Publications

Publications

2017

N. Gonzalez Caldito, B. Antony, Y. He, A. Lang, J. Nguyen, A. Rothman, E. Ogbuokiri, A. Avornu, L. Balcer, E. Frohman, T.C. Frohman, P. Bhargava, J. Prince, P.A Calabresi, and S. Saidha, "Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans", Current eye research, 43(3):415-423, 2017.
D.L. Grimm, M. Stone, J. Woo, J. Lee, J.H. Hwang, G.E. Bedrosian, and J.L. Prince, "The Effects of Palate Features and Glossectomy Surgery on /s/ Production", Journal of Speech, Language, and Hearing Research, 60(12):3417-3425, 2017. (PubMed)
A.D. Gomez, A. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "Group Patterns of Acceleration-Induced Brain Deformation in Vivo", Computational Biomechanics for Medicine Workshop XII at the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10–14, 2017.
I. Oguz, A. Carass, D.L. Pham, S. Roy, N. Subbana, P.A. Calabresi, P.A. Yushkevich, R.T. Shinohara, and J.L. Prince, "Dice overlap measures for multiple objects: Application to lesion segmentation", Brain Lesion Workshop, in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10–14, 2017. (PubMed)
A. Carass, M. Shao, X. Li, B. Tran, B.E. Dewey, A.M. Blitz, S. Roy, J.L. Prince, and L.M. Ellingsen, "Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients", 3^rd International Workshop on Patch-based Techniques in Medical Imaging in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10–14, 2017. (PubMed)
J. Glaister, A. Carass, D.L. Pham, J.A. Butman, and J.L. Prince, "Falx Cerebri Segmentation via Multiatlas Boundary Fusion", 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10–14, 2017. (PubMed)
Y. He, A. Carass, Y. Yun, C. Zhao, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Towards topological correct segmentation of macular OCT from cascaded FCNs", 4^th Ophthalmic Medical Image Analysis Workshop in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10–14, 2017.
C. Zhao, A. Carass, J. Lee, Y. He, and J.L. Prince, "Whole brain segmentation and labeling from CT using synthetic MR images", Eighth International Workshop on Machine Learning in Medical Imaging (MLMI 2017), Quebec, Canada, September 10, 2017.
C. Zhao, A. Carass, A. Jog, J. Lee, and J.L. Prince, "A super-voxel based random forest synthesis framework for bidirectional MR/CT synthesis", Simulation and Synthesis in Medical Imaging (SASHIMI 2017) in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10–14, 2017.
F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince, "Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images", IEEE Trans. Med. Imag., 36(10):2116-2128, 2017. (PubMed)
B.J. Antony, B.-J. Kim, A. Lang, A. Carass, J.L. Prince, and D.J. Zack, "Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model", PLoS ONE, 12(8):e0181059, 2017. (PubMed)
A.D. Gomez, A. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "Full-Field 4D Measurements of Acceleration-Induced Deformation in the Living Human Brain", 14^th US National Congress on Computational Mechanics (USNCCM), Montreal, Canada, July 2017.
J. Glaister, A. Carass, T. NessAiver, J.V. Stough, S. Saidha, P.A. Calabresi, and J.L. Prince, "Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort", NeuroImage, 158:430-440, 2017. (PubMed)
J. Lee, O.Y. Mian, Y. Le, H.J. Bae, E.C. Burdette, T.L. DeWeese, J.L. Prince, and D.Y. Song, "Intraoperative Registered Ultrasound and Fluoroscopy (iRUF) for dose calculation during prostate brachytherapy: Improved accuracy compared to standard ultrasound-based dosimetry", Radiother Oncol, 124(1):61-67, 2017. (PubMed)
A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham, "Longitudinal multiple sclerosis lesion segmentation data resource", Data in Brief, 12:346-350, 2017. (PubMed)
S. Ganpule, N.P. Daphalapurkar, K.T. Ramesh, A.K. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics", J. Neurotrauma, 34(13):2154-2166, 2017. (PubMed)
L. Pereira, R.D. Airan, A. Fishman, J.J. Pillai, K. Kansal, C.U. Onyike, J.L. Prince, S.H. Ying, and H.I. Sair, "Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)", Human Brain Mapping, 38(6):3001-3010, 2017. (PubMed)
F. Xing, J.L. Prince, M.L. Stone, V.J. Wedeen, G. El Fakhri, and J. Woo, "A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
B.E. Dewey, A. Carass, A.M. Blitz, and J.L. Prince, "Efficient Multi-Atlas Registration using an Intermediate Template Image", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
J.A. Ramsey, A.D. Gomez, and J.L. Prince, "Test-suite for image-based motion estimation of the brain and tongue", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
B.J. Antony, A. Carass, A. Lang, B.-J. Kim, D.J. Zack, and J.L. Prince, "Longitudinal Analysis of Mouse SDOCT Volumes", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
J. Glaister, A. Carass, D. L. Pham, and J.L. Prince, "Automatic falx cerebri and tentorium cerebelli segmentation from Magnetic Resonance Images", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
A. Lang, A. Carass, A.K. Bittner, H.S. Ying, and J.L. Prince, "Improving graph-based OCT segmentation for severe pathology in Retinitis Pigmentosa patients", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
J. Lee, A. Carass, A. Jog, C. Zhao, and J. L. Prince, "Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
Y. Yun, A. Carass, A. Lang, J.L. Prince, and B.J. Antony, "Collaborative SDOCT Segmentation and Analysis Software", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11–16, 2017. (PubMed)
A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, F. Prados, C.H. Sudre, M.J. Cardoso, N. Cawley, O. Ciccarelli, C.A.M. Wheeler-Kingshott, S. Ourselin, L. Catanese, H. Deshpande, P. Maurel, O. Commowick, C. Barillot, X. Tomas-Fernandez, S.K. Warfield, S. Vaidya, A. Chunduru, R. Muthuganapathy, G. Krishnamurthi, A. Jesson, T. Arbel, O. Maier, H. Handels, L.O. Iheme, D. Unay, S. Jain, D.M. Sima, D. Smeets, M. Ghafoorian, B. Platel, A. Birenbaum, H. Greenspan, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham, "Longitudinal Multiple Sclerosis Lesion Segmentation: Resource and Challenge", NeuroImage, 148(C):77-102, 2017. (PubMed)
K. Kansal, Z. Yang, A.M. Fishman, H.I. Sair, S.H. Ying, B.M. Jedynak, J.L. Prince, C.U. Onyike, "Structural cerebellar correlates of cognitive and motor dysfunctions in cerebellar degeneration", Brain, 140(3):707-720, 2017. (PubMed)
M. Chen, A. Carass, A. Jog, J. Lee, S. Roy, and J.L. Prince, "Cross contrast multi-channel image registration using image synthesis for MR brain images", Medical Image Analysis, 36(2):2-14, 2017. (PubMed)
C Ye and J.L. Prince, "Probabilistic tractography using Lasso bootstrap", Medical Image Analysis, 35:544-553, 2017. (PubMed)
A. Jog, A. Carass, S. Roy, D.L. Pham, and J.L. Prince, "Random Forest Regression for Magnetic Resonance Image Synthesis", Medical Image Analysis, 35:475-488, 2017. (PubMed)

