JohnCV

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John Bogovic

Education

  • Doctor of Philosophy, Electrical Engineering – Johns Hopkins University, Baltimore MD, February 2013
  • Master of Science in Engineering – Johns Hopkins University, Baltimore MD, January 2008
  • Bachelor of Science (Magna Cum Laude) - Washington University in St Louis, MO, May 2006


Awards and Honors

  • Student Travel Award, International Society for Magnetic Resonance in Medicine (2010)
  • David Levy Award for Design Excellence, 2006
  • Eta Kappa Nu Honor Society- 2006
  • Tau Beta Pi Honor Society - 2005
  • Antoinette Frances Dames Award, 2004

Grants and Fellowships

  • Howard and Jacqueline Chertkof Endowed Fellowship for Engineering Graduate Students, Johns Hopkins, 2006

Journal Publications

  1. J.A. Bogovic, J.L. Prince, P-L Bazin, A Multiple Object Geometric Deformable Model for Image Segmentation. CVIU (accepted)
  2. J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, S.H. Ying, Approaching Expert Results Using a Hierarchical Cerebellum Parcellation Protocol for Multiple Inexpert Human Raters, Neuroimage (in Press) 2012.
  3. B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P-L Bazin, S. Resnick, J.L.Prince. "System for Integrated Neuroimaging Analysis and Processing of Structure" Neuroinformatics (in Press)
  4. B.A. Landman, A.J. Asman, A.G. Scoggins, J.A. Bogovic, F. Xing, J.L. Prince, Robust statistical fusion of image labels, IEEE TMI, 31(2):512-22 2012
  5. B.A. Landman, A.J. Asman, A.G. Scoggins, J.A. Bogovic, J.A. Stein, J.L. Prince, Foibles, follies, and fusion: Web-based collaboration for medical image labeling, Neuroimage. 59(1):530-9, 2012.
  6. B.A. Landman, J.A. Bogovic, H. Wan, F.E.Z. ElShahaby, P-L Bazin, and J.L. Prince. "Resolution of Crossing Fibers with Constrained Compressed Sensing using Diffusion Tensor MRI," Neuroimage. 59(3), 2175–86, 2012.
  7. P-L Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, D.L. Pham. "Direct segmentation of the major white matter tracts in diffusion tensor images." Neuroimage, 58(2):458-68, 2011.
  8. B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A. Lim, J.A. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, P.C. van Zijl. “Multi-parametric neuroimaging reproducibility: a 3-T resource study.” Neuroimage 54(4):2854-66, 2011
  9. B.C Lucas, J.A. Bogovic, A. Carass, P-L Bazin, J.L. Prince, D.L. Pham, B.A. Landman "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software." Neuroinformatics, 8(1):19, 2010.

Magazines

  1. W.R. Gray, J.A. Bogovic, J.T. Vogelstein, B.A. Landman, J.L. Prince, R.J. Vogelstein, "Magnetic Resonance Connectome Automated Pipeline." IEEE Pulse, Vol. 3 No. 2, 2012.

Conference Publications

  1. J.A. Bogovic, P-L Bazin, S.H. Ying, J.L. Prince, ``Automated Segmentation of the Cerebellar Lobules using Boundary Specific Classification and Evolution. in Proc. IPMI(to appear).
  2. C. Ye, J.A. Bogovic, S.H. Ying, J.L. Prince. “Parcellation of the Thalamus Using Diffusion Tensor Images and a Multi-object Geometric Deformable Model” Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013.
  3. Z. Yang, J.A. Bogovic, A. Carass, M. Ye, P.C. Searson, J.L. Prince. “Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model (MGDM)” Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013.
  4. C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, S.H. Ying. “Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images” Proceedings of ISBI, Barcelona, Spain 2012
  5. M. Chen, J.A. Bogovic, P.L. Bazin, J.L. Prince. “Distance Transforms in Multi Channel MR Image Registration” Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12–17, 2011.
  6. J.A. Bogovic, P.L. Bazin, J.L. Prince. “Topology-preserving STAPLE” Proceedings of Mathematical Methods in Biomedical Image Analysis (MMBIA 2010), San Francisco, CA, June 13-18, 2010. (Oral Presentation)
  7. J.A. Bogovic, B.A. Landman, P.L. Bazin, J.L. Prince. “Statistical Recombination of Rater Labels on Surfaces” Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 13-18, 2010.
  8. B.A. Landman, J.A. Bogovic, J.L. Prince. "Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data" Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 13-18, 2010.
  9. X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince. "A novel contrast for DTI visualization for thalamus delineation" Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 13-18, 2010.
  10. B.A. Landman, H. Wan, J.A. Bogovic, P-L Bazin, J.L. Prince. "Resolution of Crossing Fibers with Constrained Compressed Sensing using Traditional Diffusion Tensor MRI" Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 13-18, 2010.
  11. P-L Bazin, J. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham, "Efficient MRF Segmentation of DTI White Matter Tracts using an Overlapping Fiber Model", Proceedings of the MICCAI workshop of Diffusion Modeling and the Fiber Cup, 2009.
  12. P-L Bazin, J. Bogovic, D.S. Reich, J.L. Prince, D.L. Pham, "Belief Propagation Based Segmentation of White Matter Tracts in DTI", Proceedings of MICCAI, 2009.
  13. J. A. Bogovic, A. Carass, J. Wan, B. A. Landman, and J. L. Prince. “Automatically identifying white matter tracts using cortical labels,” In Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging, Paris, France, May 2008
  14. X. Fan, P.L. Bazin, J.A. Bogovic, Y. Bai, and J.L. Prince "A Multiple Deformable Model Framework for Homeomorphic 3D Medical Image Segmentation," Mathematical Methods in Biomedical Image Analysis, Anchorage, Alaska, June 2008
  15. B. Landman, J. Bogovic, J. Prince: Compressed sensing of multiple intra-voxel orientations with traditional dti. In: Proceedings of the MICCAI workshop on Computational Diffusion MRI, New York (2008)

