Publications

<meta name="title" content="Publications"/>

PUBLICATIONS

Brain Mapping

• J. Bogovic, R. Nicoletto, B. Landman, J.L. Prince, and S. Ying, "Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009.
• J. Wan, A. Carass, S.M. Resnick, and J.L. Prince, "Characterizing Regional Gray Matter Thickness Trends in Normal Aging", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
• J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince, "DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
• J. Wan, A. Carass, S.M. Resnick, and J.L. Prince, "Automated Reliable Labeling of the Cortical Surface", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi)
• J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince, "Automated White Matter Tract Parcellation from DTI Fiber Tractography", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi)
• S. Roy, H. Agarwal, A. Carass, Y. Bai, D.L. Pham, and J.L. Prince, "Fuzzy C-Means with Variable Compactness", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi)
• A. Carass, M.B. Wheeler, J. Cuzzocre, P.-L. Bazin, S.S. Bassett, and J.L. Prince, "A Joint Registration and Segmentation Approach to Skull Stripping", Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. (doi)
• Hao Huang, Aaron Carass, Jerry L. Prince, Bennett Landman, Peter C. M. van Zijl, and Susumu Mori, "Cortico-cortical Connectivity Revealed by DTI-based Tractography", ISMRM, Seattle, WA, May, 2006.
• Prasanna Anbazhagan, Aaron Carass, P. L. Bazin, and Jerry L. Prince, "Automatic Estimation of Mid Sagittal Plane and AC-PC alignment based on Nonrigid Registration", Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Arlington, VA, April 6-9, 2006. (doi)
• Y. Bai and J. L. Prince, "Octree-based Topology-preserving Isosurface Simplification", MMBIA, 2006.
• Y. Bai, X. Han, D. Pham, and J. L. Prince, "Super-resolved multi-channel fuzzy segmentation of MR brain images", SPIE Medical Imaging, San Diego, CA, 16 February, 2005.
• D. Tosun, M.E. Rettmann, D. Q. Naiman, S. M. Resnick, M. A. Kraut, and J. L. Prince, "Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study", Proceedings of Medical Image Computing and Computer Assisted Interventions (MICCAI), St. Malo, France, October, 2004.
• X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J. L. Prince, "CRUISE: Cortical Reconstruction Using Implicit Surface Evolution", NeuroImage vol. 23, pp. 997--1012, 2004.
• D. Pham and J. L. Prince, "Robust Unsupervised Tissue Classification in MR Images", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004.
• X. Tao, J.L. Prince, and C. Davatzikos, "An Automated Method for Finding Curves of Sulcal Fundi on the Human Cortical Surface", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004.
• Y. Bai, X. Han, and J. L. Prince, "Super-resolution Reconstruction of MR Brain Images", Proc. of Princeton Conf. on Information Sciences and Systems, March 17-19, 2004.
• D. Tosun, M. E. Rettmann, X. Han, X. Tao, C. Xu, S. M. Resnick, D. Pham, and J. L. Prince, "Cortical Surface Segmentation and Mapping", NeuroImage vol. 23, pp. S108--S118, 2004.
• D. Tosun, M. E. Rettmann, and J. L. Prince, "Mapping Techniques for Aligning Sulci Across Multiple Brains", Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Montreal, Canada, November 14-18, 2003.
• D. Tosun and J. L. Prince, "Mapping Techniques for Aligning Sulci Across Multiple Brains", Medical Imaging Analysis vol. 8, pp. 295--309, 2004.
• X. Han, C. Xu, and J. L. Prince, "A topology preserving level set method for geometric deformable models", IEEE Trans. Pattern Analysis Machine Intelligence vol. 25, no. 6, pp. 755--768, June 2003.
• X. Han, C. Xu, and J. L. Prince, "Topology-Preserving Geometric Deformable Models and Brain Reconstruction", Geometric Level Set Methods in Imaging, Vision, and Graphics, Edited by Stanley Osher and Nikos Paragios, Springer-Verlag, 2003.
