Difference between revisions of "Prince/Publications/Journal"

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{{iacl-pub| author = Y. Liu, J. Chen, S. Wei, A. Carass, and J.L. Prince | title = On Finite Difference Jacobian Computation in Deformable Image  Registration | jrnl = ijcv | when = April 2024 | doi = 10.1007/s11263-024-02047-1 | arXiv = 2212.06060}}
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{{iacl-pub| author = A. Carass, D. Greenman, B.E. Dewey, P.A. Calabresi, J.L. Prince, and D.L. Pham | title = Image harmonization improves consistency of intra-rater delineations of MS lesions in heterogeneous MRI | journal = NeuroImage: Reports | number = 4(1):100195 | when = 2024 | doi = 10.1016/j.ynirp.2024.100195}}
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{{iacl-pub| author = C. Gao, B.A. Landman, J.L. Prince, and A. Carass| title = Reproducibility evaluation of the effects of MRI defacing on brain segmentation| jrnl = jmi| number = 10(6):064001 | when = November 2023| doi = 10.1117/1.JMI.10.6.064001 | pdf = ~aaron/papers/2023-JMI-Gao-Reproducibilty-evaluation-of-the-effects-of-MRI-defacing-on-brain-segmentation.pdf}}
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{{iacl-pub| author = L. Zuo, Y. Liu, Y. Xue, B.E. Dewey, S.W. Remedios, S.P. Hays, M. Bilgel, E.M. Mowry, S.D. Newsome, P.A. Calabresi, S.M. Resnick, J.L. Prince, and A. Carass | title = HACA3: A unified approach for multi-site MR image harmonization | jrnl = cmig | number = 109:102285 | when = 2023 | doi = 10.1016/j.compmedimag.2023.102285 | arXiv = 2212.06065}}
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{{iacl-pub| author = R.J. Okamoto, J.D. Escarcega, A. Alshareef, A. Carass, J.L. Prince, C.L. Johnson, and P.V. Bayly | title = Effect Of Direction And Frequency Of Skull Motion On Mechanical Vulnerability Of The Human Brain | journal = J Biomech Eng. | number = 145(11):111005 | when = 2023 | doi = 10.1115/1.4062937}}
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{{iacl-pub| author = Y. He, A. Carass, Y. Liu, P.A. Calabresi, S. Saidha, and J.L. Prince | title = Longitudinal deep network for consistent OCT layer segmentation | number = 14(5):1874-1893 | when = 2023| jrnl = bmoe | doi = 10.1364/BOE.487518 | pubmed = PMC10191669}}
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{{iacl-pub| author = M. Shao, F. Xing, A. Carass, X. Liang, J. Zhuo, M. Stone, J. Woo, and J.L. Prince | title = Analysis of Tongue Muscle Strain During Speech From Multimodal Magnetic Resonance Imaging | journal = Journal of Speech, Language, and Hearing Research | number = 66(2):513-526 | when = 2023 | doi = 10.1044/2022_JSLHR-22-00329 | pubmed = 36716389}}
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{{iacl-pub| author = S. Han, S.W. Remedios, M. Schär, A. Carass, and J.L. Prince | title = ESPRESO: An algorithm to estimate the slice profile of a single magnetic resonance image | jrnl = mri | number = 98:1-9 | when = 2023 | doi = 10.1016/j.mri.2023.01.012 | pubmed = 36702167}}
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{{iacl-pub| author = Y. Liu, A. Carass, L. Zuo, Y. He, S. Han, L. Gregori, S. Murray, R. Mishra, J. Lei, P.A. Calabresi, S. Saidha, and J.L. Prince| title = Disentangled Representation Learning for OCTA Vessel Segmentation with Limited Training Data| jrnl = tmi| number = 41(12):3686-3698| when = 2022| doi = 10.1109/TMI.2022.3193029 | pubmed = 35862335}}
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{{iacl-pub| author = K. Upadhyay, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, D.L. Pham, J.L. Prince, and K.T. Ramesh | title = Development and validation of subject-specific 3D human head models based on a nonlinear visco-hyperelastic constitutive framework | journal = J.&nbsp;R.&nbsp;Soc.&nbsp;Interface | number = 19:20220561 | when = 2022 | doi = https://doi.org/10.1098/rsif.2022.0561}}
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{{iacl-pub| author = E.S. Sotirchos, E.S. Vasileiou, A.G. Filippatou, K.C. Fitzgerald, M.D. Smith, H.-N. Lord, G. Kalaitzidis, J. Lambe, A. Duval, J.L. Prince, E.M. Mowry, S. Saidha, and P.A. Calabresi | title = Association of Serum Neurofilament Light Chain With Inner Retinal Layer Thinning in Multiple Sclerosis | journal = Neurology | number = 99(7):e688-e697 | when = 2022 | doi = 10.1212/WNL.0000000000200778 }}
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{{iacl-pub| author = N.E. Fritz, E.M. Edwards, C. Ye, J. Prince, Z. Yang, T. Gressett, J. Keller, E. Myers, P.A. Calabresi, and K.M. Zackowski | title = Cerebellar contributions to motor and cognitive control in Multiple Sclerosis | journal = Archives of Physical Medicine and Rehabilitation | number = 103(8):1592-1599 | when = 2022 | doi = 10.1016/j.apmr.2021.12.010}}
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{{iacl-pub| author = K. Upadhyay, D.G. Giovanis, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, M.D. Shields, and K.T. Ramesh | title = Data-driven Uncertainty Quantification in Computational Human Head Models | journal=Computer Methods in Applied Mechanics and Engineering | number = 398:115108 | when = 2022 | doi = 10.1016/j.cma.2022.115108}}
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{{iacl-pub| author = X. Liu, F. Xing, M. Stone, J.L. Prince, J. Kim, G. El Fakhri, and J. Woo | title = Tagged-MRI to audio synthesis with a pairwise heterogeneous deep translator | journal = The Journal of the Acoustical Society of America | number = 151:A133 | when = 2022 | doi = 10.1121/10.0010891}}
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{{iacl-pub| author = A.G. Filippatou, E.S. Vasileiou, Y. He, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, M.A. Mealy, M. Levy, Y. Liu, J.L. Prince, E.M. Mowry, S. Saidha, P.A. Calabresi, E.S. Sotirchos, C. Fraser, and S. Mollan | title = Optic Neuritis–Independent Retinal Atrophy in Neuromyelitis Optica Spectrum Disorder | journal =  Journal of Neuro-Ophthalmology | number = 42(1):e40-e47 | when = 2022 | doi = 10.1097/WNO.0000000000001282}}
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{{iacl-pub| author = R. Kerestes, S. Han, S. Balachander, C. Hernandez-Castillo, J.L. Prince, J. Diedrichsen, and I.H. Harding| title = A Standardized Pipeline for Examining Human Cerebellar Grey Matter Morphometry using Structural Magnetic Resonance Imaging | journal = JoVE | number =  180:e63340 | when = 2022 | doi = 10.3791/63340}}
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{{iacl-pub | author = A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, K. Upadhyay, P.V. Bayly, D.L. Pham, J.L. Prince and K.T.Ramesh | title = Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Brain Models | pub = Brain Multiphysics | number = 100028 | when = 2021 | doi = https://doi.org/10.1016/j.brain.2021.100038}}
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{{iacl-pub | author = L. Zuo, B.E. Dewey, Y. Liu, Y. He, S.D. Newsome, E.M. Mowry, S.M. Resnick, J.L. Prince, and A. Carass | title = Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory | jrnl = ni | number = 243:118569 | when = 2021 | doi = 10.1016/j.neuroimage.2021.118569}}
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{{iacl-pub | author = P.V. Bayly, A. Alshareef, A.K. Knutsen, K. Upadhyay, R.J. Okamoto, A. Carass, J.A. Butman, D.L. Pham, J.L. Prince, K.T. Ramesh, and C.L. Johnson | title = MR imaging of human brain mechanics in vivo: new measurements to facilitate the development of computational models of brain injury | jrnl = abe | number = 49:2677-2692 | when = 2021 | doi = 10.1007/s10439-021-02820-0}}
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{{iacl-pub | author = Y. He, A. Carass, L. Zuo, B.E. Dewey, and J.L. Prince | title = Autoencoder Based Self-Supervised Test-Time Adaptation for Medical Image Analysis | jrnl = mia | number = 72:102136 | when = 2021 | doi = 10.1016/j.media.2021.102136}}
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{{iacl-pub| author = C Zhao, B.E. Dewey, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince | title = [[ISMORE|SMORE: A Self-supervised Anti-aliasing and Super-resolution Algorithm for MRI Using Deep Learning]]| jrnl = tmi| number = 40(3):805-817| when = 2021| doi = 10.1109/TMI.2020.3037187}}
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{{iacl-pub| author =  Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A.Calabresi, and J.L. Prince| title = Structured layer surface segmentation for retina OCT using fully convolutional regression networks| jrnl = media| number = 68:101856| when = 2021 | doi = 10.1016/j.media.2020.101856}}
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{{iacl-pub| author= A.G. Filippatou, E.S. Vasileiou, Y. He, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, M.A. Mealy, M. Levy, Y. Liu, J.L. Prince, E.M. Mowry, S. Saidha, P.A. Calabresi, and E.S. Sotirchos| title = Evidence of subclinical quantitative retinal layer abnormalities in AQP4-IgG seropositive NMOSD| journal = Multiple Sclerosis Journal| number = 1352458520977771| when = 2020| doi = 10.1177/1352458520977771}}
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{{iacl-pub| author = A.G. Filippatou, M. Moniruzzaman, E.S. Sotirchos, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, E. Vasileiou, S. Saidha, J.L. Prince, N. Haughey, P.A. Calabresi, and P. Bhargava| title = Serum ceramide levels are altered in multiple sclerosis| journal = Multiple Sclerosis Journal, number = 1352458520971816| when = 2020| doi = 10.1177/1352458520971816}}