2016

C. Ye and J.L. Prince, "A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation", Computerized Medical Imaging and Graphics, 54:35-47, 2016. (PubMed)
S. Reaungamornrat, T. De Silva, A. Uneri, S. Vogt, G. Kleinszig, A.J. Khanna, J.-P. Wolinsky, J.L. Prince, and J.H. Siewerdsen, "MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery", IEEE Trans. Med. Imag., 35(11):2413-2424, 2016. (PubMed)
S. Roy, Y.-Y. Chou, A. Jog, J. Butman, and D.L. Pham, "Patch Based Synthesis of Whole Head MR Images: Application to EPI Distortion Correction", SASHIMI: Simulation and Synthesis in Medical Imaging Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17–21, 2016.
A. Jog, A. Carass, and J.L. Prince, "Self Super-resolution for Magnetic Resonance Images", 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17–21, 2016.
A.D. Gomez, F. Xing, D. Chan, D.L. Pham, P. Bayly, and J.L. Prince, "Motion Estimation with Finite-Element Biomechanical Models and Tracking Constraints from Tagged MRI", Computational Biomechanics for Medicine XI Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17–21, 2016.
F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince, "Incompressible Phase Registration for Motion Estimation from Tagged Magnetic Resonance Images", Reconstruction and Analysis of Moving Body Organs‎ (RAMBO 2016) Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17–21, 2016.
S. Roy, A. Carass, J. Pacheco, M. Bilgel, S.M. Resnick, J.L. Prince, and D.L. Pham, "Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation", NeuroImage: Clinical, 11:264-275, 2016.
Y. Huo, A.J. Plassard, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landmann, "Consistent Cortical Reconstruction and Multi-atlas Brain Segmentation", NeuroImage, 138:197-210, 2016.
C. Ye, J. Zhuo, R.P. Gullapalli, and J.L. Prince, "Estimation of fiber orientations using neighborhood information", Medical Image Analysis, 32:243-256, 2016.
M. Bilgel, J.L. Prince, D.F. Wong, S.M. Resnick, and B.M. Jedynak, "A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging", NeuroImage, 134:658-670, 2016.
F. Xing, J.L. Prince, and B.A. Landman, "Investigation of Bias in Continuous Medical Image Label Fusion", PLoS ONE, 11(6):e0155862, 2016.
F. Xing, J. Woo, J. Lee, E.Z. Murano, M. Stone, and J.L. Prince, "Analysis of 3-D Tongue Motion From Tagged and Cine Magnetic Resonance Images", Jrnl. of Speech, Language, and Hearing Research, 59(3):468-479, 2016.
Z. Yang, C. Ye, J.A. Bogovic, A. Carass, B.M. Jedynak, S.H. Ying, and J.L. Prince, "Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease", NeuroImage, 127:435-444, 2016.
E. Dehghan, Y. Le, J. Lee, D. Song, G. Fichtinger, and J.L. Prince, "CT and MRI Fusion for Postimplant Prostate Brachytherapy Evaluation", 13^th IEEE International Symposium on Biomedical Imaging (ISBI 2016), Prague, Czech Republic, April 13–16, 2016.
A. Lang, A. Carass, B.M. Jedynak, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Intensity Inhomogeneity Correction of Macular OCT Using N3 and Retinal Flatspace", 13^th IEEE International Symposium on Biomedical Imaging (ISBI 2016), Prague, Czech Republic, April 13–16, 2016. (PubMed) (PMCID 5042207)
D. Coon, L. Chen, E.M. Boctor, J.L. Prince, and B. Bojovic, "Proof-of-Concept Studies for Marker-Based Ultrasound Doppler Analysis of Microvascular Anastomoses in a Modified Large Animal Model", Jrnl. of Reconstructive Microsurgery, 32(04):251-255, 2016.
M. Bilgel, Y. An, Y. Zhou, D.F. Wong, J.L. Prince, L. Ferrucci, and S.M. Resnick, "Individual estimates of age at detectable amyloid onset for risk factor assessment", Alzheimer's & Dementia, 12(4):373-379, 2016. (PubMed) (PMCID 4841700)
J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-12, 2016.
M. Stone, J. Woo, J. Lee, T. Poole, A. Seagraves, M. Chung, E. Kim, E.Z Murano, J.L. Prince, and S.S. Blemker, "Structure and variability in human tongue muscle anatomy", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-9, 2016.
L. Liu, J. Glaister, X. Sun, A. Carass, T.D. Tran, and J.L. Prince, "Segmentation of Thalamus from MR images via Task-Driven Dictionary Learning", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF) (PubMed)
S.M. Abulnaga, Z. Yang, A. Carass, K. Kansal, B.M. Jedynak, C.U. Onyike, S.H. Ying, and J.L. Prince, "A toolbox to visually explore cerebellar sub-structure shape changes in cerebellar ataxia", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016.
Z. Yang, S.M. Abulnaga, A. Carass, K. Kansal, B.M. Jedynak, C. Onyike, S.H. Ying, and J.L. Prince, "Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Structural Change Pattern Visualization", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF) (PubMed)
J. Glaister, A. Carass, J.V. Stough, P.A. Calabresi, and J.L. Prince, "Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF) (PubMed)
Y. Huo, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landman, "Combining Multi-atlas Segmentation with Brain Surface Estimation", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016.
L.M. Ellingsen, S. Roy, A. Carass, D.L. Pham, A.M. Blitz, and J.L. Prince, "Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF)
A.J. Plassard, Z. Yang, S. Rane, J.L. Prince, D.O. Claassen, and B.A. Landman, "Improving cerebellar segmentation with statistical fusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016.
K. Li, C. Ye, Z. Yang, A. Carass, S.H. Ying, and J.L. Prince, "Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF) (PubMed)
C. Zhao, A. Carass, A. Jog, and J.L. Prince, "Effects of Spatial Resolution on Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PubMed)
S. Reaungamornrat, T. De Silva, A. Uneri, J.-P. Wolinsky, A.J. Khanna, G. Klienszig, S. Vogt, J.L. Prince, and J.H. Siewerdsen, "MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016.
A. Lang, A. Carass, O. Al-Louzi, P. Bhargava, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Combined registration and motion correction of longitudinal retinal OCT data", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF)
B.J. Antony, M. Chen, A. Carass, B.M. Jedynak, O. Al-Louzi, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Voxel Based Morphometry in Optical Coherence Tomography: Validation & Core Findings", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF)
B.J. Antony, A. Lang, E.K. Swingle, O. Al-Louzi, A. Carass, S.D. Solomon, P.A. Calabresi, S. Saidha, and J.L. Prince, "Simultaneous Segmentation of Retinal Surfaces and Microcystic Macular Edema in SDOCT Volumes", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 – March 3, 2016. (PDF)