• K. Behnke, M. Rettmann, D. Pham, D. Shen, S. Resnick, C. Davatzikos, and J. L. Prince, "Automatic classification of sulcal regions of the human brain cortex using pattern recognition", Proc. SPIE's Medical Imaging, San Diego, CA, February 15-20, 2003.
• M.E. Rettmann, X. Tao, J. L. Prince, "Assisted labeling techniques for the human brain cortex", Proc. SPIE Medical Imaging 2002, vol. 4684, pp. 179-190, San Diego, CA, Feb. 23-28, 2002.
• D.L. Pham, X. Han, M.E. Rettmann, C. Xu, D. Tosun, S.M. Resnick, J. L. Prince, "New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm", Proc. SPIE Medical Imaging 2002, vol. 4684, pp. 191-200, San Diego, CA, Feb. 23-28, 2002.
• X. Han, C. Xu, and J. L. Prince, "A Topology Preserving Deformable Model Using Level Sets", IEEE Computer Society Conference on Computer Vision and Pattern Recognition vol.2, pp.765-770, Kauai, Hawai, 8-14 December 2001.
• X. Han, C. Xu, D. Tosun and J.L. Prince, "Cortical Surface Reconstruction Using a Topology Preserving Geometric Deformable Model", 5th IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2001), Kauai, Hawaii, December, 2001.
• M.E. Rettmann, X. Han and J.L. Prince, "Automated Parcellation of the Cortical Surface for Computation of Regional Gyrification Indices", Seventh International Conference on Functional Mapping of the Human Brain (HBM 2001), Brighton, U.K., June 10-14, 2001.
• D. Tosun, M.E. Rettmann, X. Tao, X. Han, C. Xu, J.L. Prince, "Calculation of Human Cerebral Cortical Thickness on Opposing Sulcal Banks", Seventh International Conference on Functional Mapping of the Human Brain (HBM 2001), Brighton, U.K., June 10-14, 2001.
• X. Tao, X. Han, M.E. Rettmann, J.L. Prince and C. Davatzikos, "Statistical Study on Cortical Sulci of Human Brains", Proceedings of the XVIIth International Conference on Information Processing in Medical Imaging (IPMI), June, 2001.
• X. Han, C. Xu, M.E. Rettmann and J.L. Prince, "Automatic Segmentation Editing for Cortical Surface Reconstruction", Proceedings of SPIE Medical Imaging, February, 2001.
• D. Tosun and J.L. Prince, "A Hemispherical Map for the Human Brain Cortex", Proceedings of SPIE Medical Imaging, February, 2001.
• M.E. Rettmann, X. Han, and J.L. Prince, "Watersheds on the Cortical Surface for Automated Sulcal Segmentation", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, pages 20-27, June, 2000.
• M.E. Rettmann, X. Han, D.L. Pham and J.L. Prince,, "Geodesics for Sulcal Segmentation and Depth Measurements", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
• D. Yu, C. Xu, J.L. Prince, "A New Surface Editing Tool for Generating Truth Models of the Human Cortical Surface", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
• C. Xu, X. Han, J.L. Prince, "Improving Cortical Surface Reconstruction Accuracy Using an Anatomically Consistent Gray Matter Representation", NeuroImage Human Brain Mapping 2000 Meeting, Poster N. 581, NeuroImage Vol. 11, No. 5, May, 2000.
• X. Han, M.E. Rettmann, C. Xu, and J.L. Prince, "Morphology on Triangle Meshes Using Geodesic Distance", Conf. on Info. Sci.. Sys., Princeton University, March 15-17, 2000..
• D. Yu, C. Xu, M.E. Rettmann, D.L. Pham and J.L. Prince, "Quantitative Validation of a Deformable Cortical Surface Model", SPIE International Symposium on Medical Imaging, February, 2000.
• D. Yu, "Quantitative Validation of a Cortical Surface Reconstruction Method", MSE thesis, The Johns Hopkins University, January, 2000.
• M.E. Rettmann, C. Xu, D.L. Pham and J.L. Prince, "Automated Segmentation of Sulcal Regions", 2nd International Conference on Medical Image Computing and Computer-Assisted Interventions (MICCAI), pgs 158-167, Springer-Verlag, September, 1999.