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{{iacl-pub| author =  H. Yang, J. Sun, A. Carass, C. Zhao, J. Lee, J.L. Prince, and Z. Xu| title = Unsupervised MR-to-CT Synthesis using Structure-Constrained CycleGAN| jrnl = tmi| number = 39(12):4249-4261| when = 2020 | doi = 10.1109/TMI.2020.3015379}}
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{{iacl-pub | author = E.S. Sotirchos, A. Filippatou, K.C. Fitzgerald, S. Salama, S. Pardo, J. Wang, E. Ogbuokiri, N.J. Cowley, N. Pellegrini, O.C. Murphy, M.A. Mealy, J.L. Prince, M. Levy, P.A. Calabresi, S. Saidha| title = Aquaporin-4 IgG seropositivity is associated with worse visual outcomes after optic neuritis than MOG-IgG seropositivity and multiple sclerosis, independent of macular ganglion cell layer thinning| journal = Multiple Sclerosis Journal| number =26(11):1360-1371| when = 2021| doi = 10.1177/1352458519864928}}
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{{iacl-pub| author = A.K. Knutsen, A.D. Gomez, M. Gangolli, W.T. Wang, D. Chan, Y.C. Lu, E. Christoforou, J.L. Prince, P.V. Bayly, J.A. Butman, D.L. Pham|title = In vivo estimates of axonal stretch and 3D brain deformation during mild head impact| journal = Brain Multiphysics| number = 100015| when = 2020| doi = 10.1016/j.brain.2020.100015}}
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{{iacl-pub| author = J Oh, M Chen, K Cybulsky, S Suthiphosuwan, E Seyman, B Dewey, M. Diener-West, P. van Zijl, J. Prince, D.S. Reich, and P.A. Calabresi | title = Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis| journal = Multiple Sclerosis Journal| number = 1352458520923970| when = 2020| doi = 10.1177/1352458520923970}}
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{{iacl-pub| author = E.S. Sotirchos, N. Gonzalez Caldito, A. Filippatou, K.C. Fitzgerald, O.C. Murphy, J. Lambe, J. Nguyen, J. Button, E. Ogbuokiri, C.M. Crainiceanu, J.L. Prince, P.A. Calabresi, S. Saidha, and International Multiple Sclerosis Visual System (IMSVISUAL) Consortium| title = Progressive multiple sclerosis is associated with faster and specific retinal layer atrophy| journal = Annals of Neurology| number = 87(6):885-896| when = 2020 | doi = 10.1002/ana.25738}}
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{{iacl-pub| author = O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotircho, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, S. Saidha| title = Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures| journal = Multiple Sclerosis Journal| number = 26(7):815-828| when = 2020| doi = 10.1177/1352458519845116}}
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{{iacl-pub| author = J Lambe, A Rothman, J Prince, S Saidha, PA Calabresi, SD Newsome| title = Retinal pathology occurs in stiff-person syndrome| journal = Neurology| number =94(20):e2126-e2131| when = 2020| doi = 10.1212/WNL.0000000000008943}}
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{{iacl-pub| author=S. Han, Y. An, A. Carass, J.L. Prince, and S.M. Resnick| title = Longitudinal analysis of regional cerebellum volumes during normal aging| jrnl = ni| number = 220:117062| when = 2020| doi = 10.1016/j.neuroimage.2020.117062| pubmed = 32592850}}
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{{iacl-pub|author=A. Carass, S. Roy, A. Gherman, J.C. Reinhold, A. Jesson, T. Arbel, O. Maier, H. Handels, M. Ghafoorian, B. Platel, A. Birenbaum, H. Greenspan, D.L. Pham, C.M. Crainiceanu, P.A. Calabresi, J.L. Prince, W.R. Gray Roncal, R.T. Shinohara, and I. Oguz| title=Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis| journal=Nature Scientific Reports| number=10:8242| when=2020| doi=10.1038/s41598-020-64803-w|pubmed=32427874}}
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{{iacl-pub| author=S. Han, A. Carass, Y. He, and J.L. Prince| title=Automatic Cerebellum Anatomical Parcellation using U-Net with Locally Constrained Optimization| jrnl=ni| number=218:116819| when=2020| doi=10.1016/j.neuroimage.2020.116819}}
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{{iacl-pub|author=O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha|title=Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures|journal=Mult. Scler.|number=1352458519845116|when=2019|doi=10.1177/1352458519845116|pubmed=31094280}}
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{{iacl-pub|author=N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski|title=Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS|journal=Ann Clin Transl Neurol|6(3):586-595|when=2019|doi=10.1002/acn3.734|pubmed=30911581}}
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{{iacl-pub|author=J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri|title=A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI|jrnl=tmi|number=38(3):730-740|when=2019|doi=10.1109/TMI.2018.2870939}}
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{{iacl-pub|author=O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha|title=Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures|journal=Mult. Scler.|number=1352458519845116|when=2019|doi=10.1177/1352458519845116|pubmed=31094280}}
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{{iacl-pub|author=N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski|title=Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS|journal=Ann Clin Transl Neurol|6(3):586-595|when=2019|doi=10.1002/acn3.734|pubmed=30911581}}
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{{iacl-pub|author=J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri|title=A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI|jrnl=tmi|number=38(3):730-740|when=2019|doi=10.1109/TMI.2018.2870939}}
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{{iacl-pub|author=O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha|title=Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures|journal=Mult. Scler.|number=1352458519845116|when=2019|doi=10.1177/1352458519845116|pubmed=31094280}}
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{{iacl-pub|author=N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski|title=Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS|journal=Ann Clin Transl Neurol|6(3):586-595|when=2019|doi=10.1002/acn3.734|pubmed=30911581}}
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{{iacl-pub|author=J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri|title=A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI|jrnl=tmi|number=38(3):730-740|when=2019|doi=10.1109/TMI.2018.2870939}}
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{{iacl-pub|author=D. Li, J. Wu, Y. He, X. Yao, W. Yuan, D. Chen, H.-C. Park, S. Yu, J.L. Prince, X. Li|title=Parallel deep neural networks for endoscopic OCT image segmentation| jrnl = bmoe| number = 10(3):1126-1135| when = 2019|doi = 10.1364/BOE.10.001126| pubmed = 30891334}}
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{{iacl-pub|author=Y. Liu, A. Carass, Y. He, B.J. Antony, A. Filippatou, S. Saidha, S.D. Solomon, P.A. Calabresi, and J.L. Prince|title=Layer boundary evolution method for macular OCT layer segmentation|jrnl=bmoe|number=10(3):1064-1080|when=2019|doi=10.1364/BOE.10.001064|pubmed=30891330|pmcid=6420297}}
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{{iacl-pub|author=A.M. Ghanem, A.H. Hamimi, J.R. Matta, A. Carass, R.M. Elgarf, A.M. Gharib, and K.Z. Abd-Elmoniem|title=Dual Level-Set Framework for 3D Coronary Artery Wall Segmentation from Coronary CT Angiography|journal=Nature Scientific Reports|number=9:47|when=2019|doi=10.1038/s41598-018-37168-4|pubmed=|pmcid=}}
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{{iacl-pub|author=Y. He, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince|title=[[OCT Data|Retinal layer parcellation of optical coherence tomography images: Data resource for Multiple Sclerosis and Healthy Controls]]|journal=Data in Brief|number=22:601-604|when=2019|doi=10.1016/j.dib.2018.12.073|pubmed=30671506|pmcid=6327073}}
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{{iacl-pub|author=Y.-C. Lu, N.P. Daphalapurkar, A.K. Knutsen, J. Glaister, D.L. Pham, J.A. Butman, J.L. Prince, P.V. Bayly, and K.T. Ramesh|title=A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium|journal=Ann. Biomed. Eng.|when=2019|doi=10.1007/s10439-019-02226-z}}
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{{iacl-pub|author=E.S. Sotirchos, N. Gonzalez-Caldito, B.E. Dewey, K.C. Fitzgerald, J. Glaister, A. Filippatou, E. Ogbuokiri, S. Feldman, O. Kwakyi, H. Risher, C. Crainiceanu, D.L. Pham, P.C. Van Zijl, E.M. Mowry, D.S. Reich, J.L. Prince, P.A. Calabresi, and S. Saidha|title=Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis|journal=Multiple Sclerosis Journal|when=2019|doi=10.1177/1352458519826364}}
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{{iacl-pub|author=N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al‐Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, and K.M. Zackowski|title=Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS|journal=Annals of Clinical and Translational Neurology|number=6(3):586-595|when=2019|doi=10.1002/acn3.734}}