2015

B. Ibragimov, J.L. Prince, E.Z. Murano, J. Woo, M. Stone, B. Likar, F. Pernuš, and T. Vrtovec, "Segmentation of tongue muscles from super-resolution magnetic resonance images", Medical Image Analysis, 20(1):198-207, 2015. (PubMed)
J. Woo, J. Lee, E.Z. Murano, F. Xing, M. Al-Talib, M. Stone, and J.L. Prince, "A high-resolution atlas and statistical model of the vocal tract from structural MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 3(1):1-14, 2015. (PubMed)
M. Bilgel, A. Carass, S.M. Resnick, D.F. Wong, and J.L. Prince, "Deformation field correction for spatial normalization of PET images", NeuroImage, 119:152-163, 2015. (PubMed)
S. Roy, Q. He, E. Sweeney, A. Carass, D.S. Reich, J.L. Prince, and D.L. Pham, "Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation", IEEE Journal of Biomedical and Health Informatics, 19(5):1598-1609, 2015. (PubMed)
C. Ye, Z. Yang, S.H. Ying, and J.L. Prince, "Segmentation of the Cerebellar Peduncles Using a Random Forest Classifier and a Multi-object Geometric Deformable Model: Application to Spinocerebellar Ataxia Type 6", Neuroinformatics, 13(3):367-381, 2015. (PubMed)
J. Oh, E.S. Sotirchos, S. Saidha, A. Whetstone, M. Chen, S.D. Newsome, K. Zackowski, L.J. Balcer, E. Frohman, J.L. Prince, M. Diener-West, D.S. Reich, and P.A. Calabresi, "Relationships between quantitative spinal cord MRI and retinal layers in multiple sclerosis", Neurology, 84(7): 720-728, 2015. (PubMed)
S. Roy, A. Carass, J.L. Prince, and D.L. Pham, "Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions", Sixth International Workshop on Machine Learning in Medical Imaging (MLMI 2015), Munich, Germany, October 5, 2015. (PubMed)
M. Bilgel, B. Jedynak, D.F. Wong, S.M. Resnick, and J.L. Prince, "Temporal Trajectory and Progression Score Estimation from Voxelwise Longitudinal Imaging Measures: Application to Amyloid Imaging", 24^th Conference on Information Processing in Medical Imaging (IPMI 2015), Isle of Skye, Scotland, June 28 – July 3, 2015. (PubMed)
J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "Construction of An Unbiased Spatio-Temporal Atlas of the Tongue During Speech", 24^th Conference on Information Processing in Medical Imaging (IPMI 2015), Isle of Skye, Scotland, June 28 – July 3, 2015. (PubMed)
A. Jog, A. Carass, D.L. Pham, and J.L. Prince, "Tree-Encoded Conditional Random Fields for Image Synthesis", 24^th Conference on Information Processing in Medical Imaging (IPMI 2015), Isle of Skye, Scotland, June 28 – July 3, 2015. (PubMed)
B.M. Jedynak, B. Liu, A. Lang, Y. Gel, and J.L. Prince, "A computational method for computing an Alzheimer's Disease Progression Score; experiments and validation with the ADNI dataset", Neurobiology of Aging, 36(S1):S178-S184, 2015. (PubMed)
J. Woo, M. Stone, and J.L. Prince, "Multimodal Registration via Mutual Information Incorporating Geometric and Spatial Context", IEEE Trans. Imag. Proc., 24(2):757-769, 2015. (PubMed)
P. Bhargava, A. Lang, O. Al-Louzi, A. Carass, J.L. Prince, P.A. Calabresi, and S. Saidha, "Applying an open-source segmentation algorithm to different OCT devices in Multiple Sclerosis patients and healthy controls: implications for clinical trials", Multiple Sclerosis International, Article ID 136295, 2015. (PubMed)
G.A. Sigurdsson, Z. Yang, T.D. Tran, J.L. Prince, "Interpretable exemplar-based shape classification using constrained sparse linear models", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21–26, 2015.
F. Xing, C. Ye, J. Woo, M.L. Stone, and J.L. Prince, "Relating speech production to tongue muscle compressions using tagged and high-resolution magnetic resonance imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21–26, 2015. (PubMed)
A. Jog, A. Carass, D.L. Pham, and J.L. Prince, "Multi-output decision trees for lesion segmentation in multiple sclerosis", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21–26, 2015. (PubMed)
M. Chen, A. Jog, A. Carass, and J.L. Prince, "Using image synthesis for multi-channel registration of different image modalities", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21–26, 2015. (PubMed)
E.K. Swingle, A. Lang, A. Carass, O. Al-Louzi, J.L. Prince, and P.A. Calabresi, "Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21–26, 2015. (PubMed)
A. Lang, A. Carass, O. Al-Louzi, P. Bhargava, S. Saidha, H.S. Ying, P.A. Calabresi, and J.L. Prince, "Longitudinal graph-based segmentation of macular OCT using fundus alignment", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21–26, 2015. (PubMed)
A. Lang, A. Carass, E.K. Swingle, O. Al-Louzi, P. Bhargava, S. Saidha, H.S. Ying, P.A. Calabresi, and J.L. Prince, "Automatic segmentation of microcystic macular edema in OCT", Biomed. Opt. Express, 6(1):155-169, 2015. (PubMed)