• C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince, "Reconstruction of the Human Cerebral Cortex from Magnetic Resonance Images", IEEE Transactions on Medical Imaging, 18(6), pp. 467-480, June,1999.
• C. Xu, D. Pham, M.E. Rettmann, D. Yu, and J.L. Prince, "Reconstruction of the Human Cerebral Cortex from Magnetic Resonance Images", IEEE Transactions in Medical Imaging, 18(6), June, 1999.
• M.E. Etemad, C. Xu, D.L. Pham, D. Yu, and J.L. Prince, "On Automated Segmentation of Buried Gyri", Fifth International Conference on Functional Mapping of the Human Brain (HBM 1999), Dusseldorf, Germany, June 22-26, 1999.
• C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince, "Reconstruction of the Central Layer of the Human Cerebral Cortex from MR images", Proc. of the First International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI'98), pp. 482-488, October, 1998.
• C. Xu, M.E. Etemad, D. Yu, D.L. Pham, and J.L. Prince, "A Spherical Map for Cortical Geometry", 4th International Conference on Functional Mapping of the Human Brain, June, 1998.
• A.F. Goldszal, C. Davatzikos, D.L. Pham, M.X.H. Yan, R.N. Bryan and S.M. Resnick, "An Image Processing System for Qualitative and Quantitative Volumetric Analysis of Brain Images", Journal of Computer Assisted Tomography, 22(5):827-837, 1998.
• D.L. Pham, J.L. Prince, A.P. Dagher, and C. Xu, "An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging", International Journal of Pattern Recognition and Artificial Intelligence, 11(8):1189--1211, 1997.
• C. Xu, D.L. Pham, and J.L. Prince, "Finding the Brain Cortex Using Fuzzy Segmentation, Isosurfaces, and Deformable Surface Models", Proceedings of the XVth International Conference on Information Processing in Medical Imaging (IPMI'97), pp. 399-404, June,1997.
• D.L. Pham, J.L. Prince, and A.P. Dagher, "Estimation of Joint Probability Density Functions in Magnetic Resonance Imaging", Proceedings of The Ninth Workshop on Image and Multidimensional Signal Processing (IMDSP), pp. 148-149, 1996.
• C. A. Davatzikos, M. Vaillant, S. Resnick, J. L. Prince, S. Letovsky, and R. N. Bryan, "Morphological analysis of brain structures using spatial normalization", Proc. Visualization in Biomedical Computing, Hamburg, Germany, September 22-25, 1996.
• C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan, "A Computerized Approach for Morphological Analysis of the Corpus Callosum", Journal of Computer Assisted Tomography, 20(1):88-97, January, 1996.
• D.L. Pham, J.L. Prince, A.P. Dagher, and C. Xu, "An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging", International Journal of Pattern Recognition and Artificial Intelligence, August 1996.
• C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan, "A Computerized Approach for Morphological Analysis of the Corpus Callosum", Journal of Computer Assisted Tomography, 20(1):88-97, January, 1996.
• C.A. Davatzikos and J.L. Prince, "An Active Contour Model for Mapping the Cortex", IEEE Transactions on Medical Imaging, 14(1):65-80, March, 1995.
• C.A. Davatzikos and J.L. Prince, "Brain Image Registration Based on Curve Mapping", Proceedings of the IEEE Workshop on Biomedical Image Analysis, pp. 245-254, Seattle, WA, June 24-25, 1994.
• C.A. Davatzikos, J.L. Prince, and R.N. Bryan, "Brain Image Registration Based on Cortical Contour Mapping", Proceedings of the IEEE 1993 Nuclear Science Symposium and Medical Imaging Conference, pp. 1823-1826, San Francisco, CA, November 4-6, 1993.
• H.W. Muller-Gartner, J.M. Links, J.L. Prince, R.N. Bryan, E.R. McVeigh, J.P.Leal, C. Davatzikos and J.J. Frost, "Measurement of Tracer Concentration in Brain Gray Matter Using Positron Emission Tomography: MRI-Based Correction for Partial Volume Effects", J. Cerebral Blood Flow and Metabolism, 12(4):571-583, 1992.