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{{iacl-pub|author=M. Chen, J.C. Gee, J.L. Prince, and G.K. Aguirre|title=2D Modeling and Correction of Fan-beam Scan Geometry in OCT|journal=Comput Pathol Ophthalmic Med Image Anal|number = 11039:328-335|when = 2018|doi = 10.1007/978-3-030-00949-6_39|pubmed = 31131377}}
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{{iacl-pub|author=A. Carass, J.L. Cuzzocreo, S. Han, C.R. Hernandez-Castillo, P.E. Rasser, M. Ganz, V. Beliveau, J. Dolz, I. Ben Ayed, C. Desrosiers, B. Thyreau, J. E. Romero, P. Coupé, J.V. Manjón, V.S. Fonov, D.L. Collins, S.H. Ying, D. Crocetti, B.A. Landman, S.H. Mostofsky, P.A. Thompson, and J.L. Prince|title=Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance imaging|jrnl = ni|number = 183:150-172|when = 2018|doi = 10.1016/j.neuroimage.2018.08.003|pubmed = 30099076}}
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{{iacl-pub|author=J. Woo, F. Xing, M. Stone, J. Green, T.G. Reese, T.J. Brady, V.J. Wedeen, J.L. Prince, and G. El Fakhri|title=Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images|journal=Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization|number=1-13|when=2018|doi=10.1080/21681163.2017.1382393}}
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{{iacl-pub|author=C Ye and J.L. Prince|title=Dictionary-based fiber orientation estimation with improved spatial consistency|jrnl=mia|number=44:41-53|when=2018|doi=10.1016/j.media.2017.11.010}}
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{{iacl-pub|author=A. Lang, A. Carass, B.M. Jedynak, S.D. Solomon, P.A. Calabresi, and J.L. Prince|title=Intensity inhomogeneity correction of SD-OCT data using macular flatspace|jrnl=mia|number=43:85-97|when=2018|doi=10.1016/j.media.2017.09.008|pubmed=29040910}}
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{{iacl-pub|author=N. Gonzalez Caldito, B. Antony, Y. He, A. Lang, J. Nguyen, A. Rothman, E. Ogbuokiri, A. Avornu, L. Balcer, E. Frohman, T.C. Frohman, P. Bhargava, J. Prince, P.A Calabresi, and S. Saidha|title=Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans|journal=Current eye research|number=43(3):415-423|when=2017|doi=10.1080/02713683.2017.1406526}}
 +
{{iacl-pub|author=D.L. Grimm, M. Stone, J. Woo, J. Lee, J.H. Hwang, G.E. Bedrosian, and J.L. Prince|title=The Effects of Palate Features and Glossectomy Surgery on/s/Production|journal=Journal of Speech, Language, and Hearing Research|number=60(12):3417-3425|when=2017}}
 +
{{iacl-pub|author=F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince|title=Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images|jrnl=tmi|number=36(10):2116-2128|year=2017}}
 +
{{iacl-pub|author=B.J. Antony, B.-J. Kim, A. Lang, A. Carass, J.L. Prince, and D.J. Zack|title=Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model|journal=PLoS ONE|number=12(8);e0181059|when=2017|doi=10.1371/journal.pone.0181059|pubmed=28817571}}
 +
{{iacl-pub|author=J. Glaister, A. Carass, T. NessAiver, J.V. Stough, S. Saidha, P.A. Calabresi, and J.L. Prince|title=Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort|jrnl=ni|number=158:430-440|when=2017|doi=10.1016/j.neuroimage.2017.06.047|pubmed=28669906}}
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{{iacl-pub|author=J. Lee, O.Y. Mian, Y. Le, H.J. Bae, E.C. Burdette, T.L. DeWeese, J.L. Prince, and D.Y. Song|title=Intraoperative Registered Ultrasound and Fluoroscopy (iRUF) for dose calculation during prostate brachytherapy: Improved accuracy compared to standard ultrasound-based dosimetry|journal=Radiother Oncol|number=124(1):61-67|when=2017|doi=10.1016/j.radonc.2017.05.018|pubmed=28647400}}
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{{iacl-pub|author=A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham|title=[[MSChallenge|Longitudinal multiple sclerosis lesion segmentation data resource]]|journal=Data in Brief|number=12:346-350|when=2017|doi=10.1016/j.dib.2017.04.004|pubmed=28491937}}
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{{iacl-pub|author=S. Ganpule, N.P. Daphalapurkar, K.T. Ramesh, A.K. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince|title=A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics|journal=J. Neurotrauma|number=34(13):2154-2166 |when=2017|doi=10.1089/neu.2016.4744|pubmed=28394205}}
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{{iacl-pub|author=L. Pereira, R.D. Airan, A. Fishman, J.J. Pillai, K. Kansal, C.U. Onyike, J.L. Prince, S.H. Ying, and H.I. Sair|title=Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)|jrnl=hbm|number=38(6):3001-3010|when=2017|doi=10.1002/hbm.23568|pubmed=28295805}}
 
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Latest revision as of 16:46, 11 August 2024

Jerry L. Prince: Journal Publications

  • Y. Liu, J. Chen, S. Wei, A. Carass, and J.L. Prince, "On Finite Difference Jacobian Computation in Deformable Image Registration", International Journal of Computer Vision, April 2024. (doi) arXiv:2212.06060 "On Finite Difference Jacobian Computation in Deformable Image Registration"
  • A. Carass, D. Greenman, B.E. Dewey, P.A. Calabresi, J.L. Prince, and D.L. Pham, "Image harmonization improves consistency of intra-rater delineations of MS lesions in heterogeneous MRI", NeuroImage: Reports, 4(1):100195, 2024. (doi)
  • C. Gao, B.A. Landman, J.L. Prince, and A. Carass, "Reproducibility evaluation of the effects of MRI defacing on brain segmentation", Journal of Medical Imaging, 10(6):064001, November 2023. (PDF) (doi)
  • L. Zuo, Y. Liu, Y. Xue, B.E. Dewey, S.W. Remedios, S.P. Hays, M. Bilgel, E.M. Mowry, S.D. Newsome, P.A. Calabresi, S.M. Resnick, J.L. Prince, and A. Carass, "HACA3: A unified approach for multi-site MR image harmonization", Computerized Medical Imaging and Graphics, 109:102285, 2023. (doi) arXiv:2212.06065 "HACA3: A unified approach for multi-site MR image harmonization"
  • R.J. Okamoto, J.D. Escarcega, A. Alshareef, A. Carass, J.L. Prince, C.L. Johnson, and P.V. Bayly, "Effect Of Direction And Frequency Of Skull Motion On Mechanical Vulnerability Of The Human Brain", J Biomech Eng., 145(11):111005, 2023. (doi)
  • Y. He, A. Carass, Y. Liu, P.A. Calabresi, S. Saidha, and J.L. Prince, "Longitudinal deep network for consistent OCT layer segmentation", Biomedical Optics Express, 14(5):1874-1893, 2023. (doi) (PubMed)
  • M. Shao, F. Xing, A. Carass, X. Liang, J. Zhuo, M. Stone, J. Woo, and J.L. Prince, "Analysis of Tongue Muscle Strain During Speech From Multimodal Magnetic Resonance Imaging", Journal of Speech, Language, and Hearing Research, 66(2):513-526, 2023. (doi) (PubMed)
  • S. Han, S.W. Remedios, M. Schär, A. Carass, and J.L. Prince, "ESPRESO: An algorithm to estimate the slice profile of a single magnetic resonance image", Magnetic Resonance Imaging, 98:1-9, 2023. (doi) (PubMed)
  • Y. Liu, A. Carass, L. Zuo, Y. He, S. Han, L. Gregori, S. Murray, R. Mishra, J. Lei, P.A. Calabresi, S. Saidha, and J.L. Prince, "Disentangled Representation Learning for OCTA Vessel Segmentation with Limited Training Data", IEEE Trans. on Medical Imaging, 41(12):3686-3698, 2022. (doi) (PubMed)
  • K. Upadhyay, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, D.L. Pham, J.L. Prince, and K.T. Ramesh, "Development and validation of subject-specific 3D human head models based on a nonlinear visco-hyperelastic constitutive framework", J. R. Soc. Interface, 19:20220561, 2022. (doi)
  • E.S. Sotirchos, E.S. Vasileiou, A.G. Filippatou, K.C. Fitzgerald, M.D. Smith, H.-N. Lord, G. Kalaitzidis, J. Lambe, A. Duval, J.L. Prince, E.M. Mowry, S. Saidha, and P.A. Calabresi, "Association of Serum Neurofilament Light Chain With Inner Retinal Layer Thinning in Multiple Sclerosis", Neurology, 99(7):e688-e697, 2022. (doi)
  • N.E. Fritz, E.M. Edwards, C. Ye, J. Prince, Z. Yang, T. Gressett, J. Keller, E. Myers, P.A. Calabresi, and K.M. Zackowski, "Cerebellar contributions to motor and cognitive control in Multiple Sclerosis", Archives of Physical Medicine and Rehabilitation, 103(8):1592-1599, 2022. (doi)
  • K. Upadhyay, D.G. Giovanis, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, M.D. Shields, and K.T. Ramesh, "Data-driven Uncertainty Quantification in Computational Human Head Models", Computer Methods in Applied Mechanics and Engineering, 398:115108, 2022. (doi)
  • X. Liu, F. Xing, M. Stone, J.L. Prince, J. Kim, G. El Fakhri, and J. Woo, "Tagged-MRI to audio synthesis with a pairwise heterogeneous deep translator", The Journal of the Acoustical Society of America, 151:A133, 2022. (doi)
  • A.G. Filippatou, E.S. Vasileiou, Y. He, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, M.A. Mealy, M. Levy, Y. Liu, J.L. Prince, E.M. Mowry, S. Saidha, P.A. Calabresi, E.S. Sotirchos, C. Fraser, and S. Mollan, "Optic Neuritis–Independent Retinal Atrophy in Neuromyelitis Optica Spectrum Disorder", Journal of Neuro-Ophthalmology, 42(1):e40-e47, 2022. (doi)
  • R. Kerestes, S. Han, S. Balachander, C. Hernandez-Castillo, J.L. Prince, J. Diedrichsen, and I.H. Harding, "A Standardized Pipeline for Examining Human Cerebellar Grey Matter Morphometry using Structural Magnetic Resonance Imaging", JoVE, 180:e63340, 2022. (doi)
  • A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, K. Upadhyay, P.V. Bayly, D.L. Pham, J.L. Prince and K.T.Ramesh, "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Brain Models", Brain Multiphysics, 100028, 2021. (doi)
  • L. Zuo, B.E. Dewey, Y. Liu, Y. He, S.D. Newsome, E.M. Mowry, S.M. Resnick, J.L. Prince, and A. Carass, "Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory", NeuroImage, 243:118569, 2021. (doi)