2014

C. Ye, A. Carass, E. Murano, M. Stone, and J.L. Prince, "A Bayesian Approach to Distinguishing Interdigitated Muscles in the Tongue from Limited Diffusion Weighted Imaging", MICCAI Workshop on Bayesian and Graphical Models for Biomedical Imaging (BAMBI 2014), Boston, MA, September 18, 2014.
J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "Determining Functional Units of Tongue Motion via Graph-regularized Sparse Non-negative Matrix Factorization", 17^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2014), Boston, MA, September 14–18, 2014.
J.V. Stough, J. Glaister, C. Ye, S.H. Ying, J.L. Prince, and A. Carass, "Automatic method for thalamus parcellation using multi-modal feature classification", 17^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2014), Boston, MA, September 14–18, 2014. (PDF)
Z. Yang, S. Zhong, A. Carass, S. Ying, and J.L. Prince, "Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression", Fifth International Workshop on Machine Learning in Medical Imaging (MLMI 2014), Boston, MA, September 14, 2014.
S. Roy, A. Carass, J.L. Prince, and D.L. Pham, "Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation", Fifth International Workshop on Machine Learning in Medical Imaging (MLMI 2014), Boston, MA, September 14, 2014.
M. Bilgel, A. Carass, S.M. Resnick, D.F. Wong, J.L. Prince, "Deformation Field Correction for Spatial Normalization of PET Images Using a Population-Derived Partial Least Squares Model", Fifth International Workshop on Machine Learning in Medical Imaging (MLMI 2014), Boston, MA, September 14, 2014. (PubMed)
J. Lee, J. Woo, F. Xing, E. Murano, M. Stone, and J.L. Prince, "Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI", Computerized Medical Imaging and Graphics, 38(8):714-724, 2014.
J. Woo, M. Stone, Y. Suo, E.Z. Murano, and J.L. Prince, "Tissue-Point Motion Tracking in the Tongue From Cine MRI and Tagged MRI", Journal of Speech, Language, and Hearing Research, 57(2):S626-S636, 2014.
S. Roy, W.-T. Wang, A. Carass, J.L. Prince, J.A. Butman, and D.L. Pham, "PET Attenuation Correction Using Synthetic CT from Ultrashort Echo-Time MR Imaging", Jrnl. of Nuclear Medicine, 55:1-7, 2014.
M. Bilgel, Y. An, A. Lang, J. Prince, L. Ferrucci, B. Jedynak, and S.M. Resnick, "Trajectories of Alzheimer disease-related cognitive measures in a longitudinal sample", Alzheimer’s & Dementia, 10(6):735–742, 2014.
J. Oh, M. Seigo, S. Saidha, E. Sotirchos, K. Zackowski, M. Chen, J.L. Prince, M. Diener-West, P.A. Calabresi, and D.S. Reich, "Spinal Cord Normalization in Multiple Sclerosis", Journal of NeuroImaging, 24(6):577-584, 2014.
N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation", Human Brain Mapping, 35(7):3385-3401, 2014.
M.E. Ranta, M. Chen, D. Crocetti, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky, "Automated MRI parcellation of the frontal lobe", Human Brain Mapping, 35(5):2009-2026, 2014.
P.A. Nyquist, M.S. Bilgel, R. Gottesman, L.R. Yanek, T.F. Moy, L.C. Becker, J. Cuzzocreo, J. Prince, D.M. Yousem, D.M. Becker, B.G. Kral, and D. Vaidya, "Extreme Deep White Matter Hyperintensity Volumes Are Associated with African American Race", Cerebrovascular Diseases, 37(4):244-250, 2014.
N. Kuo, E. Dehghan, A. Deguet, E. C. Burdette, G. Fichtinger, J. L. Prince, D. Y. Song, and J. Lee, "An image-guidance system for dynamic dosimetry in prostate brachytherapy using ultrasound and fluoroscopy", Med. Phys., 41(9):091712, 2014.
M.A.L. Bell, N.P. Kuo, D.Y. Song, J. Kang, and E.M. Boctor, "In vivo photoacoustic imaging of prostate brachytherapy seeds", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014.
M.A.L. Bell, N. Kuo, D.Y. Song, and E.M. Boctor, "Short-lag spatial coherence beamforming of photoacoustic images for enhanced visualization of prostate brachytherapy seeds", Biomed. Opt. Express, 4(10):1964-1977, 2014.
M. Chen, A. Lang, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass, "Analysis of macular OCT images using deformable registration", Biomed. Opt. Express, 5(7):2196-2214, 2014. (PDF)
A. Carass, A. Lang, M. Hauser, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Multiple-object geometric deformable model for segmentation of macular OCT", Biomed. Opt. Express, 5(4):1062-1074, 2014. (PDF)
A. Jog, A. Carass, D.L. Pham, and J.L. Prince, "Random Forest FLAIR reconstruction from T1, T2, and PD-weighted MRI", 11th IEEE International Symposium on Biomedical Imaging (ISBI 2014), Beijing, China, April 28 – May 2, 2014.
A. Jog, A. Carass, and J.L. Prince, "Improving Magnetic Resonance Resolution with Supervised Learning", 11th IEEE International Symposium on Biomedical Imaging (ISBI 2014), Beijing, China, April 28 – May 2, 2014.
S. Roy, Q. He, A. Jog, A. Carass, J.L. Prince, and D.L. Pham, "Example based lesion segmentation", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014.
S. Roy, A. Carass, A. Jog, J.L. Prince, and J. Lee, "MR to CT registration of brains using image synthesis", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014.
G.A. Sigurdsson and J.L. Prince, "Smoothing fields of weighted collections with applications to diffusion MRI processing", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014.
A. Lang, A. Carass, P.A. Calabresi, H.S. Ying, and J.L. Prince, "An adaptive grid for graph-based segmentation in macular cube OCT", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014.
E.K. Swingle, A. Carass, A. Lang, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Microcystic macular edema detection in retina OCT images", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014.