Cardiac Motion Estimation

• L. Pan, J. L. Prince, J. A. C. Lima, and N. F. Osman, "Fast tracking of cardiac motion using 3D-HARP", IEEE Trans. Biomedical Engineering, 52(8):1425-1435, August 2005.
• N. F. Osman and J. L. Prince, "Regenerating MR tagged images using harmonic phase (HARP) methods", IEEE Trans. Biomedical Engineering, 51(8):1428-1433, August 2004.
• V. Parthasarathy, M. Ness-Aiver, and J. L. Prince, "Dynamic range of harmonic phase magnetic resonance imaging (HARP-MRI)", IEEE International Symposium on Biomedical Imaging (ISBI 2004), 15-18 April, 2004.
• S. Sampath and J. L. Prince, "Imaging the Evolution of Three-dimensional myocardial strains using a Fast MR Imaging Technique", IEEE International Symposium on Biomedical Imaging (ISBI 2004), 15-18 April, 2004.
• L. Pan, J. L. Prince, J. A. C. Lima, and N. F. Osman, "Validation of 3D-HARmonic Phase (3D-HARP) for Cardiac Motion Estimation", Proc Intl Soc Magn Res Med (ISMRM), 2004.
• V. Parthasarathy and J. L. Prince, "Artifact Reduction in HARP Strain Maps", Proc Intl Soc Magn Res Med (ISMRM), 2004.
• S. Sampath and J. L. Prince, "3D Tracking of Cardiac Material Points Using a Combined Slice-Following Harmonic Phase (SF-HARP) Magnetic Resonance Imaging Approach", Proc Intl Soc Magn Res Med (ISMRM), 2004.
• K. Z. Abd-Elmoniem and J. L. Prince, "Algorithms for Real-Time FastHARP Cardiac Function Analysis", Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Montreal, Canada, 14-18 November 2003.
• S. Sampath, J. A. Derbyshire, N. F. Osman, and J. L. Prince, "Real-time imaging of cardiac strain using FastHARP: a comparison between breath-hold and non-breath-hold studies", SCMR 2003, .
• N. F. Osman, S. Sampath, J. A. Derbyshire, M. Stuber, D. Kraitchman, and J. L. Prince, "Quantitative Imaging of Myocardial Function with No Breath-holding Using Fast Strain-Encoded (SENC)", 11^th annual meeting of the International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2003.
• N. F. Osman, J. Garot, B. Gerber, K. Wu, D. Kraitchman, J.A.C. Lima, and J. L. Prince, "Strain Encoded (SENC) Imaging Detects Regional Dysfunction in the Heart without Image Processing", 11^th annual meeting of the International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2003.

Image Processing and Analysis

• X. Han, C. Xu, and J. L. Prince, "A 2D Moving Grid Geometric Deformable Model", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2003), Madison, Wisconsin, June 16-22, 2003.
• W. S. Kerwin and J. L. Prince, "Kriging Filters for Space Time Interpolation", Advances in Imaging and Electron Physics, 124, pg.139-193, November 2002.
• M. NessAiver and J. L. Prince, "Magnitude Image CSPAMM Reconstruction (MICSR) Improves Tag Contrast and Persistence", ESMRMB, Cannes, France, August 22-25 2002.
• J. M. Links and J. L. Prince, "Restoration of Multi-collimator/Multi-head SPECT Data Via the Vector Wiener Filter", SNM 49th Annual Mtg., Los Angeles, California, June 16, 2002.
• A. Yezzi and J. L. Prince, "A PDE Approach for Thickness, Correspondence, and Gridding of Annular Tissues", Proc. Europ. Conf. Comput. Vis. (ECCV), Copenhagen, Denmark, May 2002.
• A. Yezzi and J. L. Prince, "A PDE Approach for Measuring Tissue Thickness", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), Kauai, Hawaii, December 8-14, 2001. (doi)
• D. L. Pham, "Spatial Models for Fuzzy Clustering", Computer Vision and Image Understanding, 84(2): 285-297, 2001.
• C. Xu, A. Yezzi, Jr., and J. L. Prince, "A Summary of Geometric Level-Set Analogues for a General Class of Parametric Active Contour and Surface Models", Proc. of 2001 IEEE Workshop on Variational and Level Set Methods in Computer Vision (VLSM 2001), pg. 104-111, July 2001.
• W.S. Kerwin and J.L. Prince, "On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs", Automatica, 36(9):1381-1383, September 2000.
• C. Tu, T. D. Tran, J. L. Prince, and P. N. Topiwala, "Projection-based block motion estimation for video coding", Proc. SPIE Applications of Digital Image Processing XXIII, San Diego, California, August 2000.
• D. L. Pham and J. L. Prince, "Unsupervised partial volume estimation in single-channel image data", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2000), Hilton Head Island, South Carolina, June 11-12, 2000. (doi)

