Difference between revisions of "Resources"
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* The Java Image Science Toolkit (JIST) has a [http://www.nitrc.org/projects/jist/ project page] and [http://www.nitrc.org/frs/?group_id=228 downloads]. | * The Java Image Science Toolkit (JIST) has a [http://www.nitrc.org/projects/jist/ project page] and [http://www.nitrc.org/frs/?group_id=228 downloads]. | ||
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| + | * Source code and demonstrations for the Multiple-object Geometric Deformable Model (MGDM) can be found on the [http://www.nitrc.org/projects/mgdm/ MGDM project page] hosted by NITRC. | ||
| + | * A [http://iacl.ece.jhu.edu/~john/mgdmMov.avi movie demo] of the decomposition and evolution of MGDM. | ||
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{{h3|Cerebellar Lobule Segmentation using Graph Cuts}} | {{h3|Cerebellar Lobule Segmentation using Graph Cuts}} | ||
| − | * | + | * {{iacl|~amod/cerlobule_seg_release_06_01_2016.tar.gz|Cerebellar Lobule Segmentation Code}} can be used to parcellate the cerebellum into lobules given a T1w MRI image. |
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* MIMECS is described in: {{pub|author=S. Roy, A. Carass, and J.L. Prince|title=[[Magnetic Resonance Image Example Based Contrast Synthesis|Magnetic Resonance Image Example Based Contrast Synthesis]]|jrnl=tmi|number=32(12):2348-2363|when=2013|doi=10.1109/TMI.2013.2282126|pdf=/proceedings/iacl/2013/RoyxTMI13-MIMECS.pdf}} | * MIMECS is described in: {{pub|author=S. Roy, A. Carass, and J.L. Prince|title=[[Magnetic Resonance Image Example Based Contrast Synthesis|Magnetic Resonance Image Example Based Contrast Synthesis]]|jrnl=tmi|number=32(12):2348-2363|when=2013|doi=10.1109/TMI.2013.2282126|pdf=/proceedings/iacl/2013/RoyxTMI13-MIMECS.pdf}} | ||
* Code and sample data is available on our NITRC Project Page titled [http://www.nitrc.org/projects/image_synthesis/ Image Synthesis]. | * Code and sample data is available on our NITRC Project Page titled [http://www.nitrc.org/projects/image_synthesis/ Image Synthesis]. | ||
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| + | {{h3|Rician Mixture Model}} | ||
| + | * The Rician mixture model for segmenting the brain is described in: {{pub|author=S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince|title=Consistent Segmentation using a Rician Classifier|jrnl=mia|number=16(2):524-535|when=2012|doi=doi:10.1016/j.media.2011.12.001|pubmed=22204754|pdf=/proceedings/iacl/2012/RoyxMIA13-Rician_Classifier.pdf}} | ||
| + | * Matlab executables are {{iacl|~roy/softwares/ricemixmodel3D.zip|available}}. | ||
Revision as of 15:02, 18 November 2016
<meta name="title" content="Resources"/>
General Image Processing
GVF Software
- 2D GVF code for Matlab is available by following this link.
- 2D Multigrid GVF code in C is available by following this link.
- 3D GVF example Java code is available here. This 3D version is built around JIST.
JIST
- The Java Image Science Toolkit (JIST) has a project page and downloads.
MGDM
- Source code and demonstrations for the Multiple-object Geometric Deformable Model (MGDM) can be found on the MGDM project page hosted by NITRC.
- A movie demo of the decomposition and evolution of MGDM.
Brain
Validation Data for Cortical Reconstruction Algorithms
- The cortical validation resource for evaluation of cortical reconstruction algorithms on both normal subjects and subjects with White Matter lesions.
Cerebellar Lobule Segmentation using Graph Cuts
- Cerebellar Lobule Segmentation Code can be used to parcellate the cerebellum into lobules given a T1w MRI image.
MIMECS
- MIMECS is described in: S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Example Based Contrast Synthesis", IEEE Trans. on Medical Imaging, 32(12):2348-2363, 2013. (PDF) (doi)
- Code and sample data is available on our NITRC Project Page titled Image Synthesis.
Rician Mixture Model
- The Rician mixture model for segmenting the brain is described in: S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Consistent Segmentation using a Rician Classifier", Medical Image Analysis, 16(2):524-535, 2012. (PDF) (doi) (PubMed)
- Matlab executables are available.
Progression Score Model
- The Progression Score Model Toolkit can be obtained from the NITRC project page.
Retinal
AURA Tools
- The AURA Tools software package allows for the automated processing and segmentation of Optical Coherence Tomography images of the macula cube. It is available from the NITRC website.
- Version 1.2 includes the software originally presented in: A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Retinal layer segmentation of macular OCT images using boundary classification", Biomedical Optics Express, 4(7):1133-1152, 2013. (PDF) (doi) (PMCID 3704094)
Cardiac
HARP
- For MATLAB demonstration software send an email to
and expect a reply within five business days. We also have a collection of frequently asked questions about our HARP software.