2013

S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Example Based Contrast Synthesis", IEEE Trans. Med. Imag., 32(12):2348-2363, 2013. (PDF)
M. Chen, A. Carass, J. Oh, G. Nair, D.L. Pham, D.S. Reich, and J.L. Prince, "Automatic Magnetic Resonance Spinal Cord Segmentation with Topology Constraints for Variable Fields of View", NeuroImage, 83:1051-1062, 2013. (PDF)
F. Xing, J. Woo, E.Z. Murano, J. Lee, M. Stone, and J.L. Prince, "3D Tongue Motion from Tagged and Cine MR Images", 16^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2013), Nagoya, Japan, September 22–26, 2013. (PDF)
A. Jog, S. Roy, J.L. Prince, and A. Carass, "MR Brain Segmentation using Decision Trees", MICCAI Grand Challenge on MR Brain Image Segmentation (MRBrainS13), Nagoya, Japan, September 26, 2013.
S. Roy, A. Jog, A. Carass, and J.L. Prince, "Atlas Based Intensity Transformation of Brain MR Images", MICCAI Third International Workshop on Multimodal Brain Image Analysis (MBIA 2013).
Z. Yang, J.A. Bogovic, C. Ye, A. Carass, S.H. Ying, and J.L. Prince, "Automated Cerebellar Lobule Segmentation using Graph Cuts", MICCAI Challenge Workshop on Segmentation: Algorithms, Theory and Applications (SATA 2013), Nagoya, Japan, September 26, 2013. (PDF)
A.K. Knutsen, E. Magrath, J. McEntee, J.L. Prince, P. Bayly, J. Butman, and D.L. Pham, "Improved measurement of Brain Deformation during a Mild Acceleration using Tagged MRI", Journal of Neurotrauma, 30(15):A114-A115, August 2013.
J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying, "Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters", NeuroImage, 64(1):616-629, 2013. (PDF) (PubMed)
J.A. Bogovic, J.L. Prince, and P.-L. Bazin, "A Multiple Object Geometric Deformable Model for Image Segmentation", Comput. Vis. Image Und., 117(2):145-157, 2013. (PDF) (PubMed)
J.A. Bogovic, P.L. Bazin, S.H. Ying, and J.L. Prince, "Automated Segmentation of the Cerebellar Lobules using Boundary Specific Classification and Evolution", 23^rd Conference on Information Processing in Medical Imaging (IPMI 2013), Asilomar California, USA, June 29 – July 3, 2013. (PDF)
D. Song, Y. Le, J. Lee, N. Kuo, A. Robinson, A. Deguet, E. Burdette, G. Fichtinger, and J.L. Prince, "Dynamic Dosimetry Using Ultrasound-Fluoroscopy Registration Identifies Cold Spots Intraoperatively During LDR Prostate Brachytherapy", International Journal of Radiation Oncology Biology Physics, 87(2):S379, October 2013.
A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Retinal layer segmentation of macular OCT images using boundary classification", Biomed. Opt. Express, 4(7):1133-1152, 2013. (PDF) (PMCID 3704094)
J. Lee, J. Woo, F. Xing, E.Z. Murano, M. Stone, and J.L. Prince, "Semi-automatic segmentation of the tongue for 3D motion analysis with dynamic MRI", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF)
F. Xing, E.Z. Murano, J. Lee, J. Woo, M. Stone, and J.L. Prince, "MRI Analysis of 3D normal and Post-glossectomy Tongue Motion in Speech", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF)
J. Stough, C. Ye, S.H. Ying, and J.L. Prince, "Thalamic Parcellation from Multi-Modal Data using Random Forest Learning", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (PubMed) (PMCID 3799867)
C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince, "Segmentation of the Complete Superior Cerebellar Peduncles using a Multi-object Geometric Deformable Model", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF)
S. Roy, A. Carass, and J.L. Prince, "Patch Based Intensity Normalization of Brain MR Images", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (PubMed) (PMCID 3892712)
S. Roy, A. Carass, N. Shiee, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince, "Longitudinal Intensity Normalization in the presence of Multiple Sclerosis Lesions", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF)
A. Jog, S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Synthesis through Patch Regression", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (PMCID 3892700)
Z. Yang, A. Carass, and J.L. Prince, "Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (PubMed) (PMCID 3842598)
M. Chen, A. Lang, E. Sotirchos, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass, "Deformable Registration of Macular OCT Using A-mode Scan Similarity", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (PMCID 3892764)
M. Bilgel, S. Roy, A. Carass, P.A. Nyquist, and J.L. Prince, "Automated Anatomical Labeling of the Cerebral Arteries using Belief Propagation", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)
M. Chen, A. Carass, D.S. Reich, P.A. Calabresi, D.L. Pham, and J.L. Prince, "Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)
A. Jog, S. Roy, A. Carass, and J.L. Prince, "Pulse Sequence based Multi-acquisition MR Intensity Normalization", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)
S. Roy, A. Carass, and J.L. Prince, "Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)
C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince, "Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)
Z. Yang, J.A. Bogovic, A. Carass, M. Ye, P.C. Searson, and J.L. Prince, "Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model (MGDM)", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)
N. Kuo, E. Dehgan, A. Deguet, D.Y. Song, J.L. Prince, and J. Lee, "A dynamic dosimetry system for prostate brachytherapy", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)
A. Lang, A. Carass, E. Sotirchos, and J.L. Prince, "Segmentation of Retinal OCT Images using a Random Forest Classifier", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF)

