Publications/2010s

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2011

  • F. Xing, S. Soleimanifard, B.A. Landman, and J.L. Prince, "Statistical Fusion of Continuous Labels: Identification of Cardiac Landmarks", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi) (PubMed)
  • B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee, A.W. Toga, J.L. Prince, and S.H. Ying, "MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2", The Cerebellum, 1-8, 2011. (doi) (PubMed)
  • P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham, "Direct segmentation of the major white matter tracts in diffusion tensor images", NeuroImage, 58(2):458-468, September 2011. (PDF) (doi) (PubMed)
  • A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis", NeuroImage, 56(4):1982-1992, June 2011. (doi) (PubMed) (PMCID 3105165)
  • N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham, "Segmentation of brain images using adaptive atlases with application to ventriculomegaly", 22nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (doi) (PubMed) (PMCID 3478153)
  • S. Roy, A. Carass, and J.L. Prince, "A Compressed Sensing Approach For MR Tissue Contrast Synthesis", 22nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (PDF) (doi) (PubMed) (PMCID 3398746)
  • H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori, "A framework on surface-based connectivity quantification for the human brain", Journal of Neuroscience Methods, 197(2):324-332, April 2011. (PDF) (doi) (PubMed) (PMCID 3081907)
  • A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince, "Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation", 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), Quebec, Canada, June 26-30, 2011.
  • N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, and D.L. Pham, "Fiber tractography and tract segmentation in multiple sclerosis lesions", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
  • M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince, "Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
  • S. Roy, A. Carass, and J.L. Prince, "Compressed Sensing Based Intensity Non-Uniformity Correction", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (PDF) (doi)
  • M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince, "Distance Transforms in Multi Channel MR Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi)
  • S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince, "Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi)
  • F.E.A. ElShahaby, B.A. Landman, and J.L. Prince, "Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi) (PubMed) (PMCID 3087384)
  • B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl, "Multi-parametric neuroimaging reproducibility: A 3-T resource study", NeuroImage, 54(4):2854–2866, 2011. (PDF) (doi) (PubMed) (PMCID 3020263)
  • A.J. Asman, A.G. Scoggins, J.L. Prince, and B.A. Landman, "Foibles, Follies, and Fusion: Assessment of Statistical Label Fusion Techniques for Web-Based Collaborations using Minimal Training", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi) (PubMed) (PMCID 3083117)
  • J. Lee, N. Kuo, A. Deguet, E. Dehghan, D.Y. Song, E.C. Burdette, and J.L. Prince, "Intraoperative 3-D reconstruction of prostate brachytherapy implants with automatic pose correction", Physics in Medicine and Biology, 56(15):5011-5027, 2011. (PDF) (doi) (PubMed)
  • E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, E.C. Burdette, D. Song, J.L. Prince, and G. Fichtinger, "Point-to-volume registration of prostate implants to ultrasound", 14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2011), Toronto, Canada, September 18-22, 2011. (PDF) (PubMed) (PMCID 3201745)
  • J.W. Staymen, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen, "Using prior images with registration in penalized likelihood estimation for CT with sparse data", The 53rd Annual Meeting of American Association of Physicists in Medicine (AAPM), Vancouver, Canada, July 31-August 4, 2011 (doi)
  • G.J. Gang*, J. Lee*, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J.H. Siewerdsen, "Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance", Medical Physics, 38(4):1754-1768, 2011, *equal contribution. (PDF) (doi) (PubMed) (PMCID 3069989)
  • J.W. Stayman, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen, "Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi)
  • O. Sadowsky, J. Lee, E.G. Sutter, S.J. Wall, J.L. Prince, and R.H. Taylor, "Hybrid cone-beam tomographic reconstruction: Incorporation of prior anatomical models to compensate for missing data", IEEE Trans. on Medical Imaging, 30(1):69-83, January 2011. (PDF) (doi) (PubMed)
  • J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "REDMAPS: Reduced-dimensionality matching for prostate brachytherapy seed reconstruction", IEEE Trans. on Medical Imaging, 30(1):38-51, January 2011. (PDF) (doi) (PubMed) (PMCID 3072797)


2010

  • X. Liu and J.L. Prince, "Shortest path refinement for motion estimation from tagged MR images", IEEE Trans. on Medical Imaging, 29(8):1560-1572, August 2010. (PDF) (doi) (PubMed)
  • M. Stone, X. Liu, H. Chen, and J.L. Prince, "A preliminary application of principal components and cluster analysis to internal tongue deformation patterns", Computer Methods in Biomechanics and Biomedical Engineering, 13(4):493-503, August 2010. (PDF) (doi) (PubMed) (PMCID 3046779)
  • E.Z. Murano, H. Shinagawa, J. Zhuo, R.P. Gullapalli, R.A. Ord, J.L. Prince, and M. Stone, "Application of diffusion tensor imaging after glossectomy", Otolaryngology - Head and Neck Surgery, 143(2):304-306, August 2010. (PDF) (doi) (PubMed) (PMCID 2924629)
  • H.K. Agarwal, J.L. Prince, and K.Z. Abd-Elmoniem, "Total removal of unwanted harmonic peaks (TruHARP) MRI for single breath-hold high-resolution myocardial motion and strain quantification", Magnetic Resonance in Medicine, 64(2):574-585, August 2010. (PDF) (doi) (PubMed)
  • S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince, "Identification of Myocardial Infarction using Fractional Anisotropy of 3D Strain Tensors", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010. (PDF)
  • H.K. Agarwal, S. van Elderen, M. Versluis, A. de Roos, A. Webb, J. Smink, and M. Stuber, "Navigator techniques for coronary MRA at 7 T", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. (PDF) (doi)
  • S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince, "Visualization of infarction using fractional anisotropy", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. (doi)
  • M.S. Tomas, K.Z. Abd-Elmoniem, T. Sasano, E.J. Vonken, A. Youssef, M. Stuber, H.K. Agarwal, S. Soleimanifard, E. Marbán, J.L Prince, T.P. Abraham, and R. Abraham, "Regional evolution of mechanical dyssynchrony in a closed-chest porcine model of myocardial infarction as assessed by cardiac magnetic resonance", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. (doi)
  • A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying, "Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration", Journal of Neurology, 257(8):1406-1408, August 2010. (PDF) (doi) (PubMed) (PMCID 2963035)
  • B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham, "JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis", NCI's NCRI, Washington D.C., June 21-22, 2010.
  • M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince, and S.M. Resnick, "Longitudinal changes in cortical thickness associated with normal aging", NeuroImage, 52(4):1215-1223, October 2010. (PDF) (doi) (PubMed) (PMCID 2910226)
  • K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, "Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities", Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010. (doi) (PubMed) (PMCID 2998761)
  • N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Cortical thinning in Multiple Sclerosis", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich, "Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying, "Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Multi-Channel Enhancement of the Adaptive Bases Algorithm", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince, "A Protocol for Manual Correction of Gyral Based Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince, "A Java Application for Manually Editing Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein, "Graph-Theoretical Methods for Statistical Inference on MR Connectome Data", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
  • J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman, "Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
  • S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince, "Longitudinal Changes of White Matter Lesions", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
  • S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince, "MR Contrast Synthesis for Lesion Segmentation", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (doi) (PubMed) (PMCID 2995277)
  • A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich, "MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability", Multiple Sclerosis, 16(2):166-77, 2010. (doi) (PubMed) (PMCID 2820126)
  • J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi, "Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS", Annual Meeting of the American Academy of Neurology (AAN 2010), Toronto, Canada, April 10-17, 2010.
  • B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman, "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software", Neuroinformatics, 8:5-17, March 2010. (doi) (PubMed) (PMCID 2860951)
  • J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince, "Statistical Recombination of Rater Labels on Surfaces", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2997739)
  • S. Roy, A. Carass, and J.L. Prince, "Synthesizing MR contrast and resolution through a patch matching technique", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi) (PubMed) (PMCID 2860803)
  • X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "A novel contrast for DTI visualization for thalamus delineation", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi)
  • B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi) (PubMed) (PMCID 2854412)
  • N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham, "A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions", NeuroImage, 49(2):1524-1535, January 2010. (doi) (PubMed) (PMCID 2806481)
  • J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Topology-Preserving STAPLE", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2010), San Francisco, California, June 14, 2010. (PDF) (doi)
  • B.A. Landman, J.A. Bogovic, and J.L. Prince, "Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi) (PubMed) (PMCID 2917119)
  • L.M. Ellingsen, G. Chintalapani, R.H. Taylor, and J.L. Prince, "Robust deformable image registration using prior shape information for atlas to patient registration", Comput. Med. Imaging Graph, 34(1):79-90, January 2010. (PDF) (doi) (PubMed)
  • J. Bian, J.H Siewerdsen, X. Han, E.Y. Sidky, J.L. Prince, C.A. Pelizzari, and X. Pan, "Evaluation of sparse-view reconstruction from flat-panel-detector cone-beam CT", Physics in Medicine and Biology, 2010. (PDF) (doi) (PubMed)
  • E. Dehghan, J. Lee, M. Moradi, X. Wen, G. Fichtinger, and S.E. Salcudean, "Prostate brachytherapy seed localization using C-arm rotation measurement and motion compensation", 13th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2010), Beijing, China, September 20-24, 2010. (PubMed)
  • G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen, "Task-based analysis of detectability in tomosynthesis and cone-beam CT: validation of Fourier metrics in comparison to real observers", The 52nd Annual Meeting of the American Association of Physicists in Medicine, Philadelphia, PA, July 18-22, 2010. (doi)
  • G.J. Gang, D.J. Tward, J. Lee, and J.H. Siewerdsen, "Anatomical background and the generalized detectability index for tomosynthesis and cone-beam CT", Medical Physics, 37(5):1948-1965, May 2010. (doi) (PubMed) (PMCID 2862054)
  • N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince, "Seed localization in MRI-guided prostate brachytherapy using inversion-recovery with on-resonant water suppression (IRON)", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
  • N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince, "MRI-based prostate brachytherapy seed localization", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. Based Brachytherapy.pdf (PDF) (doi)
  • M.S. Ayad, J. Lee, A. Deguet, E.C. Burdette, and J.L. Prince, "C-arm pose estimation using a set of coplanar ellipses in correspondence", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (PDF) (doi) (PubMed) (PMCID 2904530)
  • J. Lee, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "Optimal reconstruction method for intraoperative seed localization using fluoroscopy in prostate brachytherapy", American Brachytherapy Society Annual meeting, Atlanta, Georgia, Apr-May. 2010.
  • N. Kuo, J. Lee, A. Deguet, D.Y. Song, E.C. Burdette, and J.L. Prince, "Automatic Segmentation of Seeds and Fluoroscope Tracking (FTRAC) Fiducial in Prostate Brachytherapy X-ray Images", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi)
  • G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen, "The generalized NEQ and detectability index for tomosynthesis and cone-beam CT: from cascaded systems analysis to human observers", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi)
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