Image-Guided Interventions

• M. Ayad, J. Lee, N. Kuo, G. Fichtinger, J. L. Prince, "Prostate Brachytherapy Seed Localization Using a Mobile C-Arm without Tracking: A Phantom Study", submitted to Medical Image Computing and Computer Assisted Intervention (MICCAI), London, UK, Sep. 2009.
• N. Kuo, J. Lee, C. Tempany, M. Stuber, J. L. Prince, "Positive contrast visualization of prostate brachytherapy seeds using inversion-recovery with ON-resonant water supression (IRON)", submitted to Medical Image Computing and Computer Assisted Intervention (MICCAI), London, UK, Sep. 2009.
• J. Lee, C. Labat, D. Y. Song, G. Fichtinger, J. L. Prince, "Optimal matching for prostate brachytherapy seed localization with dimension reduction", submitted to Medical Image Computing and Computer Assisted Intervention (MICCAI), London, UK, Sep. 2009.
• J. Lee, C. Labat, A. K. Jain, G. Fichtinger, J. L. Prince, "Reduced-dimensionality matching for 3-D reconstruction of prostate brachytherapy implants from incomplete data", submitted to IEEE International Symposium on Biomedical Imaging, Boston, Massachusetts, Jun.-Jul. 2009.
• J. Lee, X. Liu, A. K. Jain, E. C. Burdette, J. L. Prince, G. Fichtinger, "Prostate Brachytherapy Seed Reconstruction with Gaussian Blurring and Optimal Coverage Cost", submitted to IEEE Trans. Medical Imaging, Dec. 2008.
• O. Sadowsky, J. Lee, J. L. Prince, R. H. Taylor, "Enhancement of Mobile C-arm Cone-Beam Reconstruction Using Prior Anatomical Models", Proceedings of SPIE Medical Imaging, Orlando, Florida, Feb. 2009.
• M. S. Ayad, J. Lee, J. L. Prince, G. Fichtinger, "Prostate Brachytherapy Seed Localization Using a Mobile C-arm Without Tracking", Proceedings of SPIE Medical Imaging, Orlando, Florida, Feb. 2009.
• J. Lee, X. Liu, J. L. Prince, G. Fichtinger, "Prostate Brachytherapy Seed Localization with Gaussian Blurring and Camera Self-Calibration", Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), LNCS 5242(Part II):636-643, New York City, New York, Sep. 2008.
• J. Lee, X. Liu, A. K. Jain, J. L. Prince, G. Fichtinger, "Tomosynthesis-based Radioactive Seed Localization in Prostate Brachytherapy Using Modified Distance Map Images", Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 2008.
• X. Liu, A.K. Jain, and G. Fichtinger, "Prostate Implant Reconstruction with Discrete Tomography", Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI 2007), LNCS 4791:734-742, Brisbane, Australia, Oct. 2007.
• C. Labat, A. Jain, G. Fichtinger, and J. Prince, "Toward Optimal Matching for 3D Reconstruction on Brachytherapy Seeds", Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI 2007), LNCS 4792:701-709, Brisbane, Australia, Oct. 2007.