2012

F. Xing, J. Lee, E.Z. Murano, J. Woo, M. Stone, and J.L. Prince, "Estimating 3D Tongue Motion with MR Images", Asilomar Conference on Signals, Systems, and Computers, Pacific Grove, California, November 2012.
P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross, "Brain metabolite alterations and cognitive dysfunction in early Huntington's disease", Movement Disorders, 27(7):895-902, June 2012. (PubMed)
N. Kuo, H.J. Kang, D.Y. Song, J.U. Kang, and E.M. Boctor, "Real-time Photoacoustic Imaging of Prostate Brachytherapy Seeds Using a Clinical Ultrasound System", Journal of Biomedical Optics, 17(6):066005, 2012.
E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, Y. Le, E.C. Burdette, D.Y. Song, J.L. Prince, and G. Fichtinger, "Ultrasound-Fluoroscopy Registration for Prostate Brachytherapy Dosimetry", Medical Image Analysis, 16(7):1347-1358, 2012. (PDF)
J. Lee, J.W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A.J. Khanna, J.L. Prince, and J.H. Siewerdsen, "Volume-of-Change Cone-Beam CT for Image-Guided Surgery", Physics in Medicine and Biology, 57(15):64-77, 2012. (PDF)
N. Kuo, A. Deguet, D.Y. Song, E.C. Burdette, J.L. Prince, and J. Lee, "Automatic segmentation of radiographic fiducial and seeds from X-ray images in prostate brachytherapy", Medical Engineering & Physics, 34(1):64-77, 2012. (PDF) (PubMed) (PMCID 3209498)
Z. Yang, A. Carass, and J.L. Prince, "Automatic Sulcal Curve Extraction with MRF Based Shape Prior", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012. (PDF)
C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying, "Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012. (PDF)
Z. Yang, A. Carass, C. Chen, and J.L. Prince, "Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF)
F. Xing, A.J. Asman, J.L. Prince, and B.A. Landman, "Finding Seeds for Segmentation Using Statistical Fusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF)
J. Woo, Y. Bai, S. Roy, E. Murano, M. Stone, and J.L. Prince, "Super-resolution reconstruction for tongue MR images", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF)
J. Lee, J.W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A.J. Khanna, J.L. Prince, and J.H. Siewerdsen, "Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF)
H.J. Kang, N. Kuo, X. Guo, D. Song, J.U. Kang, and E.M. Boctor, "Software Framework of a Real-time Pre-beamformed RF Data Acquisition of an Ultrasound Research Scanner", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012.
S.Vyas, S. Su, R. Kim, N. Kuo, R.H. Taylor, J.U. Kang, and E.M. Boctor, "Intraoperative Ultrasound to Stereocamera Registration Using Interventional Photoacoustic Imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012.
B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI", NeuroImage, 59(3):2175–2186, 2012. (PDF)
S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Consistent Segmentation using a Rician Classifier", Medical Image Analysis, 16(2):524-535, 2012. (PDF) (PubMed)
B.A. Landman, A.L. Asman, A.G. Scoggins, J.A. Bogovic, F. Xing, and J.L. Prince, "Robust Statistical Fusion of Image Labels", IEEE Trans. Med. Imag., 31(2):512-522, February 2012. (PDF) (PubMed) (PMCID 3262958)
B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "System for Integrated Neuroimaging Analysis and Processing of Structure", Neuroinformatics, 11(1):91-103, 2012. (PDF) (PubMed)
B.A. Landman, A.J. Asman, A.G. Scoggins, J.A. Bogovic, J.A. Stein, and J.L. Prince, "Foibles, follies, and fusion: Web-based collaboration for medical image labelling", NeuroImage, 59(1):530–539, January 2012. (PDF) (PubMed)
X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince, "Topology Preserving Brain Tissue Segmentation Using Graph Cuts", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012), Breckenridge, CO, January 9, 2012. (PDF)

