Publications/2023

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2023

  • S. Wei, Y. Liu, Z. Bian, Y. Wang, L. Zuo, P.A. Calabresi, S. Saidha, J.L. Prince, and A. Carass, "Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation", 10th Ophthalmic Medical Image Analysis Workshop (OMIA 2023) in conjunction with the 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Vancouver, Canada, October 8–12, 2023. DOI: "Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation"
  • S.W. Remedios, S. Han, L. Zuo, A. Carass, D.L. Pham, J.L. Prince, and B.E. Dewey, "Self-Supervised Super-Resolution for Slice Gap MRI", Simulation and Synthesis in Medical Imaging (SASHIMI 2023) in conjunction with the 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Vancouver, Canada, October 8–12, 2023.
  • Z. Bian, S. Wen, Y. Liu, J. Chen, J. Yu, J. Zhuo, F. Xing, J. Woo, A. Carass, and J.L. Prince, "MomentaMorph: Unsupervised Spatial-Temporal Registration with Momenta, Shooting, and Correction", MICCAI Workshop on Time-Series Data Analytics and Learning (MTSAIL 2023) in conjunction with the 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Vancouver, Canada, October 8–12, 2023. arXiv: "MomentaMorph: Unsupervised Spatial-Temporal Registration with Momenta, Shooting, and Correction"
  • L. Zuo, Y. Liu, Y. Xue, B.E. Dewey, S.W. Remedios, S.P. Hays, M. Bilgel, E.M. Mowry, S.D. Newsome, P.A. Calabresi, S.M. Resnick, J.L. Prince, and A. Carass, "HACA3: A unified approach for multi-site MR image harmonization", Computerized Medical Imaging and Graphics, 109:102285, 2023. DOI: "HACA3: A unified approach for multi-site MR image harmonization" arXiv: "HACA3: A unified approach for multi-site MR image harmonization"   HACA3 Code
  • R.J. Okamoto, J.D. Escarcega, A. Alshareef, A. Carass, J.L. Prince, C.L. Johnson, and P.V. Bayly, "Effect Of Direction And Frequency Of Skull Motion On Mechanical Vulnerability Of The Human Brain", J Biomech Eng., 145(11):111005, 2023. DOI: "Effect Of Direction And Frequency Of Skull Motion On Mechanical Vulnerability Of The Human Brain"
  • S.P. Hays, L. Zuo, Y. Wang, M.G. Luciano, A. Carass, and J.L. Prince, "Exploring the Optimal Operating MR Contrast for Brain Ventricle Parcellation", Medical Imaging with Deep Learning (MIDL 2023), Nashville, TN, July 10–12, 2023. (OpenReview)
  • Z. Bian, F. Xing, J. Yu, M. Shao, Y. Liu, A. Carass, J. Zhuo, J. Woo, and J.L. Prince, "DRIMET: Deep Registration-based 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue", Medical Imaging with Deep Learning (MIDL 2023), Nashville, TN, July 10–12, 2023. arXiv: "DRIMET: Deep Registration-based 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue" (OpenReview) DRIMET: Deep Registration-based 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue
  • S. Wei, Y. Liu, L. Zuo, S. Saidha, P.A. Calabresi, J.L. Prince, and A. Carass, "Retinal layer thickness comparison between the UK BioBank and people with multiple sclerosis", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
  • Y. Xue, B.E. Dewey, L. Zuo, S.W. Remedios, S.P. Hays, S.D. Cassard, C. Koch, A. Fishman, A. Carass, P.A. Calabresi, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Synthesizing Missing MRI Sequences to Improve Processing Images in Multiple Sclerosis", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
  • L. Zuo, S.P. Hays, B.E. Dewey, S.W. Remedios, Y. Xue, S.D. Cassard, C. Koch, A. Fishman, A. Carass, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Inconsistent MR acquisition in longitudinal volumetric analysis: Impacts and solutions", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023. Inconsistent MR acquisition in longitudinal volumetric analysis: Impacts and solutions
  • S.P. Hays, L. Zuo, B.E. Dewey, S.W. Remedios, Y. Xue, S.D. Cassard, C. Koch, A. Fishman, A. Carass, P.A. Calabresi, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Quantifying contrast differences among MR images used in clinical studies", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
  • B.E. Dewey, A. Fishman, S.D. Cassard, L. Zuo, S.W. Remedios, Y. Xue, C. Koch, A. Carass, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Measuring MRIs Differences Between Sites: Design of a Traveling Subject Study in MS", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
  • B.E. Dewey, L. Zuo, S.W. Remedios, Y. Xue, S.D. Cassard, C. Koch, A. Fishman, A. Carass, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Compliance with CMSC MRI Guidelines in a Multi-Center, Pragmatic, Randomized Clinical Trial: Improvements over Time", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
  • S.W. Remedios, B.E. Dewey, Y. Xue, L. Zuo, S.D. Cassard, C. Koch, A. Fishman, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Cautions in Anisotropy: Thick Slices and Slice Gaps in 2D MR Acquisition Tarnish Volumetrics", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
  • S.P. Hays, L. Zuo, Y. Wang, M.G. Luciano, A. Carass, and J.L. Prince, "Optimal operating MR contrast for brain ventricle parcellation", 20th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18–21, 2023. arXiv: "Optimal operating MR contrast for brain ventricle parcellation"
  • Y. Wang, A. Feng, Y. Xue, L. Zuo, A.M. Blitz, M.G. Luciano, A. Carass, and J.L. Prince, "Automated ventricle parcellation and Evan’s ratio computation in pre- and post-surgical ventriculomegaly", 20th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18–21, 2023. arXiv: "Automated ventricle parcellation and Evan’s ratio computation in pre- and post-surgical ventriculomegaly"