  • P.V. Bayly, A. Alshareef, A.K. Knutsen, K. Upadhyay, R.J. Okamoto, A. Carass, J.A. Butman, D.L. Pham, J.L. Prince, K.T. Ramesh, and C.L. Johnson, "MR imaging of human brain mechanics in vivo: new measurements to facilitate the development of computational models of brain injury", Annals of Biomedical Engineering, 49:2677-2692, 2021. (doi)
  • Y. He, A. Carass, L. Zuo, B.E. Dewey, and J.L. Prince, "Autoencoder Based Self-Supervised Test-Time Adaptation for Medical Image Analysis", Medical Image Analysis, 72:102136, 2021. (doi)
  • C Zhao, B.E. Dewey, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince, "SMORE: A Self-supervised Anti-aliasing and Super-resolution Algorithm for MRI Using Deep Learning", IEEE Trans. on Medical Imaging, 40(3):805-817, 2021. (doi)
  • Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A.Calabresi, and J.L. Prince, "Structured layer surface segmentation for retina OCT using fully convolutional regression networks", Medical Image Analysis, 68:101856, 2021. (doi)
  • A.G. Filippatou, E.S. Vasileiou, Y. He, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, M.A. Mealy, M. Levy, Y. Liu, J.L. Prince, E.M. Mowry, S. Saidha, P.A. Calabresi, and E.S. Sotirchos, "Evidence of subclinical quantitative retinal layer abnormalities in AQP4-IgG seropositive NMOSD", Multiple Sclerosis Journal, 1352458520977771, 2020. (doi)
  • A.G. Filippatou, M. Moniruzzaman, E.S. Sotirchos, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, E. Vasileiou, S. Saidha, J.L. Prince, N. Haughey, P.A. Calabresi, and P. Bhargava, "Serum ceramide levels are altered in multiple sclerosis", Multiple Sclerosis Journal, number = 1352458520971816, 2020. (doi)
  • H. Yang, J. Sun, A. Carass, C. Zhao, J. Lee, J.L. Prince, and Z. Xu, "Unsupervised MR-to-CT Synthesis using Structure-Constrained CycleGAN", IEEE Trans. on Medical Imaging, 39(12):4249-4261, 2020. (doi)
  • E.S. Sotirchos, A. Filippatou, K.C. Fitzgerald, S. Salama, S. Pardo, J. Wang, E. Ogbuokiri, N.J. Cowley, N. Pellegrini, O.C. Murphy, M.A. Mealy, J.L. Prince, M. Levy, P.A. Calabresi, S. Saidha, "Aquaporin-4 IgG seropositivity is associated with worse visual outcomes after optic neuritis than MOG-IgG seropositivity and multiple sclerosis, independent of macular ganglion cell layer thinning", Multiple Sclerosis Journal, 26(11):1360-1371, 2021. (doi)
  • A.K. Knutsen, A.D. Gomez, M. Gangolli, W.T. Wang, D. Chan, Y.C. Lu, E. Christoforou, J.L. Prince, P.V. Bayly, J.A. Butman, D.L. Pham, "In vivo estimates of axonal stretch and 3D brain deformation during mild head impact", Brain Multiphysics, 100015, 2020. (doi)
  • J Oh, M Chen, K Cybulsky, S Suthiphosuwan, E Seyman, B Dewey, M. Diener-West, P. van Zijl, J. Prince, D.S. Reich, and P.A. Calabresi, "Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis", Multiple Sclerosis Journal, 1352458520923970, 2020. (doi)
  • E.S. Sotirchos, N. Gonzalez Caldito, A. Filippatou, K.C. Fitzgerald, O.C. Murphy, J. Lambe, J. Nguyen, J. Button, E. Ogbuokiri, C.M. Crainiceanu, J.L. Prince, P.A. Calabresi, S. Saidha, and International Multiple Sclerosis Visual System (IMSVISUAL) Consortium, "Progressive multiple sclerosis is associated with faster and specific retinal layer atrophy", Annals of Neurology, 87(6):885-896, 2020. (doi)
  • O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotircho, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, S. Saidha, "Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures", Multiple Sclerosis Journal, 26(7):815-828, 2020. (doi)
  • J Lambe, A Rothman, J Prince, S Saidha, PA Calabresi, SD Newsome, "Retinal pathology occurs in stiff-person syndrome", Neurology, 94(20):e2126-e2131, 2020. (doi)
  • S. Han, Y. An, A. Carass, J.L. Prince, and S.M. Resnick, "Longitudinal analysis of regional cerebellum volumes during normal aging", NeuroImage, 220:117062, 2020. (doi) (PubMed)
  • A. Carass, S. Roy, A. Gherman, J.C. Reinhold, A. Jesson, T. Arbel, O. Maier, H. Handels, M. Ghafoorian, B. Platel, A. Birenbaum, H. Greenspan, D.L. Pham, C.M. Crainiceanu, P.A. Calabresi, J.L. Prince, W.R. Gray Roncal, R.T. Shinohara, and I. Oguz, "Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis", Nature Scientific Reports, 10:8242, 2020. (doi) (PubMed)
  • S. Han, A. Carass, Y. He, and J.L. Prince, "Automatic Cerebellum Anatomical Parcellation using U-Net with Locally Constrained Optimization", NeuroImage, 218:116819, 2020. (doi)
  • O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha, "Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures", Mult. Scler., 1352458519845116, 2019. (doi) (PubMed)
  • N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Ann Clin Transl Neurol, 2019. (doi) (PubMed)
  • J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri, "A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI", IEEE Trans. on Medical Imaging, 38(3):730-740, 2019. (doi)
  • O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha, "Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures", Mult. Scler., 1352458519845116, 2019. (doi) (PubMed)
  • N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Ann Clin Transl Neurol, 2019. (doi) (PubMed)
  • J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri, "A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI", IEEE Trans. on Medical Imaging, 38(3):730-740, 2019. (doi)
  • O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha, "Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures", Mult. Scler., 1352458519845116, 2019. (doi) (PubMed)
  • N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Ann Clin Transl Neurol, 2019. (doi) (PubMed)
  • J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri, "A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI", IEEE Trans. on Medical Imaging, 38(3):730-740, 2019. (doi)
  • D. Li, J. Wu, Y. He, X. Yao, W. Yuan, D. Chen, H.-C. Park, S. Yu, J.L. Prince, X. Li, "Parallel deep neural networks for endoscopic OCT image segmentation", Biomedical Optics Express, 10(3):1126-1135, 2019. (doi) (PubMed)
  • Y. Liu, A. Carass, Y. He, B.J. Antony, A. Filippatou, S. Saidha, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Layer boundary evolution method for macular OCT layer segmentation", Biomedical Optics Express, 10(3):1064-1080, 2019. (doi) (PubMed) (PMCID 6420297)
  • A.M. Ghanem, A.H. Hamimi, J.R. Matta, A. Carass, R.M. Elgarf, A.M. Gharib, and K.Z. Abd-Elmoniem, "Dual Level-Set Framework for 3D Coronary Artery Wall Segmentation from Coronary CT Angiography", Nature Scientific Reports, 9:47, 2019. (doi)
  • Y. He, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Retinal layer parcellation of optical coherence tomography images: Data resource for Multiple Sclerosis and Healthy Controls", Data in Brief, 22:601-604, 2019. (doi) (PubMed) (PMCID 6327073)
  • Y.-C. Lu, N.P. Daphalapurkar, A.K. Knutsen, J. Glaister, D.L. Pham, J.A. Butman, J.L. Prince, P.V. Bayly, and K.T. Ramesh, "A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium", Ann. Biomed. Eng., 2019. (doi)
  • E.S. Sotirchos, N. Gonzalez-Caldito, B.E. Dewey, K.C. Fitzgerald, J. Glaister, A. Filippatou, E. Ogbuokiri, S. Feldman, O. Kwakyi, H. Risher, C. Crainiceanu, D.L. Pham, P.C. Van Zijl, E.M. Mowry, D.S. Reich, J.L. Prince, P.A. Calabresi, and S. Saidha, "Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis", Multiple Sclerosis Journal, 2019. (doi)
  • N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al‐Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, and K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Annals of Clinical and Translational Neurology, 6(3):586-595, 2019. (doi)
  • M. Chen, J.C. Gee, J.L. Prince, and G.K. Aguirre, "2D Modeling and Correction of Fan-beam Scan Geometry in OCT", Comput Pathol Ophthalmic Med Image Anal, 11039:328-335, 2018. (doi) (PubMed)
  • A. Carass, J.L. Cuzzocreo, S. Han, C.R. Hernandez-Castillo, P.E. Rasser, M. Ganz, V. Beliveau, J. Dolz, I. Ben Ayed, C. Desrosiers, B. Thyreau, J. E. Romero, P. Coupé, J.V. Manjón, V.S. Fonov, D.L. Collins, S.H. Ying, D. Crocetti, B.A. Landman, S.H. Mostofsky, P.A. Thompson, and J.L. Prince, "Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance imaging", NeuroImage, 183:150-172, 2018. (doi) (PubMed)
  • J. Woo, F. Xing, M. Stone, J. Green, T.G. Reese, T.J. Brady, V.J. Wedeen, J.L. Prince, and G. El Fakhri, "Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-13, 2018. (doi)
  • C Ye and J.L. Prince, "Dictionary-based fiber orientation estimation with improved spatial consistency", Medical Image Analysis, 44:41-53, 2018. (doi)
  • A. Lang, A. Carass, B.M. Jedynak, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Intensity inhomogeneity correction of SD-OCT data using macular flatspace", Medical Image Analysis, 43:85-97, 2018. (doi) (PubMed)
  • N. Gonzalez Caldito, B. Antony, Y. He, A. Lang, J. Nguyen, A. Rothman, E. Ogbuokiri, A. Avornu, L. Balcer, E. Frohman, T.C. Frohman, P. Bhargava, J. Prince, P.A Calabresi, and S. Saidha, "Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans", Current eye research, 43(3):415-423, 2017. (doi)
  • D.L. Grimm, M. Stone, J. Woo, J. Lee, J.H. Hwang, G.E. Bedrosian, and J.L. Prince, "The Effects of Palate Features and Glossectomy Surgery on/s/Production", Journal of Speech, Language, and Hearing Research, 60(12):3417-3425, 2017.
