Publications

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Publications

2017

• N. Gonzalez Caldito, B. Antony, Y. He, A. Lang, J. Nguyen, A. Rothman, E. Ogbuokiri, A. Avornu, L. Balcer, E. Frohman, T.C. Frohman, P. Bhargava, J. Prince, P.A Calabresi, and S. Saidha, "Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans", Current eye research, 43(3):415-423, 2017. (doi)
• D.L. Grimm, M. Stone, J. Woo, J. Lee, J.H. Hwang, G.E. Bedrosian, and J.L. Prince, "The Effects of Palate Features and Glossectomy Surgery on /s/ Production", Journal of Speech, Language, and Hearing Research, 60(12):3417-3425, 2017. (doi) (PubMed)
• A.D. Gomez, A. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "Group Patterns of Acceleration-Induced Brain Deformation in Vivo", Computational Biomechanics for Medicine Workshop XII at the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017.
• I. Oguz, A. Carass, D.L. Pham, S. Roy, N. Subbana, P.A. Calabresi, P.A. Yushkevich, R.T. Shinohara, and J.L. Prince, "Dice overlap measures for multiple objects: Application to lesion segmentation", Brain Lesion Workshop, in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi) (PubMed)
• A. Carass, M. Shao, X. Li, B. Tran, B.E. Dewey, A.M. Blitz, S. Roy, J.L. Prince, and L.M. Ellingsen, "Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients", 3^rd International Workshop on Patch-based Techniques in Medical Imaging in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi) (PubMed)
• J. Glaister, A. Carass, D.L. Pham, J.A. Butman, and J.L. Prince, "Falx Cerebri Segmentation via Multiatlas Boundary Fusion", 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi) (PubMed)
• Y. He, A. Carass, Y. Yun, C. Zhao, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Towards topological correct segmentation of macular OCT from cascaded FCNs", 4^th Ophthalmic Medical Image Analysis Workshop in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi)
• C. Zhao, A. Carass, J. Lee, Y. He, and J.L. Prince, "Whole brain segmentation and labeling from CT using synthetic MR images", Eighth International Workshop on Machine Learning in Medical Imaging (MLMI 2017), Quebec, Canada, September 10, 2017. (doi)
• C. Zhao, A. Carass, A. Jog, J. Lee, and J.L. Prince, "A super-voxel based random forest synthesis framework for bidirectional MR/CT synthesis", Simulation and Synthesis in Medical Imaging (SASHIMI 2017) in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi)
• F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince, "Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 36(10):2116-2128, 2017. (doi) (PubMed)
• B.J. Antony, B.-J. Kim, A. Lang, A. Carass, J.L. Prince, and D.J. Zack, "Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model", PLoS ONE, 12(8):e0181059, 2017. (doi) (PubMed)
• A.D. Gomez, A. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "Full-Field 4D Measurements of Acceleration-Induced Deformation in the Living Human Brain", 14^th US National Congress on Computational Mechanics (USNCCM), Montreal, Canada, July 2017.
• J. Glaister, A. Carass, T. NessAiver, J.V. Stough, S. Saidha, P.A. Calabresi, and J.L. Prince, "Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort", NeuroImage, 158:430-440, 2017. (doi) (PubMed)
• J. Lee, O.Y. Mian, Y. Le, H.J. Bae, E.C. Burdette, T.L. DeWeese, J.L. Prince, and D.Y. Song, "Intraoperative Registered Ultrasound and Fluoroscopy (iRUF) for dose calculation during prostate brachytherapy: Improved accuracy compared to standard ultrasound-based dosimetry", Radiother Oncol, 124(1):61-67, 2017. (doi) (PubMed)