Published Abstracts

  1. J.A. Bogovic, P-L. Bazin, J.L. Prince, and S.H. Ying, "Toward an Automatic Cerebellar Parcellation Method Robust to Anatomical Variation", Organization for Human Brain Mapping, Quebec City, Canada, June 2011
  2. J.T. Vogelstein, W. Gray, J.A. Bogovic, S. Resnick, Jerry L. Prince, C.E. Priebe, R.J. Vogelstein, "Connectome Classification: Statistical Graph Theoretic Methods for Analysis of MR-Connectome Data", Organization for Human Brain Mapping, Quebec City, Canada, June 2011
  3. J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying, "Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
  4. C. Zhao, D. Chen, A. Carass, M. Chen, J.A. Bogovic, J.L. Prince "A Java Application for Manually Editing Cortical Labels", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
  5. C. Zhao, A. Carass, M. Chen, J.A. Bogovic, D. Chen , J.L. Prince "A Protocol for Manual Correction of Gyral Based Cortical Labels", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
  6. J. Vogelstein, J.A. Bogovic, A.Carass, W.Gray, J.L. Prince, B.A. Landman, D.L. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein, "Graph-Theoretical Methods for Statistical Inference on MR Connectome Data", Organization for Human Brain Mapping, Barcelona, Spain, June 2010
  7. N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, D.L. Pham, "Cortical thinning in Multiple Sclerosis", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  8. S.H. Ying , G. Newman, Y.-S. Choi, A. Presacco, N. Shiee, J. Bogovic, M. V. Kothare, H.-N, Kim, P.-L. Bazin, A. Blitz, J. L. Prince, D. L. Pham, N. V. Thakor, "Feasibility of EEG-BCI in cerebellar ataxia," 17th Annual World Congress for Brain Mapping and Image Guided Therapy, Bethesda, MD, May 24-27, 2010.
  9. J.A. Bogovic, M. Chen, A. Carass, P-L Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman, "Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010. (Oral Presentation)
  10. B.A. Landman, H. Wan, J.A. Bogovic, P-L Bazin and J.L. Prince, "Accelerated Compressed Sensing of Diffusion-Inferred Intra-Voxel Structure through Adaptive Refinement", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
  11. B.A. Landman, H. Wan, J.A. Bogovic, P.C. van Zijl, P-L Bazin and J.L. Prince, "In the Pursuit of Intra-Voxel Fiber Orientations: Comparison of Compressed Sensing DTI and Q-Ball MRI", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
  12. J.A. Bogovic, R. Nicoletto, B.A. Landman, J.L. Prince, S.H. Ying. “Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes”, Organization for Human Brain Mapping, San Francisco, California, June 2009
  13. J. Wan, A. Carass, J.A. Bogovic, R. Nicoletto, J.L. Prince “Automated Cerebellum Extraction From Whole Head 3D MR Images”, Organization for Human Brain Mapping, San Francisco, California, June 2009
  14. B.A. Landman, B. Lucas, J.A. Bogovic, A. Carass, J.L. Prince “A Rapid Prototyping Environment for NeuroImaging in Java”, Organization for Human Brain Mapping, San Francisco, California, June 2009
  15. B.A. Landman, J.A. Bogovic, J.L. Prince "Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets" International Society for Magnetic Resonance in Medicine, Honolulu, Hawaii, April 2009
  16. J.A. Bogovic, A. Carass, J. Wan, B.A. Landman, J.L. Prince “DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity”, Organization for Human Brain Mapping, Melbourne, Australia, June 2008

Teaching

  • Medical Image Analysis, TA under Prof Jerry L. Prince, Spring 2011
  • Feedback Control in Biological Signaling Pathways, TA under Prof. Pablo Iglesias, Fall 2007
  • Part-time Drumset Instructor, Winter-Spring 2007

Mentoring

  • Caleb Fan, "Shape Analysis of Cerebellar Lobules", Summer 2010
  • Delineation of Cerebellar Lobules
    • Wade Mayes; Summer 2007
    • Ariel Zhao, Karin Hwang; Winter 2008
    • Rachel Nicoletto, Charles Ang, Steve Wang; Summer 2008
    • Lauren Drake, Javaneh Jabbari; Spring, Summer 2009
    • Lorre Atlan; Ami Kumordzie; Fall 2009, Spring 2010
  • James Barger, Manual Parcellation of the Thalamic Nuclei, Fall 2009, Spring 2010
  • Jade Velasquez, "Thalamus Parcellation Machine", Summer 2008
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