  • F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince, "Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 36(10):2116-2128, .
  • B.J. Antony, B.-J. Kim, A. Lang, A. Carass, J.L. Prince, and D.J. Zack, "Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model", PLoS ONE, 12(8);e0181059, 2017. (doi) (PubMed)
  • J. Glaister, A. Carass, T. NessAiver, J.V. Stough, S. Saidha, P.A. Calabresi, and J.L. Prince, "Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort", NeuroImage, 158:430-440, 2017. (doi) (PubMed)
  • J. Lee, O.Y. Mian, Y. Le, H.J. Bae, E.C. Burdette, T.L. DeWeese, J.L. Prince, and D.Y. Song, "Intraoperative Registered Ultrasound and Fluoroscopy (iRUF) for dose calculation during prostate brachytherapy: Improved accuracy compared to standard ultrasound-based dosimetry", Radiother Oncol, 124(1):61-67, 2017. (doi) (PubMed)
  • A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham, "Longitudinal multiple sclerosis lesion segmentation data resource", Data in Brief, 12:346-350, 2017. (doi) (PubMed)
  • S. Ganpule, N.P. Daphalapurkar, K.T. Ramesh, A.K. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics", J. Neurotrauma, 34(13):2154-2166, 2017. (doi) (PubMed)
  • L. Pereira, R.D. Airan, A. Fishman, J.J. Pillai, K. Kansal, C.U. Onyike, J.L. Prince, S.H. Ying, and H.I. Sair, "Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)", Human Brain Mapping, 38(6):3001-3010, 2017. (doi) (PubMed)
  • C. Ye and J.L. Prince, "A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation", Computerized Medical Imaging and Graphics, 54:35-47, 2016. (doi) (PubMed)
  • S. Reaungamornrat, T. De Silva, A. Uneri, S. Vogt, G. Kleinszig, A.J. Khanna, J.-P. Wolinsky, J.L. Prince, and J.H. Siewerdsen, "MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery", IEEE Trans. on Medical Imaging, 35(11):2413-2424, 2016. (doi) (PubMed)
  • S. Roy, A. Carass, J. Pacheco, M. Bilgel, S.M. Resnick, J.L. Prince, and D.L. Pham, "Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation", NeuroImage: Clinical, 11:264-275, 2016. (doi)
  • Y. Huo, A.J. Plassard, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landmann, "Consistent Cortical Reconstruction and Multi-atlas Brain Segmentation", NeuroImage, 138:197-210, 2016. (doi)
  • C. Ye, J. Zhuo, R.P. Gullapalli, and J.L. Prince, "Estimation of fiber orientations using neighborhood information", Medical Image Analysis, 32:243-256, 2016. (doi)
  • M. Bilgel, J.L. Prince, D.F. Wong, S.M. Resnick, and B.M. Jedynak, "A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging", NeuroImage, 134:658-670, 2016. (doi)
  • F. Xing, J.L. Prince, and B.A. Landman, "Investigation of Bias in Continuous Medical Image Label Fusion", PloS One, 11(6):e0155862, 2016. (doi)
  • F. Xing, J. Woo, J. Lee, E.Z. Murano, M. Stone, and J.L. Prince, "Analysis of 3-D Tongue Motion From Tagged and Cine Magnetic Resonance Images", Jrnl. of Speech, Language, and Hearing Research, 59(3):468-479, 2016. (doi)
  • Z. Yang, C. Ye, J.A. Bogovic, A. Carass, B.M. Jedynak, S.H. Ying, and J.L. Prince, "Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease", NeuroImage, 127:435-444, 2016. (doi)
  • D. Coon, L. Chen, E.M. Boctor, J.L. Prince, and B. Bojovic, "Proof-of-Concept Studies for Marker-Based Ultrasound Doppler Analysis of Microvascular Anastomoses in a Modified Large Animal Model", Jrnl. of Reconstructive Microsurgery, 32(04):251-255, 2016. (doi)
  • M. Bilgel, Y. An, Y. Zhou, D.F. Wong, J.L. Prince, L. Ferrucci, and S.M. Resnick, "Individual estimates of age at detectable amyloid onset for risk factor assessment", Alzheimer's & Dementia, 12(4):373-379, 2016. (doi) (PubMed) (PMCID 4841700)
  • J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-12, 2016. (doi)
  • M. Stone, J. Woo, J. Lee, T. Poole, A. Seagraves, M. Chung, E. Kim, E.Z Murano, J.L. Prince, and S.S. Blemker, "Structure and variability in human tongue muscle anatomy", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-9, 2016. (doi)
  • B. Ibragimov, J.L. Prince, E.Z. Murano, J. Woo, M. Stone, B. Likar, F. Pernuš, and T. Vrtovec, "Segmentation of tongue muscles from super-resolution magnetic resonance images", Medical Image Analysis, 20(1):198-207, 2015. (doi)
  • J. Woo, J. Lee, E.Z. Murano, F. Xing, M. Al-Talib, M. Stone, and J.L. Prince, "A high-resolution atlas and statistical model of the vocal tract from structural MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 3(1):1-14, 2015. (doi)
  • M. Bilgel, A. Carass, S.M. Resnick, D.F. Wong, and J.L. Prince, "Deformation field correction for spatial normalization of PET images", NeuroImage, 119:152-163, 2015. (doi)
  • S. Roy, Q. He, E. Sweeney, A. Carass, D.S. Reich, J.L. Prince, and D.L. Pham, "Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation", IEEE Journal of Biomedical and Health Informatics, 19(5):1598-1609, 2015. (doi)
  • C. Ye, Z. Yang, S.H. Ying, and J.L. Prince, "Segmentation of the Cerebellar Peduncles Using a Random Forest Classifier and a Multi-object Geometric Deformable Model: Application to Spinocerebellar Ataxia Type 6", Neuroinformatics, 13(3):367-381, 2015. (doi)
  • J. Oh, E.S. Sotirchos, S. Saidha, A. Whetstone, M. Chen, S.D. Newsome, K. Zackowski, L.J. Balcer, E. Frohman, J.L. Prince, M. Diener-West, D.S. Reich, and P.A. Calabresi, "Relationships between quantitative spinal cord MRI and retinal layers in multiple sclerosis", Neurology, 84(7): 720-728, 2015. (doi)
  • B.M. Jedynak, B. Liu, A. Lang, Y. Gel, and J.L. Prince, "A computational method for computing an Alzheimer's Disease Progression Score; experiments and validation with the ADNI dataset", Neurobiology of Aging, 36(S1):S178-S184, 2015. (doi)
  • J. Woo, M. Stone, and J.L. Prince, "Multimodal Registration via Mutual Information Incorporating Geometric and Spatial Context", IEEE Trans. on Image Processing, 24(2):757-769, 2015. (doi)
  • P. Bhargava, A. Lang, O. Al-Louzi, A. Carass, J.L. Prince, P.A. Calabresi, and S. Saidha, "Applying an open-source segmentation algorithm to different OCT devices in Multiple Sclerosis patients and healthy controls: implications for clinical trials", Multiple Sclerosis International, Article ID 136295, May 2015. (doi)
  • J. Lee, J. Woo, F. Xing, E. Murano, M. Stone, and J.L. Prince, "Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI", Computerized Medical Imaging and Graphics, 38(8):714-724, 2014. (doi)
  • J. Woo, M. Stone, Y. Suo, E.Z. Murano, and J.L. Prince, "Tissue-Point Motion Tracking in the Tongue From Cine MRI and Tagged MRI", Journal of Speech, Language, and Hearing Research, 57(2):S626-S636, 2014. (doi)
  • S. Roy, W.-T. Wang, A. Carass, J.L. Prince, J.A. Butman, and D.L. Pham, "PET Attenuation Correction Using Synthetic CT from Ultrashort Echo-Time MR Imaging", Jrnl. of Nuclear Medicine, 55:1-7, 2014. (doi)
  • M. Bilgel, Y. An, A. Lang, J. Prince, L. Ferrucci, B. Jedynak, and S.M. Resnick, "Trajectories of Alzheimer disease-related cognitive measures in a longitudinal sample", Alzheimer’s & Dementia, 10(6):735–742, 2014. (doi)
  • J. Oh, M. Seigo, S. Saidha, E. Sotirchos, K. Zackowski, M. Chen, J.L. Prince, M. Diener-West, P.A. Calabresi, and D.S. Reich, "Spinal Cord Normalization in Multiple Sclerosis", Journal of NeuroImaging, 24(6):577-584, 2014. (doi)
  • N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation", Human Brain Mapping, 35(7):3385-3401, 2014. (doi)
  • M.E. Ranta, M. Chen, D. Crocetti, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky, "Automated MRI parcellation of the frontal lobe", Human Brain Mapping, 35(5):2009-2026, 2014. (doi)
  • P.A. Nyquist, M.S. Bilgel, R. Gottesman, L.R. Yanek, T.F. Moy, L.C. Becker, J. Cuzzocreo, J. Prince, D.M. Yousem, D.M. Becker, B.G. Kral, and D. Vaidya, "Extreme Deep White Matter Hyperintensity Volumes Are Associated with African American Race", Cerebrovascular Diseases, 37(4):244-250, 2014. (doi)
  • N. Kuo, E. Dehghan, A. Deguet, E. C. Burdette, G. Fichtinger, J. L. Prince, D. Y. Song, and J. Lee, "An image-guidance system for dynamic dosimetry in prostate brachytherapy using ultrasound and fluoroscopy", Medical Physics, 41(9):091712, 2014. (doi)
  • M.A.L. Bell, N.P. Kuo, D.Y. Song, J. Kang, and E.M. Boctor, "In vivo photoacoustic imaging of prostate brachytherapy seeds", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014. (doi)