  • P. Duan, Y. Xue, S. Han, L. Zuo, A. Carass, C. Bernhard, P.A. Calabresi, S.M. Resnick, J.S. Duncan, and J.L. Prince, "Rapid brain meninges surface reconstruction with layer topology guarantee", 20th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18–21, 2023. arXiv: "Rapid brain meninges surface reconstruction with layer topology guarantee"
  • A. Feng, Y. Xue, Y. Wang, C. Yan, Z. Bian, M. Shao, J. Zhuo, R.P. Gullapalli, A. Carass, and J.L. Prince, "Label propagation via random walk for training robust thalamus nuclei parcellation model from noisy annotations", 20th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18–21, 2023. arXiv: "Label propagation via random walk for training robust thalamus nuclei parcellation model from noisy annotations"
  • Y. He, A. Carass, Y. Liu, P.A. Calabresi, S. Saidha, and J.L. Prince, "Longitudinal deep network for consistent OCT layer segmentation", Biomed. Opt. Express, 14(5):1874-1893, 2023. DOI: "Longitudinal deep network for consistent OCT layer segmentation" (PubMed)
  • M. Shao, F. Xing, A. Carass, X. Liang, J. Zhuo, M. Stone, J. Woo, and J.L. Prince, "Analysis of Tongue Muscle Strain During Speech From Multimodal Magnetic Resonance Imaging", Journal of Speech, Language, and Hearing Research, 66(2):513-526, 2023. DOI: "Analysis of Tongue Muscle Strain During Speech From Multimodal Magnetic Resonance Imaging" (PubMed)
  • S. Han, S.W. Remedios, M. Schär, A. Carass, and J.L. Prince, "ESPRESO: An algorithm to estimate the slice profile of a single magnetic resonance image", Mag. Reson. Im., 98:1-9, 2023. DOI: "ESPRESO: An algorithm to estimate the slice profile of a single magnetic resonance image" (PubMed)
  • Y. Xue, L. Zuo, S.W. Remedios, B.E. Dewey, P. Duan, Y. Liu, R. Zhang, S. Newsome, E. Mowry, A. Carass, and J.L. Prince, "Unsupervised quality assurance for brain MR Image rigid registration using latent shape representation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "Unsupervised quality assurance for brain MR Image rigid registration using latent shape representation"
  • J. Yu, M. Shao, Z. Bian, X. Liang, J. Zhuo, M. Stone, and J.L. Prince, "New starting point registration method for tagged MRI tongue motion estimation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "New starting point registration method for tagged MRI tongue motion estimation"
  • P. Tohidi, S. Han, L. Zuo, J. Zhuo, S.R. Roys, A. Carass, R.P. Gullapalli, and J.L. Prince, "Joint synthesis of WMn MPRAGE and parameter maps using deep learning and an imaging equation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "Joint synthesis of WMn MPRAGE and parameter maps using deep learning and an imaging equation"
  • Y. Wang, A. Feng, Y. Xue, M. Shao, A. Blitz, M. Luciano, A. Carass, and J.L. Prince, "Investigation of probability maps in deep-learning-based brain ventricle parcellation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "Investigation of probability maps in deep-learning-based brain ventricle parcellation"
  • C. Yan, M. Shao, Z. Bian, A. Feng, Y. Xue, J. Zhuo, R.P. Gullapalli, A. Carass, and J.L. Prince, "Segmenting thalamic nuclei from manifold projections of multi-contrast MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "Segmenting thalamic nuclei from manifold projections of multi-contrast MRI" arXiv: "Segmenting thalamic nuclei from manifold projections of multi-contrast MRI"
  • S.W. Remedios, B.E. Dewey, A. Carass, D.L. Pham, and J.L. Prince, "A deep generative prior for high-resolution isotropic MR head slices", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "A deep generative prior for high-resolution isotropic MR head slices"
  • Z. Bian, M. Shao, J. Zhuo, R. Gullapalli, A. Carass, and J.L. Prince, "FastCod: Fast Brain Connectivity in Diffusion Imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "FastCod: Fast Brain Connectivity in Diffusion Imaging" arXiv: "FastCod: Fast Brain Connectivity in Diffusion Imaging"
  • Z. Bian, M. Shao, A. Carass, and J.L. Prince, "DrDisco: Deep Registration for Distortion Correction of Diffusion MRI with single phase-encoding", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "DrDisco: Deep Registration for Distortion Correction of Diffusion MRI with single phase-encoding" arXiv: "DrDisco: Deep Registration for Distortion Correction of Diffusion MRI with single phase-encoding"
  • X. Liu, F. Xing, J.L. Prince, M. Stone, G. El Fakhri, and J. Woo, "Synthesizing audio from tongue motion during speech using tagged MRI via transformer", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "Synthesizing audio from tongue motion during speech using tagged MRI via transformer"
  • L. Zuo, Y. Xue, B.E. Dewey, Y. Liu, J.L. Prince, and A. Carass, "A latent space for unsupervised MR image quality control via artifact assessment", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "A latent space for unsupervised MR image quality control via artifact assessment" arXiv: "A latent space for unsupervised MR image quality control via artifact assessment"
  • A. Hong, A. Carass, J.L. Prince, and A. Alshareef, "Investigating the effect of cerebral atrophy on brain deformation using subject-specific models", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. DOI: "Investigating the effect of cerebral atrophy on brain deformation using subject-specific models"
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