• A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham, "Longitudinal multiple sclerosis lesion segmentation data resource", Data in Brief, 12:346-350, 2017. (doi) (PubMed)
• S. Ganpule, N.P. Daphalapurkar, K.T. Ramesh, A.K. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics", J. Neurotrauma, 34(13):2154-2166, 2017. (doi) (PubMed)
• L. Pereira, R.D. Airan, A. Fishman, J.J. Pillai, K. Kansal, C.U. Onyike, J.L. Prince, S.H. Ying, and H.I. Sair, "Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)", Human Brain Mapping, 38(6):3001-3010, 2017. (doi) (PubMed)
• F. Xing, J.L. Prince, M.L. Stone, V.J. Wedeen, G. El Fakhri, and J. Woo, "A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• B.E. Dewey, A. Carass, A.M. Blitz, and J.L. Prince, "Efficient Multi-Atlas Registration using an Intermediate Template Image", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• J.A. Ramsey, A.D. Gomez, and J.L. Prince, "Test-suite for image-based motion estimation of the brain and tongue", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• B.J. Antony, A. Carass, A. Lang, B.-J. Kim, D.J. Zack, and J.L. Prince, "Longitudinal Analysis of Mouse SDOCT Volumes", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• J. Glaister, A. Carass, D. L. Pham, and J.L. Prince, "Automatic falx cerebri and tentorium cerebelli segmentation from Magnetic Resonance Images", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• A. Lang, A. Carass, A.K. Bittner, H.S. Ying, and J.L. Prince, "Improving graph-based OCT segmentation for severe pathology in Retinitis Pigmentosa patients", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• J. Lee, A. Carass, A. Jog, C. Zhao, and J. L. Prince, "Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• Y. Yun, A. Carass, A. Lang, J.L. Prince, and B.J. Antony, "Collaborative SDOCT Segmentation and Analysis Software", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, F. Prados, C.H. Sudre, M.J. Cardoso, N. Cawley, O. Ciccarelli, C.A.M. Wheeler-Kingshott, S. Ourselin, L. Catanese, H. Deshpande, P. Maurel, O. Commowick, C. Barillot, X. Tomas-Fernandez, S.K. Warfield, S. Vaidya, A. Chunduru, R. Muthuganapathy, G. Krishnamurthi, A. Jesson, T. Arbel, O. Maier, H. Handels, L.O. Iheme, D. Unay, S. Jain, D.M. Sima, D. Smeets, M. Ghafoorian, B. Platel, A. Birenbaum, H. Greenspan, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham, "Longitudinal Multiple Sclerosis Lesion Segmentation: Resource and Challenge", NeuroImage, 148(C):77-102, 2017. (doi) (PubMed)
• K. Kansal, Z. Yang, A.M. Fishman, H.I. Sair, S.H. Ying, B.M. Jedynak, J.L. Prince, C.U. Onyike, "Structural cerebellar correlates of cognitive and motor dysfunctions in cerebellar degeneration", Brain, 140(3):707-720, 2017. (doi) (PubMed)
• M. Chen, A. Carass, A. Jog, J. Lee, S. Roy, and J.L. Prince, "Cross contrast multi-channel image registration using image synthesis for MR brain images", Medical Image Analysis, 36(2):2-14, 2017. (doi) (PubMed)
• C Ye and J.L. Prince, "Probabilistic tractography using Lasso bootstrap", Medical Image Analysis, 35:544-553, 2017. (doi) (PubMed)
• A. Jog, A. Carass, S. Roy, D.L. Pham, and J.L. Prince, "Random Forest Regression for Magnetic Resonance Image Synthesis", Medical Image Analysis, 35:475-488, 2017. (doi) (PubMed)

2016

• C. Ye and J.L. Prince, "A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation", Computerized Medical Imaging and Graphics, 54:35-47, 2016. (doi) (PubMed)
• S. Reaungamornrat, T. De Silva, A. Uneri, S. Vogt, G. Kleinszig, A.J. Khanna, J.-P. Wolinsky, J.L. Prince, and J.H. Siewerdsen, "MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery", IEEE Trans. on Medical Imaging, 35(11):2413-2424, 2016. (doi) (PubMed)
• S. Roy, Y.-Y. Chou, A. Jog, J. Butman, and D.L. Pham, "Patch Based Synthesis of Whole Head MR Images: Application to EPI Distortion Correction", SASHIMI: Simulation and Synthesis in Medical Imaging Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016. (doi)
• A. Jog, A. Carass, and J.L. Prince, "Self Super-resolution for Magnetic Resonance Images", 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016. (doi)
• A.D. Gomez, F. Xing, D. Chan, D.L. Pham, P. Bayly, and J.L. Prince, "Motion Estimation with Finite-Element Biomechanical Models and Tracking Constraints from Tagged MRI", Computational Biomechanics for Medicine XI Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016.
• F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince, "Incompressible Phase Registration for Motion Estimation from Tagged Magnetic Resonance Images", Reconstruction and Analysis of Moving Body Organs‎ (RAMBO 2016) Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016. (doi)
• S. Roy, A. Carass, J. Pacheco, M. Bilgel, S.M. Resnick, J.L. Prince, and D.L. Pham, "Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation", NeuroImage: Clinical, 11:264-275, 2016. (doi)
• Y. Huo, A.J. Plassard, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landmann, "Consistent Cortical Reconstruction and Multi-atlas Brain Segmentation", NeuroImage, 138:197-210, 2016. (doi)
• C. Ye, J. Zhuo, R.P. Gullapalli, and J.L. Prince, "Estimation of fiber orientations using neighborhood information", Medical Image Analysis, 32:243-256, 2016. (doi)
• M. Bilgel, J.L. Prince, D.F. Wong, S.M. Resnick, and B.M. Jedynak, "A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging", NeuroImage, 134:658-670, 2016. (doi)
• F. Xing, J.L. Prince, and B.A. Landman, "Investigation of Bias in Continuous Medical Image Label Fusion", PloS One, 11(6):e0155862, 2016. (doi)
• F. Xing, J. Woo, J. Lee, E.Z. Murano, M. Stone, and J.L. Prince, "Analysis of 3-D Tongue Motion From Tagged and Cine Magnetic Resonance Images", Jrnl. of Speech, Language, and Hearing Research, 59(3):468-479, 2016. (doi)
• Z. Yang, C. Ye, J.A. Bogovic, A. Carass, B.M. Jedynak, S.H. Ying, and J.L. Prince, "Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease", NeuroImage, 127:435-444, 2016. (doi)
• E. Dehghan, Y. Le, J. Lee, D. Song, G. Fichtinger, and J.L. Prince, "CT and MRI Fusion for Postimplant Prostate Brachytherapy Evaluation", 13^th IEEE International Symposium on Biomedical Imaging (ISBI 2016), Prague, Czech Republic, April 13 - 16, 2016. (doi)
• A. Lang, A. Carass, B.M. Jedynak, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Intensity Inhomogeneity Correction of Macular OCT Using N3 and Retinal Flatspace", 13^th IEEE International Symposium on Biomedical Imaging (ISBI 2016), Prague, Czech Republic, April 13 - 16, 2016. (doi) (PubMed) (PMCID 5042207)
• D. Coon, L. Chen, E.M. Boctor, J.L. Prince, and B. Bojovic, "Proof-of-Concept Studies for Marker-Based Ultrasound Doppler Analysis of Microvascular Anastomoses in a Modified Large Animal Model", Jrnl. of Reconstructive Microsurgery, 32(04):251-255, 2016. (doi)
• M. Bilgel, Y. An, Y. Zhou, D.F. Wong, J.L. Prince, L. Ferrucci, and S.M. Resnick, "Individual estimates of age at detectable amyloid onset for risk factor assessment", Alzheimer's & Dementia, 12(4):373-379, 2016. (doi) (PubMed) (PMCID 4841700)
• J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-12, 2016. (doi)
• M. Stone, J. Woo, J. Lee, T. Poole, A. Seagraves, M. Chung, E. Kim, E.Z Murano, J.L. Prince, and S.S. Blemker, "Structure and variability in human tongue muscle anatomy", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-9, 2016. (doi)
• L. Liu, J. Glaister, X. Sun, A. Carass, T.D. Tran, and J.L. Prince, "Segmentation of Thalamus from MR images via Task-Driven Dictionary Learning", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• S.M. Abulnaga, Z. Yang, A. Carass, K. Kansal, B.M. Jedynak, C.U. Onyike, S.H. Ying, and J.L. Prince, "A toolbox to visually explore cerebellar sub-structure shape changes in cerebellar ataxia", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• Z. Yang, S.M. Abulnaga, A. Carass, K. Kansal, B.M. Jedynak, C. Onyike, S.H. Ying, and J.L. Prince, "Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Structural Change Pattern Visualization", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• J. Glaister, A. Carass, J.V. Stough, P.A. Calabresi, and J.L. Prince, "Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• Y. Huo, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landman, "Combining Multi-atlas Segmentation with Brain Surface Estimation", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• L.M. Ellingsen, S. Roy, A. Carass, D.L. Pham, A.M. Blitz, and J.L. Prince, "Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)
• A.J. Plassard, Z. Yang, S. Rane, J.L. Prince, D.O. Claassen, and B.A. Landman, "Improving cerebellar segmentation with statistical fusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• K. Li, C. Ye, Z. Yang, A. Carass, S.H. Ying, and J.L. Prince, "Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• C. Zhao, A. Carass, A. Jog, and J.L. Prince, "Effects of Spatial Resolution on Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi) (PubMed)
• S. Reaungamornrat, T. De Silva, A. Uneri, J.-P. Wolinsky, A.J. Khanna, G. Klienszig, S. Vogt, J.L. Prince, and J.H. Siewerdsen, "MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• A. Lang, A. Carass, O. Al-Louzi, P. Bhargava, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Combined registration and motion correction of longitudinal retinal OCT data", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)
• B.J. Antony, M. Chen, A. Carass, B.M. Jedynak, O. Al-Louzi, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Voxel Based Morphometry in Optical Coherence Tomography: Validation & Core Findings", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)
• B.J. Antony, A. Lang, E.K. Swingle, O. Al-Louzi, A. Carass, S.D. Solomon, P.A. Calabresi, S. Saidha, and J.L. Prince, "Simultaneous Segmentation of Retinal Surfaces and Microcystic Macular Edema in SDOCT Volumes", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)