  • M.A.L. Bell, N. Kuo, D.Y. Song, and E.M. Boctor, "Short-lag spatial coherence beamforming of photoacoustic images for enhanced visualization of prostate brachytherapy seeds", Biomedical Optics Express, 4(10):1964-1977, 2014. (doi)
  • M. Chen, A. Lang, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass, "Analysis of macular OCT images using deformable registration", Biomedical Optics Express, 5(7):2196-2214, 2014. (PDF) (doi)
  • A. Carass, A. Lang, M. Hauser, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Multiple-object geometric deformable model for segmentation of macular OCT", Biomedical Optics Express, 5(4):1062-1074, 2014. (PDF) (doi)
  • S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Example Based Contrast Synthesis", IEEE Trans. on Medical Imaging, 32(12):2348-2363, 2013. (PDF) (doi)
  • M. Chen, A. Carass, J. Oh, G. Nair, D.L. Pham, D.S. Reich, and J.L. Prince, "Automatic Magnetic Resonance Spinal Cord Segmentation with Topology Constraints for Variable Fields of View", NeuroImage, 83:1051-1062, 2013. (PDF) (doi)
  • A.K. Knutsen, E. Magrath, J. McEntee, J.L. Prince, P. Bayly, J. Butman, and D.L. Pham, "Improved measurement of Brain Deformation during a Mild Acceleration using Tagged MRI", Journal of Neurotrauma, 30(15):A114-A115, August 2013. (doi)
  • J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying, "Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters", NeuroImage, 64(1):616-629, 2013. (PDF) (doi) (PubMed)
  • J.A. Bogovic, J.L. Prince, and P.-L. Bazin, "A Multiple Object Geometric Deformable Model for Image Segmentation", Computer Vision and Image Understanding, 117(2):145-157, 2013. (PDF) (doi) (PubMed)
  • D. Song, Y. Le, J. Lee, N. Kuo, A. Robinson, A. Deguet, E. Burdette, G. Fichtinger, and J.L. Prince, "Dynamic Dosimetry Using Ultrasound-Fluoroscopy Registration Identifies Cold Spots Intraoperatively During LDR Prostate Brachytherapy", International Journal of Radiation Oncology Biology Physics, 87(2):S379, October 2013. (doi)
  • A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Retinal layer segmentation of macular OCT images using boundary classification", Biomedical Optics Express, 4(7):1133-1152, 2013. (PDF) (doi) (PMCID 3704094)
  • B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "System for Integrated Neuroimaging Analysis and Processing of Structure", Neuroinformatics, 11(1):91-103, 2012. (PDF) (doi) (PubMed)
  • P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross, "Brain metabolite alterations and cognitive dysfunction in early Huntington's disease", Movement Disorders, 27(7):895-902, June 2012. (doi) (PubMed)
  • S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Consistent Segmentation using a Rician Classifier", Medical Image Analysis, 16(2):524-535, 2012. (PDF) (doi) (PubMed)
  • B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI", NeuroImage, 59(3):2175–2186, 2012. (PDF) (doi)
  • B.A. Landman, A.L. Asman, A.G. Scoggins, J.A. Bogovic, F. Xing, and J.L. Prince, "Robust Statistical Fusion of Image Labels", IEEE Trans. on Medical Imaging, 31(2):512-522, February 2012. (PDF) (doi) (PubMed) (PMCID 3262958)
  • B.A. Landman, A.J. Asman, A.G. Scoggins, J.A. Bogovic, J.A. Stein, and J.L. Prince, "Foibles, follies, and fusion: Web-based collaboration for medical image labelling", NeuroImage, 59(1):530–539, January 2012. (PDF) (doi) (PubMed)
  • N. Kuo, H.J. Kang, D.Y. Song, J.U. Kang, and E.M. Boctor, "Real-time Photoacoustic Imaging of Prostate Brachytherapy Seeds Using a Clinical Ultrasound System", Journal of Biomedical Optics, 17(6):066005, 2012. (doi)
  • E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, Y. Le, E.C. Burdette, D.Y. Song, J.L. Prince, and G. Fichtinger, "Ultrasound-Fluoroscopy Registration for Prostate Brachytherapy Dosimetry", Medical Image Analysis, 16(7):1347-1358, 2012. (PDF) (doi)
  • J. Lee, J.W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A.J. Khanna, J.L. Prince, and J.H. Siewerdsen, "Volume-of-Change Cone-Beam CT for Image-Guided Surgery", Physics in Medicine and Biology, 57(15):64-77, 2012. (PDF) (doi)
  • N. Kuo, A. Deguet, D.Y. Song, E.C. Burdette, J.L. Prince, and J. Lee, "Automatic segmentation of radiographic fiducial and seeds from X-ray images in prostate brachytherapy", Medical Engineering & Physics, 34(1):64-77, 2012. (PDF) (doi) (PubMed) (PMCID 3209498)
  • B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee, A.W. Toga, J.L. Prince, and S.H. Ying, "MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2", The Cerebellum, 1-8, 2011. (doi) (PubMed)
  • P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham, "Direct segmentation of the major white matter tracts in diffusion tensor images", NeuroImage, 58(2):458-468, September 2011. (PDF) (doi) (PubMed)
  • A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis", NeuroImage, 56(4):1982-1992, June 2011. (doi) (PubMed) (PMCID 3105165)
  • H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori, "A framework on surface-based connectivity quantification for the human brain", Journal of Neuroscience Methods, 197(2):324-332, April 2011. (PDF) (doi) (PubMed) (PMCID 3081907)
  • B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl, "Multi-parametric neuroimaging reproducibility: A 3-T resource study", NeuroImage, 54(4):2854–2866, 2011. (PDF) (doi) (PubMed) (PMCID 3020263)
  • A.J. Asman, A.G. Scoggins, J.L. Prince, and B.A. Landman, "Foibles, Follies, and Fusion: Assessment of Statistical Label Fusion Techniques for Web-Based Collaborations using Minimal Training", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi) (PubMed) (PMCID 3083117)
  • J. Lee, N. Kuo, A. Deguet, E. Dehghan, D.Y. Song, E.C. Burdette, and J.L. Prince, "Intraoperative 3-D reconstruction of prostate brachytherapy implants with automatic pose correction", Physics in Medicine and Biology, 56(15):5011-5027, 2011. (PDF) (doi) (PubMed)
  • G.J. Gang*, J. Lee*, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J.H. Siewerdsen, "Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance", Medical Physics, 38(4):1754-1768, 2011, *equal contribution. (PDF) (doi) (PubMed) (PMCID 3069989)
  • J.W. Stayman, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen, "Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi)
  • O. Sadowsky, J. Lee, E.G. Sutter, S.J. Wall, J.L. Prince, and R.H. Taylor, "Hybrid cone-beam tomographic reconstruction: Incorporation of prior anatomical models to compensate for missing data", IEEE Trans. on Medical Imaging, 30(1):69-83, January 2011. (PDF) (doi) (PubMed)
  • J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "REDMAPS: Reduced-dimensionality matching for prostate brachytherapy seed reconstruction", IEEE Trans. on Medical Imaging, 30(1):38-51, January 2011. (PDF) (doi) (PubMed) (PMCID 3072797)
  • X. Liu and J.L. Prince, "Shortest path refinement for motion estimation from tagged MR images", IEEE Trans. on Medical Imaging, 29(8):1560-1572, August 2010. (PDF) (doi) (PubMed)
  • M. Stone, X. Liu, H. Chen, and J.L. Prince, "A preliminary application of principal components and cluster analysis to internal tongue deformation patterns", Computer Methods in Biomechanics and Biomedical Engineering, 13(4):493-503, August 2010. (PDF) (doi) (PubMed) (PMCID 3046779)
  • E.Z. Murano, H. Shinagawa, J. Zhuo, R.P. Gullapalli, R.A. Ord, J.L. Prince, and M. Stone, "Application of diffusion tensor imaging after glossectomy", Otolaryngology - Head and Neck Surgery, 143(2):304-306, August 2010. (PDF) (doi) (PubMed) (PMCID 2924629)
  • H.K. Agarwal, J.L. Prince, and K.Z. Abd-Elmoniem, "Total removal of unwanted harmonic peaks (TruHARP) MRI for single breath-hold high-resolution myocardial motion and strain quantification", Magnetic Resonance in Medicine, 64(2):574-585, August 2010. (PDF) (doi) (PubMed)
  • M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince, and S.M. Resnick, "Longitudinal changes in cortical thickness associated with normal aging", NeuroImage, 52(4):1215-1223, October 2010. (PDF) (doi) (PubMed) (PMCID 2910226)
  • B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman, "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software", Neuroinformatics, 8:5-17, March 2010. (doi) (PubMed) (PMCID 2860951)
  • N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham, "A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions", NeuroImage, 49(2):1524-1535, January 2010. (doi) (PubMed) (PMCID 2806481)
  • L.M. Ellingsen, G. Chintalapani, R.H. Taylor, and J.L. Prince, "Robust deformable image registration using prior shape information for atlas to patient registration", Comput. Med. Imaging Graph, 34(1):79-90, January 2010. (PDF) (doi) (PubMed)
  • G.J. Gang, D.J. Tward, J. Lee, and J.H. Siewerdsen, "Anatomical background and the generalized detectability dex for tomosynthesis and cone-beam CT", Medical Physics, 37(5):1948-1965, May 2010. (doi) (PubMed) (PMCID 2862054)
  • J. Lee, X. Liu, A.K. Jain, D.Y. Song, E.C. Burdette, J.L. Prince, and G. Fichtinger, "Prostate Brachytherapy Seed Reconstruction with Gaussian Blurring and Optimal Coverage Cost", IEEE Trans. on Medical Imaging, 28(12):1955-1968, December 2009. (doi) (PubMed)
  • K.R. Rocha, G. Sundaramoorthi, A.J. Yezzi, and J.L. Prince, "3D Topology Preserving Flows for Viewpoint-Based Cortical Unfolding", Int. J. Comput. Vis., 85(3):223-236, December 2009. (doi) (PubMed) (PMCID 2786089)
  • S.H. Ying, B.A. Landman, S. Chowdhury, A.H. Sinofsky, A. Gambini, S. Mori, D.S. Zee, and J.L. Prince, "Orthogonal diffusion-weighted MRI measures distinguish region-specific degeneration in cerebellar ataxia subtypes", J. Neurol., 256(11):1939-1942, November 2009. (doi) (PubMed) (PMCID 2789274)
  • B.A. Landman, P.-L. Bazin, S.A. Smith, and J.L. Prince, "Robust Estimation of Spatially Variable Noise Fields", Magnetic Resonance in Medicine, 62(2):500-509, August 2009. (doi) (PubMed) (PMCID 2806192)
  • L.M. Ellingsen and J.L. Prince, "Mjolnir:Extending HAMMER Using a Diffusion Transformation Model and Histogram Equalization for Deformable Image Registration", Int. J. Biomed. Imaging, 2009:281615, August 2009. (doi) (PubMed) (PMCID 2724857)
  • X. Han, C. Xu, and J.L. Prince, "A Moving Grid Framework for Geometric Deformable Models", Int. J. Comput. Vis., 84(1):63-79, August 2009. (doi) (PubMed) (PMCID 2784682)
  • B.A. Landman, P.-L. Bazin, and J.L. Prince, "Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging", Journal of Magnetic Resonance Imaging, 27(6):741-751, July 2009. (doi) (PubMed) (PMCID 2733233)
  • Y. Bai, X. Han, and J.L. Prince, "Digital Topology on Adaptive Octree Grids", J. Math Imaging Vis., 34(2):165-184, June 2009. (doi) (PubMed) (PMCID 2805029)
  • S. Sampath, N.F. Osman, and J.L. Prince, "A combined harmonic phase and strain-encoded pulse sequence for measuring three-dimensional strain", Magnetic Resonance Imaging, 27(1):55-61, January 2009. (doi) (PubMed) (PMCID 2599804)
  • K.Z. Abd-Elmoniem, M. Stuber, and J.L. Prince, "Direct Three-Dimensional Myocardial Strain Tensor Quantification and Tracking using zHARP", Medical Image Analysis, 12(6):778-786, December 2008. (doi) (PubMed) (PMCID 2590624)
  • D. Tosun and J.L. Prince, "A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces", IEEE Trans. on Medical Imaging, 27(12):1739-1753, December 2008. (doi) (PubMed) (PMCID 2597639)
  • B.A. Landman, J. Farrell, H. Huang, J.L. Prince, and S. Mori, "Diffusion Tensor Imaging at Low SNR:Non-monotonic behaviors of tensor contrasts", Magnetic Resonance Imaging, 26(6):790-800, July 2008. (doi) (PubMed) (PMCID 2583784)
  • K.Z. Abd-Elmoniem, S. Sampath, N.F. Osman, and J.L. Prince, "Real-Time Monitoring of Cardiac Regional Function Using FastHARP MRI and Region-of-Interest Reconstruction", IEEE Trans. on Biomedical Engineering, 54(9):1650-1656, September 2007. (doi) (PubMed)
  • J.A. Farrell, B.A. Landman, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori, "Effects of SNR on the Accuracy and Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T", Journal of Magnetic Resonance Imaging, 26(3):756-767, August 2007. (PubMed)
  • B.A. Landman, J.A. Farrell, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori, "Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T", NeuroImage, 36(4):1123-1138, July 2007.
  • K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber, "Three-Dimensional Magnetic Resonance Myocardial Motion Tracking From a Single Image Plane", Magnetic Resonance in Medicine, 58(1):92-102, July 2007. (doi) (PubMed)
  • K. Rocha, A. Yezzi, and J.L. Prince, "A Hybrid Eulerian-Lagrangian Approach for Thickness, Correspondence, and Gridding of Annular Tissues", IEEE Transactions on Image Processing, 16(3):636-648, March 2007. (doi) (PubMed)
  • S. Sampath and J.L. Prince, "Automatic 3D Tracking of Cardiac Material Markers Using Slice-Following and Harmonic Phase MRI", Magnetic Resonance Imaging, 25(2):197-208, February 2007. (doi)
  • V. Parthasarathy, J.L. Prince, M. Stone, E. Murano, and M. NessAiver, "Measuring tongue motion from tagged Cine-MRI using harmonic phase (HARP) processing", Journal of Acoustic Society of America, 121(1):491-504, 2007. (PubMed)
  • X. Han, C. Xu, and J.L. Prince, "Fast numerical scheme for gradient vector flow computation using a multigrid method", IET Image Processing, 1(1):48-55, March 2007. (doi)
  • M.E. Rettmann, M.A. Kraut, J.L. Prince, and S.M. Resnick, "Cross-Sectional and Longitudinal Analyses of Anatomical Sulcal Changes Associated with Aging", Cerebral Cortex, 16(11):1584-1594, November 2006. (doi)
  • D. Tosun, M.E. Rettmann, D.Q. Naiman, S.M. Resnick, M.A. Kraut, J.L. Prince, "Cortical Reconstruction Using Implicit Surface Evolution: Accuracy and Precision Analysis", NeuroImage, 29(3):838-852, February 2006. (doi)
  • V. Parthasarathy, M. Stone, and J.L. Prince, "Spatiotemporal Visualization of the Tongue Surface using Ultrasound and Kriging (SURFACES)", Clinical Linguistics and Phonetics, 19(6/7):529-544, September - November 2005. (PubMed)
  • L. Pan, J.L. Prince, J.A.C. Lima, and N.F. Osman, "Fast tracking of cardiac motion using 3D-HARP", IEEE Trans. on Biomedical Engineering, 52(8):1425-1435, August 2005. (doi) (PubMed)
  • M.E. Rettmann, D. Tosun, X. Tao, S.M. Resnick, and J.L. Prince, "Program for the Assisted Labeling of Sulcal Regions (PALS): Description and Reliability", NeuroImage, 24(2):398–416, 15 January 2005. (doi)
  • J. Garot, J.A. Lima, B.L. Gerber, S. Sampath, K.C. Wu, D.A. Bluemke, J.L. Prince, N.F. Osman, "Spatially resolved imaging of myocardial function with strain-encoded MR: comparison with delayed contrast-enhanced MR imaging after myocardial infarction", Radiology, 233(2):596-602, November 2004. (doi)
  • X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J. L. Prince, "CRUISE: Cortical Reconstruction Using Implicit Surface Evolution", NeuroImage, 23(3):997–1012, November 2004. (doi)
  • D. Tosun, M.E. Rettmann, X. Han, X. Tao, C. Xu, S.M. Resnick, D. Pham, and J.L. Prince, "Cortical Surface Segmentation and Mapping", NeuroImage, 23:S108–S118, 2004. (doi) (PubMed)
  • D. Tosun and J.L. Prince, "Mapping Techniques for Aligning Sulci Across Multiple Brains", Medical Image Analysis, 8:295–309, 2004. (doi)
  • N.F. Osman and J.L. Prince, "Regenerating MR tagged images using harmonic phase (HARP) methods", IEEE Trans. on Biomedical Engineering, 51(8):1428–1433, August 2004. (doi) (PubMed)
  • A. Yezzi and J.L. Prince, "An Eulerian PDE approach for computing tissue thickness", IEEE Trans. on Medical Imaging, 22(10):1332–1339, October 2003. (doi) (PubMed)
  • M. NessAiver and J.L. Prince, "Magnitude Image CSPAMM Reconstruction (MICSR)", Magnetic Resonance in Medicine, 50(2):331–342, August 2003. (doi)
  • S. Sampath, J.A. Derbyshire, E. Atalar, N.F. Osman, and J.L. Prince, "Real-Time Imaging of Two-dimensional Cardiac Strain Using a Harmonic Phase Magnetic Resonance Imaging (HARP-MRI) Pulse Sequence", Magnetic Resonance in Medicine, 50(1):154–163, July 2003. (doi) (PubMed)
  • X. Han, C. Xu, and J.L. Prince, "A topology preserving level set method for geometric deformable models", IEEE Trans. on Pattern Analysis Machine Intelligence, 25(6):755-768, June 2003. (doi)
  • D.L. Kraitchman, S. Sampath, E. Castillo, J.A. Derbyshire, D.A. Bluemke, B.L. Gerber, J.L. Prince, N.F. Osman, "Quantitative Ischemia Detection During Cardiac Magnetic Resonance Stress Testing Using Real-time FastHARP", Circulation, 107(15):2025-2030, 22 April 2003. (doi)
  • W.S. Kerwin and J.L. Prince, "Kriging Filters for Space Time Interpolation", Advances in Imaging and Electron Physics, 124:139-193, November 2002.
  • X. Tao, J.L. Prince, and C. Davatzikos, "Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain", IEEE Trans. on Medical Imaging, 21(5):513-524, May 2002. (doi) (PubMed)
  • X. Han, C. Xu, U. Braga-Neto, and J.L. Prince, "Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm", IEEE Trans. on Medical Imaging, 21(2):109-121, February 2002. (doi) (PubMed)
  • M.E. Rettman, X. Han, and J.L. Prince, "Automated Sulcal Segmentation Using Watersheds on the Cortical Surface", NeuroImage, 15(2):329-344, February 2002. (doi) (PubMed)
  • N.F. Osman, S. Sampath, E. Atalar, and J.L. Prince, "Imaging longitudinal cardiac strain on short-axis images using strain-encoded MRI", Magnetic Resonance in Medicine, 46(2):324-334, 2001. (doi) (PubMed)
  • J. Garot, D.A. Bluemke, N.F. Osman, C.E. Rochitte, E.A. Zerhouni, J.L. Prince, and J.C. Lima, "Transmural Contractile Reserve After Reperfused Myocardial Infarction in Dogs", Journal of the American College of Cardiology, 36(7):2339-2346, 2000.
  • W.S. Kerwin and J.L. Prince, "On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs", Automatica, 36(9):1381-1383, September 2000. (doi)
  • N.F. Osman and J.L. Prince, "Visualizing myocardial function using HARP MRI", Physics in Medicine and Biology, 45(6):1665-1682, June 2000. (doi) (PubMed)
  • N.F. Osman, E.R. McVeigh, and J.L. Prince, "Imaging heart motion using harmonic phase MRI", IEEE Trans. on Medical Imaging, 19(3):186-202, March 2000. (doi) (PubMed)
  • J. Garot, D.A. Bluemke, N.F. Osman, C.E. Rochitte, E.R. McVeigh, E.A. Zerhouni, J.L. Prince, and J.A. Lima, "Fast Determination of Regional Myocardial Strain Fields from Tagged Cardiac Images Using Harmonic Phase (HARP) MRI", Circulation, 101(9):981-988, Mar 7, 2000. (PubMed)
  • W.S. Kerwin and J.L. Prince, "A k-space Analysis of MR Tagging", Journal of Magnetic Resonance, 142(2):313-322, 2000. (doi)
  • J.L. Prince, S.N. Gupta, and N.F. Osman, "Bandpass Optical Flow For Tagged MRI", Medical Physics, 27(1):108-118, January 2000. (PubMed)
  • N.F. Osman, W.S. Kerwin, E.R. McVeigh, and J.L. Prince, "Cardiac Motion Tracking Using CINE Harmonic Phase (HARP) Magnetic Resonance Imaging", Magnetic Resonance in Medicine, 42(6):1048-1060, 1999. (PubMed)
  • D.L. Pham and J.L. Prince, "Adaptive Fuzzy Segmentation of Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 18(9):737-752, September 1999. (doi) (PubMed)
  • W. S. Kerwin and J.L. Prince, "The Kriging Update Model and Recursive Space-Time Function Estimation", IEEE Trans. on Signal Processing, 47(11):2942-2952, November 1999. (doi)
  • C. Xu, D. L. Pham, M.E. Rettmann, D. N. Yu, and J.L. Prince, "Reconstruction of the human cerebral cortex from magnetic resonance images", IEEE Trans. on Medical Imaging, 18(6):467-480, June 1999. (doi) (PubMed)
  • W.S. Kerwin and J.L. Prince, "Tracking MR tag surfaces using a spatio-temporal filter and interpolator", Int'l Journal of Imaging Systems and Technology, 10(2):128-142, March 1999.
  • D.L. Pham and J.L. Prince, "An Adaptive Fuzzy C-Means Algorithm for Image Segmentation in the Presence of Intensity Inhomogeneities", Pattern Recognition Letters, 20(1):57-68, 15 January, 1999. (doi)
  • C.A. Davatzikos and J.L. Prince, "Convexity Analysis of Active Contour Algorithms", Image and Vision Computing, 17(1):27-36, January 1999.
  • W. Kerwin and J.L. Prince, "Cardiac Material Markers from Tagged MR Images", Medical Image Analysis, 2(4):339-353, 1998. (doi) (PubMed)
  • C. Xu and J.L. Prince, "Generalized Gradient Vector Flow External Forces for Active Contours", Signal Processing, 71(2):131-139, December 1998. (doi)
  • C. Xu and J.L. Prince, "Snakes, shapes, and gradient vector flow", IEEE Trans. on Image Processing, 7(3):359-369, March 1998. (doi) (PubMed)
  • N. Osman and J.L. Prince, "3-D Vector Tomography on Bounded Domains", Inverse Problems, 14(1):185-196, February 1998. (doi)
  • D.L. Pham, J.L. Prince, A.P. Dagher, and C. Xu, "An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging", International Journal of Pattern Recognition and Artificial Intelligence, 11(8):1189-1211, December 1997.
  • J.M. Links, J.L. Prince, and S.N. Gupta, "A Vector Wiener Filter for Dual-Radionuclide Imaging", IEEE Trans. on Medical Imaging, 15(5):700-709, October 1996. (doi)
  • J.L. Prince, "Convolution Backprojection Formulas for 3-D Vector Tomography with Application to MRI", IEEE Trans. on Image Processing, 5(10):1462-1472, October 1996. (doi)
  • C.A. Davatzikos, J.L. Prince, and R.N. Bryan, "Image Registration Based on Boundary Mapping", IEEE Trans. on Medical Imaging, 15(1):112-115, February 1996. (doi)
  • S.N. Gupta, and J.L. Prince, "Stochastic Models for DIV-CURL Optical Flow Methods", IEEE Signal Processing Letters, 3(2):32-34, February 1996. (doi)
  • C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan, "A Computerized Approach for Morphological Analysis of the Corpus Callosum", Journal of Computer Assisted Tomography, 20(1):88-97, January 1996.
  • T.S. Denney Jr. and J.L. Prince, "Reconstruction of 3D left ventricular motion from planar tagged cardiac MR Images: An estimation theoretic approach", IEEE Trans. on Medical Imaging, 4(4):625-635, December 1995. (doi)
  • J.L. Prince, Q. Tan, and D. Pham, "Optimization of MR pulse sequences for Bayesian image segmentation", Medical Physics, 22(10):1651-1656, October 1995. (PubMed)
  • T.S. Denney, Jr., and J.L. Prince, "A frequency domain performance analysis of Horn and Schunck's optical flow algorithm for deformable motion", IEEE Trans. on Image Processing, 4(9):1324-1328, September 1995. (doi)
  • C.A. Davatzikos and J.L. Prince, "An Active Contour Model for Mapping the Cortex", IEEE Trans. on Medical Imaging, 14(1):65-80, March 1995. (doi)
  • J.L. Prince, "Tomographic Reconstruction of 3-D Vector Fields Using Inner Product Probes", IEEE Trans. on Image Processing, 3(2):216-219, March 1994. (doi)
  • T.S. Denney, Jr. and J.L. Prince, "Optimal brightness functions for optical flow estimation of deformable motion", IEEE Trans. on Image Processing, 3(2):178-191, March 1994. (doi)
  • M.A. Guttman, J.L. Prince, and E.R. McVeigh, "Tag and contour detection in tagged MR images of the left ventricle", IEEE Trans. on Medical Imaging, 13(1):74-88, March 1994. (doi)
  • J.L. Prince and A.S. Willsky, "Hierarchical reconstruction using geometry and sinogram restoration", IEEE Trans. on Image Processing, 2(3):401-416, July 1993. (doi)
  • H.W. Muller-Gartner, J.M. Links, J.L. Prince, R.N. Bryan, E.R. McVeigh, J.P.Leal, C. Davatzikos, J.J. Frost, "Measurement of Tracer Concentration in Brain Gray Matter Using Positron Emission Tomography: MRI-Based Correction for Partial Volume Effects", J. Cerebral Blood Flow and Metabolism, 12(4):571-583, 1992.
  • J.L. Prince and E.R. McVeigh, "Motion estimation from tagged MR image sequences", IEEE Trans. on Medical Imaging, 11(2):238-249, June 1992. (doi)
  • J.L. Prince and A.S. Willsky, "Convex Set Reconstruction Using Prior Shape Information", CVGIP: Graphical Models and Image Processing, 53(5):413-427, September 1991.
  • J.L. Prince and A.S. Willsky, "Constrained Sinogram Restoration for Limited-Angle Tomography", Optical Engineering, 29:534-544, May 1990.
  • J.L. Prince and A.S. Willsky, "Reconstructing convex shapes from support line measurements", IEEE Trans. on Pattern Analysis Machine Intelligence, 12(4):377-389, April 1990. (doi)
  • J.L. Prince and A.S. Willsky, "A Geometric Projection-Space Reconstruction Algorithm", Linear Algebra and its Applications, 130:151-191, March 1990.


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