2011

F. Xing, S. Soleimanifard, B.A. Landman, and J.L. Prince, "Statistical Fusion of Continuous Labels: Identification of Cardiac Landmarks", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (PubMed)
B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee, A.W. Toga, J.L. Prince, and S.H. Ying, "MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2", The Cerebellum, 1-8, 2011. (PubMed)
P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham, "Direct segmentation of the major white matter tracts in diffusion tensor images", NeuroImage, 58(2):458-468, September 2011. (PDF) (PubMed)
A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis", NeuroImage, 56(4):1982-1992, June 2011. (PubMed) (PMCID 3105165)
N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham, "Segmentation of brain images using adaptive atlases with application to ventriculomegaly", 22^nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (PubMed) (PMCID 3478153)
S. Roy, A. Carass, and J.L. Prince, "A Compressed Sensing Approach For MR Tissue Contrast Synthesis", 22^nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (PDF) (PubMed) (PMCID 3398746)
H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori, "A framework on surface-based connectivity quantification for the human brain", Journal of Neuroscience Methods, 197(2):324-332, April 2011. (PDF) (PubMed) (PMCID 3081907)
A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince, "Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation", 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), Quebec, Canada, June 26-30, 2011.
N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, and D.L. Pham, "Fiber tractography and tract segmentation in multiple sclerosis lesions", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011.
M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince, "Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011.
S. Roy, A. Carass, and J.L. Prince, "Compressed Sensing Based Intensity Non-Uniformity Correction", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (PDF)
M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince, "Distance Transforms in Multi Channel MR Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF)
S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince, "Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF)
F.E.A. ElShahaby, B.A. Landman, and J.L. Prince, "Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PubMed) (PMCID 3087384)
B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl, "Multi-parametric neuroimaging reproducibility: A 3-T resource study", NeuroImage, 54(4):2854–2866, 2011. (PDF) (PubMed) (PMCID 3020263)
A.J. Asman, A.G. Scoggins, J.L. Prince, and B.A. Landman, "Foibles, Follies, and Fusion: Assessment of Statistical Label Fusion Techniques for Web-Based Collaborations using Minimal Training", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (PubMed) (PMCID 3083117)
J. Lee, N. Kuo, A. Deguet, E. Dehghan, D.Y. Song, E.C. Burdette, and J.L. Prince, "Intraoperative 3-D reconstruction of prostate brachytherapy implants with automatic pose correction", Physics in Medicine and Biology, 56(15):5011-5027, 2011. (PDF) (PubMed)
E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, E.C. Burdette, D. Song, J.L. Prince, and G. Fichtinger, "Point-to-volume registration of prostate implants to ultrasound", 14^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2011), Toronto, Canada, September 18-22, 2011. (PDF) (PubMed) (PMCID 3201745)
J.W. Staymen, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen, "Using prior images with registration in penalized likelihood estimation for CT with sparse data", The 53rd Annual Meeting of American Association of Physicists in Medicine (AAPM), Vancouver, Canada, July 31-August 4, 2011
G.J. Gang*, J. Lee*, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J.H. Siewerdsen, "Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance", Med. Phys., 38(4):1754-1768, 2011, *equal contribution. (PDF) (PubMed) (PMCID 3069989)
J.W. Stayman, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen, "Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF)
O. Sadowsky, J. Lee, E.G. Sutter, S.J. Wall, J.L. Prince, and R.H. Taylor, "Hybrid cone-beam tomographic reconstruction: Incorporation of prior anatomical models to compensate for missing data", IEEE Trans. Med. Imag., 30(1):69-83, January 2011. (PDF) (PubMed)
J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "REDMAPS: Reduced-dimensionality matching for prostate brachytherapy seed reconstruction", IEEE Trans. Med. Imag., 30(1):38-51, January 2011. (PDF) (PubMed) (PMCID 3072797)

