince, "Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
A. Jog, S. Roy, A. Carass, and J.L. Prince, "Pulse Sequence based Multi-acquisition MR Intensity Normalization", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
S. Roy, A. Carass, and J.L. Prince, "Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
C. Ye, J.A. Bogovic, S.H. Ying, and Jerry L. Prince, "Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (doi)
J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying, "Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters", NeuroImage, 64(1):616-629, 2013. (doi) (PubMed)

2012

B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "System for Integrated Neuroimaging Analysis and Processing of Structure", Neuroinformatics, In Press, 2012. (doi) (PubMed)
P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross, "Brain metabolite alterations and cognitive dysfunction in early Huntington's disease", Movement Disorders, 27(7):895-902, June 2012. (doi) (PubMed)
S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Consistent Segmentation using a Rician Classifier", Medical Image Analysis, 16(2):524-535, 2012. (doi) (PubMed)
Z. Yang, A. Carass, and J.L. Prince, "Automatic Sulcal Curve Extraction with MRF Based Shape Prior", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012.
C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying, "Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012.
B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI", NeuroImage, 59(3):2175–2186, 2012. (doi)
Z. Yang, A. Carass, C. Chen, and J.L. Prince, "Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (doi)
X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince, "Topology Preserving Brain Tissue Segmentation Using Graph Cuts", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012), Breckenridge, CO, January 9, 2012. (doi)

2011

B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee and A.W. Toga, J.L. Prince, and S.H. Ying, "MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2", The Cerebellum, 1-8, 2011. (doi) (PubMed)
P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham, "Direct segmentation of the major white matter tracts in diffusion tensor images", NeuroImage, 58(2):458-468, September 2011. (doi) (PubMed)
A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis", NeuroImage, 56(4):1982-1992, June 2011. (doi) (PubMed) (PMCID 3105165)
N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham, "Segmentation of brain images using adaptive atlases with application to ventriculomegaly", 22^nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (PubMed)
S. Roy, A. Carass, and J.L. Prince, "A Compressed Sensing Approach For MR Tissue Contrast Synthesis", 22^nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (PubMed)
H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori, "A framework on surface-based connectivity quantification for the human brain", Journal of Neuroscience Methods, 197(2):324-332, April 2011. (doi) (PubMed) (PMCID 3081907)
A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince, "Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation", 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), Quebec, Canada, June 26-30, 2011.
N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, D.L. Pham, "Fiber tractography and tract segmentation in multiple sclerosis lesions", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince, "Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
S. Roy, A. Carass, and J.L. Prince, "Compressed Sensing Based Intensity Non-Uniformity Correction", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince, "Distance Transforms in Multi Channel MR Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi)
S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince, "Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi)
F.E.A. ElShahaby, B.A. Landman, and J.L. Prince, "Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi) (PubMed) (PMCID 3087384)
B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl, "Multi-parametric neuroimaging reproducibility: A 3-T resource study", NeuroImage, 54(4):2854–2866, 2011. (doi) (PubMed) (PMCID 3020263)

2010

A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying, "Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration", Journal of Neurology, 257(8):1406-1408, August 2010. (doi) (PubMed) (PMCID 2963035)
B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham, "JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis", NCI's NCRI, Washington D.C., June 21-22, 2010.
M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince and S.M. Resnick, "Longitudinal changes in cortical thickness associated with normal aging", NeuroImage, 52(4):1215-1223, October 2010. (doi) (PubMed) (PMCID 2910226)
K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, "Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities", Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010. (doi) (PubMed) (PMCID 2998761)
N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Cortical thinning in Multiple Sclerosis", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich, "Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying, "Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Multi-Channel Enhancement of the Adaptive Bases Algorithm", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince, "A Protocol for Manual Correction of Gyral Based Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince, "A Java Application for Manually Editing Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein, "Graph-Theoretical Methods for Statistical Inference on MR Connectome Data", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman, "Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince, "Longitudinal Changes of White Matter Lesions", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince, "MR Contrast Synthesis for Lesion Segmentation", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (doi) (PubMed) (PMCID 2995277)
A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich, "MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability", Multiple Sclerosis, 16(2):166-77, 2010. (doi) (PubMed) (PMCID 2820126)
J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi, "Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS", Annual Meeting of the American Academy of Neurology (AAN 2010), Toronto, Canada, April 10-17, 2010.
B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman, "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software", Neuroinformatics, 8:5-17, March 2010. (doi) (PubMed) (PMCID 2860951)
J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince, "Statistical Recombination of Rater Labels on Surfaces", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2997739)
S. Roy, A. Carass, and J.L. Prince, "Synthesizing MR contrast and resolution through a patch matching technique", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2860803)
X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "A novel contrast for DTI visualization for thalamus delineation", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi)
B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2854412)
N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham, "A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions", NeuroImage, 49(2):1524-1535, January 2010. (doi) (PubMed) (PMCID 2806481)

2009

S.H. Ying, B.A. Landman, S. Chowdhury, A.H. Sinofsky, A. Gambini, S. Mori, D.S. Zee, and J.L. Prince, "Orthogonal diffusion-weighted MRI measures distinguish region-specific degeneration in cerebellar ataxia subtypes", J. Neurol., 256(11):1939-1942, November 2009. (doi) (PubMed) (PMCID 2789274)
P.-L. Bazin, J.A. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham, "Belief Propagation Based Segmentation of White Matter Tracts in DTI", 12^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009), London, UK, September 20-24, 2009. (doi) (PubMed)
B.A. Landman, P.-L. Bazin, S.A. Smith, and J.L. Prince, "Robust Estimation of Spatially Variable Noise Fields", Magnetic Resonance in Medicine, 62(2):500-509, August 2009. (doi) (PubMed) (PMCID 2806192)
B.A. Landman, P.-L. Bazin, and J.L. Prince, "Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging", Journal of Magnetic Resonance Imaging, 27(6):741-751, July 2009. (doi) (PubMed) (PMCID 2733233)
N. Shiee, P.-L. Bazin, D.S. Reich, and D.L. Pham, "Automated Cortical Reconstruction of Brains with Multiple Sclerosis", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009. (doi)
S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince, "A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009. (doi) (PubMed) (PMCID 2814436)
B.A. Landman, J.C. Hoyt, E.J. Sax, and K.P. Smith, "NeuroWeb Database: A Laboratory Management System for Neuroimaging Coordination, Collaboration and Analysis", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
N. Shiee, P.-L. Bazin, and D.L. Pham, "An Automated Pipeline for Cortical Reconstruction of Brains with MS", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
J. Bogovic, R. Nicoletto, B. Landman, J.L. Prince, and S. Ying, "Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
B.A. Landman, B.C. Lucas, J.A. Bogovic, A. Carass, and J.L. Prince, "A Rapid Prototyping Environment for NeuroImaging in Java", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
J. Wan, A. Carass, P.-L. Bazin, S.H. Ying, and J.L. Prince, "Automated Cerebellum Extraction From Whole Head 3D MR Images", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
M.E. Richardson, D. Crocetti, J. Wan, D.L. Pham, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky, "Automated MRI Parcellation of the Frontal Lobe", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
B.A. Landman, "CATNAP and JIST: DTI Processing Made Ridiculously Simple", 17th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2009), Honolulu, Hawaii, April 18-24, 2009.
B.A. Landman, J. Bogovic, and J.L Prince, "Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets", 17th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2009), Honolulu, Hawaii, April 18-24, 2009.
B.A. Landman, J.A.D. Farrell, and P.C.M. van Zijl, "Optimal An Open Source Monte Carlo Framework for Simulating Diffusion in Biologically Relevant Geometries including Broken, Crimped and Bulging Axons", 17th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2009), Honolulu, Hawaii, April 18-24, 2009.

2008

D. Tosun and J.L. Prince, "A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces", IEEE Trans. on Medical Imaging, 27(12):1739-1753, December 2008. (doi) (PubMed) (PMCID 2597639)
N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, D.S. Reich, P.A. Calabresi, and D.L. Pham, "Multiple Sclerosis Lesion Segmentation Using Statistical and Topological Atlases", 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), New York, NY, September 6-10, 2008.
B.A. Landman, P.-L. Bazin, and J.L. Prince, "Tensor Interpolation by Concise Local Estimation of Anisotropy and Rotation", 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), New York, NY, September 6-10, 2008.
B.A. Landman, J. Bogovic, and J.L. Prince, "Compressed Sensing of Multiple Intra-Voxel Orientations with Traditional DTI", 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), New York, NY, September 6-10, 2008.
B.A. Landman, J. Farrell, H. Huang, J.L. Prince, and S. Mori, "Diffusion Tensor Imaging at Low SNR:Non-monotonic behaviors of tensor contrasts", Magnetic Resonance Imaging, 26(6):790-800, July 2008. (doi) (PubMed) (PMCID 2583784)
A. Ozturk, A.D. Sasson, J.A.D. Farrell, B.A. Landman, A.C.B.S. da Motta, A. Aralasmak, and D.M. Yousem, "Regional Differences in Diffusion Tensor Imaging Measurements: Assessment of Intra-Rater and Inter-Rater Variability", American Journal of Neuroradiology, 29:1124-1127, June 2008.
B. Lucas, B. Landman, J.L. Prince, and D. Pham, "MAPS: A Free Medical Image Processing Pipeline", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
J. Wan, A. Carass, S.M. Resnick, and J.L. Prince, "Characterizing Regional Gray Matter Thickness Trends in Normal Aging", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince, "DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince., "Robust Maximum Likelihood Estimation in Q-space MRI", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi)
J. Wan, A. Carass, S.M. Resnick, and J.L. Prince, "Automated Reliable Labeling of the Cortical Surface", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi)
J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince, "Automatically identifying white matter tracts using cortical labels", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi) (PubMed) (PMCID 2812932)
S. Roy, H. Agarwal, A. Carass, Y. Bai, D.L. Pham, and J.L. Prince, "Fuzzy C-Means with Variable Compactness", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi) (PubMed) (PMCID 2814437)
B.A. Landman, P.-L. Bazin, and J.L. Prince, "Robust DTI Noise Level Estimation Improves RESTORE Tensor Estimation", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
B.A. Landman, P.-L. Bazin, and J.L. Prince, "Robust Diffusion Tensor Estimation by Maximizing Rician Likelihood", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
B.A. Landman, J.A.D. Farrell, S.A. Smith, P.C.M. van Zijl, and J.L. Prince, "Q-Space Diffusion Weighted MRI Analyzed with Maximizing Rician Likelihood Improves Reliability and Tissue Contrast", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince, "Exploring the Information Content of q-Space Diffusion Weighted Imaging: Application to Multiple Sclerosis (MS) Spinal Cord Lesions", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.

2007

B.A. Landman, P.-L. Bazin, and J.L. Prince., "Diffusion Tensor Estimation by Maximizing Rician Likelihood", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2007), Rio de Janeiro, Brazil, October 14-15, 2007.
J.A. Farrell, B.A. Landman, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori, "Effects of SNR on the Accuracy and Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T", Journal of Magnetic Resonance Imaging, 26(3):756-767, August 2007. (PubMed)
B.A. Landman, J.A. Farrell, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori, "Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T", NeuroImage, 36(4):1123-1138, July 2007.
B.A. Landman, J.A.D. Farrell, N-L. Patel, S. Mori, and J.L. Prince, "DTI Fiber Tracking: The Importance of Adjusting DTI Gradient Tables for Motion Correction. CATNAP – A Tool to Simplify and Accelerate DTI Analysis", 13th Annual Meeting of the Organization for Human Brain Mapping (HBM 2007), Chicago, Illinois, June 10-14, 2007.
B.A. Landman, A.X. Du, W.D. Mayes, J.L. Prince, and S.H. Ying, "Diffusion Tensor Imaging Enables Robust Mapping of the Deep Cerebellar Nuclei", 13th Annual Meeting of the Organization for Human Brain Mapping (HBM 2007), Chicago, Illinois, June 10-14, 2007.
B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince, "Tradeoffs Between Tensor Orientation and Anisotropy in DTI: Impact of Diffusion Weighting Scheme", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
B.A. Landman, H. Huang, J.L. Prince, and S.H. Ying, "A Window for High-Resolution Post-Mortem DTI: Mapping Contrast Changes in Neural Degeneration", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
B.A. Landman, S. Mori, and J.L. Prince, "Systematic Evaluation of Linear and Nonlinear DTI Estimation Methods: An Open Framework", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett, and J.L. Prince, "A Joint Registration and Segmentation Approach to Skull Stripping", Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. (doi)
P. Aksit, J.A. Derbyshire, and J.L. Prince, "Three-point method for fast and robust field mapping for EPI geometric distortion correction", Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. (doi)

2006

Y. Bai, X. Han, and J.L. Prince, "Octree-based Topology-preserving Isosurface Simplification", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2006), New York City, New York, June 17-18, 2006.
B.A. Landman, S. Chowdhury, A.H. Sinofsky, A.S.K. Liu, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying, "Delineation of Cerebellar Fiber Tracts on Anatomically Aligned Planes with ViPAR, a Novel MRI Visualization and Manipulation Tool", 12th Annual Meeting of the Organization for Human Brain Mapping (HBM 2006), Florence, Italy, June 11-15, 2006.
B.A. Landman, S. Chowdhury, A.H. Sinofsky, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying, "s-Image Representation of Diffusion Tensor Contrast and Fiber Geometry: Leukometric Analysis in the Brainstem and Cerebellum", 12th Annual Meeting of the Organization for Human Brain Mapping (HBM 2006), Florence, Italy, June 11-15, 2006.
H. Huang, A. Carass, J.L. Prince, B. Landman, P.C.M. van Zijl, and S. Mori, "Cortico-cortical Connectivity Revealed by DTI-based Tractography", International Society for Magnetic Resonance in Medicine (ISMRM 2006), Seattle, Washington, May 16-12, 2007.
B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince, "On the Coregistration of Diffusion Weighted Images", International Society for Magnetic Resonance in Medicine (ISMRM 2006), Seattle, Washington, May 16-12, 2007.
B.A. Landman, J.A.D. Farrell, S. Mori, P.C.M. van Zijl, and J.L. Prince, "Optimal Partitioning of Diffusion Weighting Schemes", International Society for Magnetic Resonance in Medicine (ISMRM 2006), Seattle, Washington, May 16-12, 2007.
P. Anbazhagan, A. Carass, P.-L. Bazin, and J.L. Prince, "Automatic Estimation of Mid Sagittal Plane and AC-PC alignment based on Nonrigid Registration", Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Arlington, VA, April 6-9, 2006. (doi)

2005

Y. Bai, X. Han, D. Pham, and J.L. Prince, "Super-resolved multi-channel fuzzy segmentation of MR brain images", Proceedings of SPIE Medical Imaging (SPIE-MI 2005), San Diego, CA, February 16-21, 2005.

2004

D. Tosun, M.E. Rettmann, D.Q. Naiman, S.M. Resnick, M.A. Kraut, and J.L. Prince, "Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study", Seventh International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2004), Saint-Malo, France, September 26-30, 2004.
X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J.L. Prince, "CRUISE: Cortical Reconstruction Using Implicit Surface Evolution", NeuroImage, 23(3):997-1012, 2004. (doi)
D. Pham and J.L. Prince, "Robust Unsupervised Tissue Classification in MR Images", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004. (doi)
X. Tao, J.L. Prince, and C. Davatzikos, "An Automated Method for Finding Curves of Sulcal Fundi on the Human Cortical Surface", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004. (doi)
Y. Bai, X. Han, and J.L. Prince, "Super-resolution Reconstruction of MR Brain Images", Conference on Information Sciences and Systems (CISS 2004), Princeton, New Jersey, March 17-19, 2004.
D. Tosun, M.E. Rettmann, X. Han, X. Tao, C. Xu, S.M. Resnick, D. Pham, and J.L. Prince, "Cortical Surface Segmentation and Mapping", NeuroImage, 23:S108-S118, 2004. (doi) (PubMed)
D. Tosun and J.L. Prince, "Mapping Techniques for Aligning Sulci Across Multiple Brains", Medical Image Analysis, 8:295-309, 2004. (doi)

2003

D. Tosun, M.E. Rettmann, and J.L. Prince, "Mapping Techniques for Aligning Sulci Across Multiple Brains", Sixth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2003), Montréal, Québec, Canada, November 16-18, 2003.
X. Han, C. Xu, and J.L. Prince, "A topology preserving level set method for geometric deformable models", IEEE Trans. on Pattern Analysis Machine Intelligence, 25(6):755-768, June 2003. (doi)
X. Han, C. Xu, and J.L. Prince, "Topology-Preserving Geometric Deformable Models and Brain Reconstruction", Geometric Level Set Methods in Imaging, Vision, and Graphics, Edited by Stanley Osher and Nikos Paragios, Springer-Verlag, 2003. (doi)
K.J. Behnke, M.E. Rettmann, D.L. Pham, D. Shen, S.M. Resnick, C. Davatzikos, and J.L. Prince, "Automatic classification of sulcal regions of the human brain cortex using pattern recognition", Proceedings of SPIE Medical Imaging (SPIE-MI 2003), San Diego, CA, February 15-20, 2003. (doi)

2002

X. Tao, J.L. Prince, and C. Davatzikos, "Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain", IEEE Trans. on Medical Imaging, 21(5):513-524, May 2002. (doi) (PubMed)
X. Han, C. Xu, U. Braga-Neto, and J.L. Prince, "Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm", IEEE Trans. on Medical Imaging, 21(2):109-121, February 2002. (doi) (PubMed)
M.E. Rettmann, X. Tao, and J.L. Prince, "Assisted labeling techniques for the human brain cortex", Proceedings of SPIE Medical Imaging (SPIE-MI 2002), San Diego, CA, February 23-28, 2002. (doi)
D.L. Pham, X. Han, M.E. Rettmann, C. Xu, D. Tosun, S.M. Resnick, and J.L. Prince, "New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm", Proceedings of SPIE Medical Imaging (SPIE-MI 2002), San Diego, CA, February 23-28, 2002. (doi)

2001

X. Han, C. Xu, and J.L. Prince, "A Topology Preserving Deformable Model Using Level Sets", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), Kauai, Hawaii, December 8-14, 2001. (doi)
X. Han, C. Xu, D. Tosun, and J.L. Prince, "Cortical Surface Reconstruction Using a Topology Preserving Geometric Deformable Model", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2001), Kauai, Hawaii, December 9-10, 2001. (doi)
M.E. Rettmann, X. Han, and J.L. Prince, "Automated Parcellation of the Cortical Surface for Computation of Regional Gyrification Indices", Seventh International Conference on Functional Mapping of the Human Brain (HBM 2001), Brighton, U.K., June 10-14, 2001.
D. Tosun, M.E. Rettmann, X. Tao, X. Han, C. Xu, and J.L. Prince, "Calculation of Human Cerebral Cortical Thickness on Opposing Sulcal Banks", Seventh International Conference on Functional Mapping of the Human Brain (HBM 2001), Brighton, U.K., June 10-14, 2001.
X. Tao, X. Han, M.E. Rettmann, J.L. Prince, and C. Davatzikos, "Statistical Study on Cortical Sulci of Human Brains", 17th Conference on Information Processing in Medical Imaging (IPMI 2001), Davis, California, June 18-22, 2001.
X. Han, C. Xu, M.E. Rettmann, and J.L. Prince, "Automatic Segmentation Editing for Cortical Surface Reconstruction", Proceedings of SPIE Medical Imaging (SPIE-MI 2001), San Diego, CA, February, 2001.
D. Tosun and J.L. Prince, "A Hemispherical Map for the Human Brain Cortex", Proceedings of SPIE Medical Imaging (SPIE-MI 2001), San Diego, CA, February, 2001.

2000

M.E. Rettmann, X. Han, and J.L. Prince, "Watersheds on the Cortical Surface for Automated Sulcal Segmentation", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2000), Hilton Head Island, South Carolina, June 11-12, 2000. (doi)
M.E. Rettmann, X. Han, D.L. Pham, and J.L. Prince,, "Geodesics for Sulcal Segmentation and Depth Measurements", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
D. Yu, C. Xu, and J.L. Prince, "A New Surface Editing Tool for Generating Truth Models of the Human Cortical Surface", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
C. Xu, X. Han, and J.L. Prince, "Improving Cortical Surface Reconstruction Accuracy Using an Anatomically Consistent Gray Matter Representation", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
X. Han, M.E. Rettmann, C. Xu, and J.L. Prince, "Morphology on Triangle Meshes Using Geodesic Distance", Conference on Information Sciences and Systems (CISS 2000), Princeton, New Jersey, March 15-17, 2000.
D.N. Yu, C. Xu, M.E. Rettmann, D.L. Pham, and J.L. Prince, "Quantitative Validation of a Deformable Cortical Surface Model", Proceedings of SPIE Medical Imaging (SPIE-MI 2000), San Diego, CA, February, 2000. (doi)
D. Yu, "Quantitative Validation of a Cortical Surface Reconstruction Method", MSE thesis, The Johns Hopkins University, January, 2000.

1999

M.E. Rettmann, C. Xu, D.L. Pham, and J.L. Prince, "Automated Segmentation of Sulcal Regions", The Second International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI 1999), Cambridge, UK, September 19-22, 1999.
C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince, "Reconstruction of the Human Cerebral Cortex from Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 18(6):467-480, June 1999. (doi) (PubMed)
M.E. Etemad, C. Xu, D.L. Pham, D. Yu, and J.L. Prince, "On Automated Segmentation of Buried Gyri", Fifth International Conference on Functional Mapping of the Human Brain (HBM 1999), Dusseldorf, Germany, June 22-26, 1999.

1998

C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince, "Reconstruction of the Central Layer of the Human Cerebral Cortex from MR images", The First International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI 1998), Cambridge, Massachusetts, October 11-13, 1998.
C. Xu, M.E. Etemad, D. Yu, D.L. Pham, and J.L. Prince, "A Spherical Map for Cortical Geometry", Fourth International Conference on Functional Mapping of the Human Brain (HBM 1998), Montreal, Canada, June 7-12, 1998.
A.F. Goldszal, C. Davatzikos, D.L. Pham, M.X.H. Yan, R.N. Bryan, and S.M. Resnick, "An Image Processing System for Qualitative and Quantitative Volumetric Analysis of Brain Images", Journal of Computer Assisted Tomography, 22(5):827-837, 1998.

1997

D.L. Pham, J.L. Prince, A.P. Dagher, and C. Xu, "An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging", International Journal of Pattern Recognition and Artificial Intelligence, 11(8):1189-1211, 1997. (doi)
C. Xu, D.L. Pham, and J.L. Prince, "Finding the Brain Cortex Using Fuzzy Segmentation, Isosurfaces, and Deformable Surface Models", 15th Conference on Information Processing in Medical Imaging (IPMI 1997), Poultney, Vermont, June 9-13, 1997.

1996

D.L. Pham, J.L. Prince, and A.P. Dagher, "Estimation of Joint Probability Density Functions in Magnetic Resonance Imaging", Proceedings of The Ninth Workshop on Image and Multidimensional Signal Processing (IMDSP), pp. 148-149, 1996.
C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan, "Morphological analysis of brain structures using spatial normalization", Proc. Visualization in Biomedical Computing, Hamburg, Germany, September 22-25, 1996.
C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan, "A Computerized Approach for Morphological Analysis of the Corpus Callosum", Journal of Computer Assisted Tomography, 20(1):88-97, January, 1996.

1995

C.A. Davatzikos and J.L. Prince, "An Active Contour Model for Mapping the Cortex", IEEE Trans. on Medical Imaging, 14(1):65-80, March 1995. (doi)

1994

C.A. Davatzikos and J.L. Prince, "Brain Image Registration Based on Curve Mapping", Proceedings of the IEEE Workshop on Biomedical Image Analysis, Seattle, WA, pp. 245-254, June 24-25, 1994. (doi)

1993

C.A. Davatzikos, J.L. Prince, and R.N. Bryan, "Brain Image Registration Based on Cortical Contour Mapping", Proceedings of the IEEE 1993 Nuclear Science Symposium and Medical Imaging Conference, San Francisco, CA, pp. 1823-1826, October 31 - November 6, 1993.

1992

H.W. Muller-Gartner, J.M. Links, J.L. Prince, R.N. Bryan, E.R. McVeigh, J.P. Leal, C. Davatzikos, and J.J. Frost, "Measurement of Tracer Concentration in Brain Gray Matter Using Positron Emission Tomography: MRI-Based Correction for Partial Volume Effects", J. Cerebral Blood Flow and Metabolism, 12(4):571-583, 1992. (PubMed)