2010

X. Liu and J.L. Prince, "Shortest path refinement for motion estimation from tagged MR images", IEEE Trans. Med. Imag., 29(8):1560-1572, August 2010. (PDF) (PubMed)
M. Stone, X. Liu, H. Chen, and J.L. Prince, "A preliminary application of principal components and cluster analysis to internal tongue deformation patterns", Computer Methods in Biomechanics and Biomedical Engineering, 13(4):493-503, August 2010. (PDF) (PubMed) (PMCID 3046779)
E.Z. Murano, H. Shinagawa, J. Zhuo, R.P. Gullapalli, R.A. Ord, J.L. Prince, and M. Stone, "Application of diffusion tensor imaging after glossectomy", Otolaryngology - Head and Neck Surgery, 143(2):304-306, August 2010. (PDF) (PubMed) (PMCID 2924629)
H.K. Agarwal, J.L. Prince, and K.Z. Abd-Elmoniem, "Total removal of unwanted harmonic peaks (TruHARP) MRI for single breath-hold high-resolution myocardial motion and strain quantification", Mag. Reson. Im., 64(2):574-585, August 2010. (PDF) (PubMed)
S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince, "Identification of Myocardial Infarction using Fractional Anisotropy of 3D Strain Tensors", 18^th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1–7, 2010. (PDF)
H.K. Agarwal, S. van Elderen, M. Versluis, A. de Roos, A. Webb, J. Smink, and M. Stuber, "Navigator techniques for coronary MRA at 7 T", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. (PDF)
S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince, "Visualization of infarction using fractional anisotropy", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. $DOI: "Visualization of infarction using fractional anisotropy"$
M.S. Tomas, K.Z. Abd-Elmoniem, T. Sasano, E.J. Vonken, A. Youssef, M. Stuber, H.K. Agarwal, S. Soleimanifard, E. Marbán, J.L Prince, T.P. Abraham, and R. Abraham, "Regional evolution of mechanical dyssynchrony in a closed-chest porcine model of myocardial infarction as assessed by cardiac magnetic resonance", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010.
A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying, "Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration", Journal of Neurology, 257(8):1406-1408, August 2010. (PDF) (PubMed) (PMCID 2963035)
B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham, "JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis", NCI's NCRI, Washington D.C., June 21-22, 2010.
M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince, and S.M. Resnick, "Longitudinal changes in cortical thickness associated with normal aging", NeuroImage, 52(4):1215-1223, October 2010. (PDF) (PubMed) (PMCID 2910226)
K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, "Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities", Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010. (PubMed) (PMCID 2998761)
N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Cortical thinning in Multiple Sclerosis", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich, "Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying, "Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Multi-Channel Enhancement of the Adaptive Bases Algorithm", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince, "A Protocol for Manual Correction of Gyral Based Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince, "A Java Application for Manually Editing Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein, "Graph-Theoretical Methods for Statistical Inference on MR Connectome Data", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman, "Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways", 18^th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1–7, 2010.
S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince, "Longitudinal Changes of White Matter Lesions", 18^th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1–7, 2010.
S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince, "MR Contrast Synthesis for Lesion Segmentation", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (PubMed) (PMCID 2995277)
A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich, "MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability", Multiple Sclerosis, 16(2):166-77, 2010. (PubMed) (PMCID 2820126)
J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi, "Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS", Annual Meeting of the American Academy of Neurology (AAN 2010), Toronto, Canada, April 10-17, 2010.
B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman, "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software", Neuroinformatics, 8:5-17, March 2010. (PubMed) (PMCID 2860951)
J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince, "Statistical Recombination of Rater Labels on Surfaces", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PubMed) (PMCID 2997739)
S. Roy, A. Carass, and J.L. Prince, "Synthesizing MR contrast and resolution through a patch matching technique", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (PubMed) (PMCID 2860803)
X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "A novel contrast for DTI visualization for thalamus delineation", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF)
B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (PubMed) (PMCID 2854412)
N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham, "A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions", NeuroImage, 49(2):1524-1535, January 2010. (PubMed) (PMCID 2806481)
J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Topology-Preserving STAPLE", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2010), San Francisco, California, June 14, 2010. (PDF)
B.A. Landman, J.A. Bogovic, and J.L. Prince, "Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (PubMed) (PMCID 2917119)
L.M. Ellingsen, G. Chintalapani, R.H. Taylor, and J.L. Prince, "Robust deformable image registration using prior shape information for atlas to patient registration", Comput. Med. Imaging Graph, 34(1):79-90, January 2010. (PDF) (PubMed)
J. Bian, J.H Siewerdsen, X. Han, E.Y. Sidky, J.L. Prince, C.A. Pelizzari, and X. Pan, "Evaluation of sparse-view reconstruction from flat-panel-detector cone-beam CT", Physics in Medicine and Biology, 2010. (PDF) (PubMed)
E. Dehghan, J. Lee, M. Moradi, X. Wen, G. Fichtinger, and S.E. Salcudean, "Prostate brachytherapy seed localization using C-arm rotation measurement and motion compensation", 13^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2010), Beijing, China, September 20-24, 2010. (PubMed)
G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen, "Task-based analysis of detectability in tomosynthesis and cone-beam CT: validation of Fourier metrics in comparison to real observers", The 52nd Annual Meeting of the American Association of Physicists in Medicine, Philadelphia, PA, July 18-22, 2010.
G.J. Gang, D.J. Tward, J. Lee, and J.H. Siewerdsen, "Anatomical background and the generalized detectability index for tomosynthesis and cone-beam CT", Med. Phys., 37(5):1948-1965, May 2010. (PubMed) (PMCID 2862054)
N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince, "Seed localization in MRI-guided prostate brachytherapy using inversion-recovery with on-resonant water suppression (IRON)", 18^th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1–7, 2010.
N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince, "MRI-based prostate brachytherapy seed localization", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. Based Brachytherapy.pdf (PDF)
M.S. Ayad, J. Lee, A. Deguet, E.C. Burdette, and J.L. Prince, "C-arm pose estimation using a set of coplanar ellipses in correspondence", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (PDF) (PubMed) (PMCID 2904530)
J. Lee, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "Optimal reconstruction method for intraoperative seed localization using fluoroscopy in prostate brachytherapy", American Brachytherapy Society Annual meeting, Atlanta, Georgia, Apr-May. 2010.
N. Kuo, J. Lee, A. Deguet, D.Y. Song, E.C. Burdette, and J.L. Prince, "Automatic Segmentation of Seeds and Fluoroscope Tracking (FTRAC) Fiducial in Prostate Brachytherapy X-ray Images", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF)
G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen, "The generalized NEQ and detectability index for tomosynthesis and cone-beam CT: from cascaded systems analysis to human observers", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF)