Publications

Publications

2023

• C. Gao, B.A. Landman, J.L. Prince, and A. Carass, "Reproducibility evaluation of the effects of MRI defacing on brain segmentation", Journal of Medical Imaging, 10(6):064001, November 2023. (PDF) (doi)
• S. Wei, Y. Liu, Z. Bian, Y. Wang, L. Zuo, P.A. Calabresi, S. Saidha, J.L. Prince, and A. Carass, "Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation", 10^th Ophthalmic Medical Image Analysis Workshop (OMIA 2023) in conjunction with the 26^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Vancouver, Canada, October 8–12, 2023. (doi) 
• S.W. Remedios, S. Han, L. Zuo, A. Carass, D.L. Pham, J.L. Prince, and B.E. Dewey, "Self-Supervised Super-Resolution for Slice Gap MRI", Simulation and Synthesis in Medical Imaging (SASHIMI 2023) in conjunction with the 26^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Vancouver, Canada, October 8–12, 2023. (doi) 
• Z. Bian, S. Wen, Y. Liu, J. Chen, J. Yu, J. Zhuo, F. Xing, J. Woo, A. Carass, and J.L. Prince, "MomentaMorph: Unsupervised Spatial-Temporal Registration with Momenta, Shooting, and Correction", MICCAI Workshop on Time-Series Data Analytics and Learning (MTSAIL 2023) in conjunction with the 26^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Vancouver, Canada, October 8–12, 2023. 
• L. Zuo, Y. Liu, Y. Xue, B.E. Dewey, S.W. Remedios, S.P. Hays, M. Bilgel, E.M. Mowry, S.D. Newsome, P.A. Calabresi, S.M. Resnick, J.L. Prince, and A. Carass, "HACA3: A unified approach for multi-site MR image harmonization", Computerized Medical Imaging and Graphics, 109:102285, 2023. (doi)    HACA3 Code
• R.J. Okamoto, J.D. Escarcega, A. Alshareef, A. Carass, J.L. Prince, C.L. Johnson, and P.V. Bayly, "Effect Of Direction And Frequency Of Skull Motion On Mechanical Vulnerability Of The Human Brain", J Biomech Eng., 145(11):111005, 2023. (doi)
• S.P. Hays, L. Zuo, Y. Wang, M.G. Luciano, A. Carass, and J.L. Prince, "Exploring the Optimal Operating MR Contrast for Brain Ventricle Parcellation", Medical Imaging with Deep Learning (MIDL 2023), Nashville, TN, July 10–12, 2023. 
• Z. Bian, F. Xing, J. Yu, M. Shao, Y. Liu, A. Carass, J. Zhuo, J. Woo, and J.L. Prince, "DRIMET: Deep Registration-based 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue", Medical Imaging with Deep Learning (MIDL 2023), Nashville, TN, July 10–12, 2023.   
• S. Wei, Y. Liu, L. Zuo, S. Saidha, P.A. Calabresi, J.L. Prince, and A. Carass, "Retinal layer thickness comparison between the UK BioBank and people with multiple sclerosis", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
• Y. Xue, B.E. Dewey, L. Zuo, S.W. Remedios, S.P. Hays, S.D. Cassard, C. Koch, A. Fishman, A. Carass, P.A. Calabresi, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Synthesizing Missing MRI Sequences to Improve Processing Images in Multiple Sclerosis", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
• L. Zuo, S.P. Hays, B.E. Dewey, S.W. Remedios, Y. Xue, S.D. Cassard, C. Koch, A. Fishman, A. Carass, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Inconsistent MR acquisition in longitudinal volumetric analysis: Impacts and solutions", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023. 
• S.P. Hays, L. Zuo, B.E. Dewey, S.W. Remedios, Y. Xue, S.D. Cassard, C. Koch, A. Fishman, A. Carass, P.A. Calabresi, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Quantifying contrast differences among MR images used in clinical studies", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
• B.E. Dewey, A. Fishman, S.D. Cassard, L. Zuo, S.W. Remedios, Y. Xue, C. Koch, A. Carass, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Measuring MRIs Differences Between Sites: Design of a Traveling Subject Study in MS", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
• B.E. Dewey, L. Zuo, S.W. Remedios, Y. Xue, S.D. Cassard, C. Koch, A. Fishman, A. Carass, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Compliance with CMSC MRI Guidelines in a Multi-Center, Pragmatic, Randomized Clinical Trial: Improvements over Time", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
• S.W. Remedios, B.E. Dewey, Y. Xue, L. Zuo, S.D. Cassard, C. Koch, A. Fishman, J.L. Prince, E.M. Mowry, and S.D. Newsome, "Cautions in Anisotropy: Thick Slices and Slice Gaps in 2D MR Acquisition Tarnish Volumetrics", 2023 Consortium of Multiple Sclerosis Centers (CMSC) Annual Meeting, Aurora, CO, May 31 - June 3, 2023.
• S.P. Hays, L. Zuo, Y. Wang, M.G. Luciano, A. Carass, and J.L. Prince, "Optimal operating MR contrast for brain ventricle parcellation", 20^th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18-21, 2023. 
• Y. Wang, A. Feng, Y. Xue, L. Zuo, A.M. Blitz, M.G. Luciano, A. Carass, and J.L. Prince, "Automated ventricle parcellation and Evan’s ratio computation in pre- and post-surgical ventriculomegaly", 20^th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18-21, 2023. 
• P. Duan, Y. Xue, S. Han, L. Zuo, A. Carass, C. Bernhard, P.A. Calabresi, S.M. Resnick, J.S. Duncan, and J.L. Prince, "Rapid brain meninges surface reconstruction with layer topology guarantee", 20^th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18-21, 2023. 
• A. Feng, Y. Xue, Y. Wang, C. Yan, Z. Bian, M. Shao, J. Zhuo, R.P. Gullapalli, A. Carass, and J.L. Prince, "Label propagation via random walk for training robust thalamus nuclei parcellation model from noisy annotations", 20^th IEEE International Symposium on Biomedical Imaging (ISBI 2023), Cartagena de Indias, Colombia, April 18-21, 2023. 
• Y. He, A. Carass, Y. Liu, P.A. Calabresi, S. Saidha, and J.L. Prince, "Longitudinal deep network for consistent OCT layer segmentation", Biomedical Optics Express, 14(5):1874-1893, 2023. (doi) (PubMed)
• M. Shao, F. Xing, A. Carass, X. Liang, J. Zhuo, M. Stone, J. Woo, and J.L. Prince, "Analysis of Tongue Muscle Strain During Speech From Multimodal Magnetic Resonance Imaging", Journal of Speech, Language, and Hearing Research, 66(2):513-526, 2023. (doi) (PubMed)
• S. Han, S.W. Remedios, M. Schär, A. Carass, and J.L. Prince, "ESPRESO: An algorithm to estimate the slice profile of a single magnetic resonance image", Magnetic Resonance Imaging, 98:1-9, 2023. (doi) (PubMed)
• Y. Xue, L. Zuo, S.W. Remedios, B.E. Dewey, P. Duan, Y. Liu, R. Zhang, S. Newsome, E. Mowry, A. Carass, and J.L. Prince, "Unsupervised quality assurance for brain MR Image rigid registration using latent shape representation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi)
• J. Yu, M. Shao, Z. Bian, X. Liang, J. Zhuo, M. Stone, and J.L. Prince, "New starting point registration method for tagged MRI tongue motion estimation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi)
• P. Tohidi, S. Han, L. Zuo, J. Zhuo, S.R. Roys, A. Carass, R.P. Gullapalli, and J.L. Prince, "Joint synthesis of WMn MPRAGE and parameter maps using deep learning and an imaging equation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi)
• Y. Wang, A. Feng, Y. Xue, M. Shao, A. Blitz, M. Luciano, A. Carass, and J.L. Prince, "Investigation of probability maps in deep-learning-based brain ventricle parcellation", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi)
• C. Yan, M. Shao, Z. Bian, A. Feng, Y. Xue, J. Zhuo, R.P. Gullapalli, A. Carass, and J.L. Prince, "Segmenting thalamic nuclei from manifold projections of multi-contrast MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi) 
• S.W. Remedios, B.E. Dewey, A. Carass, D.L. Pham, and J.L. Prince, "A deep generative prior for high-resolution isotropic MR head slices", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi)
• Z. Bian, M. Shao, J. Zhuo, R. Gullapalli, A. Carass, and J.L. Prince, "FastCod: Fast Brain Connectivity in Diffusion Imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi) 
• Z. Bian, M. Shao, A. Carass, and J.L. Prince, "DrDisco: Deep Registration for Distortion Correction of Diffusion MRI with single phase-encoding", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi) 
• X. Liu, F. Xing, J.L. Prince, M. Stone, G. El Fakhri, and J. Woo, "Synthesizing audio from tongue motion during speech using tagged MRI via transformer", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi)
• L. Zuo, Y. Xue, B.E. Dewey, Y. Liu, J.L. Prince, and A. Carass, "A latent space for unsupervised MR image quality control via artifact assessment", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi) 
• A. Hong, A. Carass, J.L. Prince, and A. Alshareef, "Investigating the effect of cerebral atrophy on brain deformation using subject-specific models", Proceedings of SPIE Medical Imaging (SPIE-MI 2023), San Diego, CA, February 19–23, 2023. (doi)

2022

• Y. Liu, A. Carass, L. Zuo, Y. He, S. Han, L. Gregori, S. Murray, R. Mishra, J. Lei, P.A. Calabresi, S. Saidha, and J.L. Prince, "Disentangled Representation Learning for OCTA Vessel Segmentation with Limited Training Data", IEEE Trans. on Medical Imaging, 41(12):3686-3698, 2022. (doi) (PubMed)
• K. Upadhyay, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, D.L. Pham, J.L. Prince, and K.T. Ramesh, "Development and validation of subject-specific 3D human head models based on a nonlinear visco-hyperelastic constitutive framework", J. R. Soc. Interface, 19:20220561, 2022. (doi)
• K. Upadhyay, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, D.L. Pham, J.L. Prince, and K.T. Ramesh, "Development of Subject-Specific 3D Human Head Models Based on a Nonlinear Visco-Hyperelastic Constitutive Framework", Society of Engineering Science Annual Technical Meeting (SES 2022), College Station, TX, October 16 – 19, 2022.
• Y. Xue, B.E. Dewey, L. Zuo, S. Han, A. Carass, P. Duan, S. Remedios, D.L. Pham, S. Saidha, P.A. Calabresi, and J.L. Prince, "Bi-directional Synthesis of Pre- and Post-contrast MRI via Guided Feature Disentanglement", Simulation and Synthesis in Medical Imaging (SASHIMI 2022) in conjunction with the 25^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), Singapore, September 18–22, 2022. (doi) 
• Y. Liu, L. Zuo, S. Han, J. L. Prince, and A. Carass, "Coordinate Translator for Learning Deformable Medical Image Registration", 3^rd Multiscale Multimodal Medical Imaging (MMMI 2022) in conjunction with the 25^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), Singapore, September 18–22, 2022.  
• L. Zuo, Y. Liu, Y. Xue, S. Han, M. Bilgel, S.M. Resnick, J.L. Prince, and A. Carass, "Disentangling from A Single MR Modality", 2^nd Workshop on Data Augmentation, Labeling, and Imperfections (DALI 2022) in conjunction with the 25^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), Singapore, September 18–22, 2022. (doi)  
• G. Morilhat, N. Kifle, S. FinesilverSmith, B. Ruijsink, H. Tegegne Desita, Z. Tegegne Desita, E. Puyol-Antón, A. Carass, and A.P. King, "Deep Learning-based Segmentation of Pleural Effusion From Ultrasound Using Coordinate Convolutions", 2^nd workshop on aFfordable AI and healthcare for Resource diverse global health (FAIR 2022) in conjunction with the 25^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), Singapore, September 18–22, 2022.  
• S.W. Remedios, S. Han, Y. Xue, T. Tran, A. Carass, D.L. Pham, and J.L. Prince, "Deep filter bank regression for super-resolution of anisotropic MR brain images", 25^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), Singapore, September 18–22, 2022. (doi)  
• X. Liu, F. Xing, J.L. Prince, J. Zhuo, M. Stone, G.E. Fakhri, and J. Woo, "Tagged-MRI2Audio with Attention Guided Heterogeneous Translator", 25^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), Singapore, September 18–22, 2022. (doi) 
• E.S. Sotirchos, E.S. Vasileiou, A.G. Filippatou, K.C. Fitzgerald, M.D. Smith, H.-N. Lord, G. Kalaitzidis, J. Lambe, A. Duval, J.L. Prince, E.M. Mowry, S. Saidha, and P.A. Calabresi, "Association of Serum Neurofilament Light Chain With Inner Retinal Layer Thinning in Multiple Sclerosis", Neurology, 99(7):e688-e697, 2022. (doi)
• N.E. Fritz, E.M. Edwards, C. Ye, J. Prince, Z. Yang, T. Gressett, J. Keller, E. Myers, P.A. Calabresi, and K.M. Zackowski, "Cerebellar contributions to motor and cognitive control in Multiple Sclerosis", Archives of Physical Medicine and Rehabilitation, 103(8):1592-1599, 2022. (doi)
• K. Upadhyay, D.G. Giovanis, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, M.D. Shields, and K.T. Ramesh, "Data-driven Uncertainty Quantification in Computational Human Head Models", Computer Methods in Applied Mechanics and Engineering, 398:115108, 2022. (doi)
• K. Upadhyay, R. Jagani, D.G. Giovanis, A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, P.V. Bayly, M.D. Shields, and K.T. Ramesh, "Effect of Human Head Shape on the Risk of Traumatic Brain Injury: A Gaussian Process Regression-Based Machine Learning Approach", World Congress of Biomechanics, Taipei, Taiwan, July 10 – 13, 2022.
• A. Alshareef, P.V. Bayly, A.K. Knutsen, K. Upadhyay, R.J. Okamoto, A. Carass, J.A. Butman, D.L. Pham, J.L. Prince, K.T. Ramesh, and C.L. Johnson, "A Publicly Available Dataset of Human Brain Biomechanics Using MR Imaging for Computational Model Validation", 39^th Annual National Neurotrauma Symposium (NNS 2022), Atlanta, GA, June 26 – 29, 2022.
• X. Liu, F. Xing, M. Stone, J.L. Prince, J. Kim, G. El Fakhri, J. Woo, "Cmri2spec: Cine MRI Sequence to Spectrogram Synthesis via A Pairwise Heterogeneous Translator", IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2022), Singapore, May 22–27, 2022.
• X. Liu, F. Xing, M. Stone, J.L. Prince, J. Kim, G. El Fakhri, and J. Woo, "Tagged-MRI to audio synthesis with a pairwise heterogeneous deep translator", The Journal of the Acoustical Society of America, 151:A133, 2022. (doi)
• A.G. Filippatou, E.S. Vasileiou, Y. He, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, M.A. Mealy, M. Levy, Y. Liu, J.L. Prince, E.M. Mowry, S. Saidha, P.A. Calabresi, E.S. Sotirchos, C. Fraser, and S. Mollan, "Optic Neuritis–Independent Retinal Atrophy in Neuromyelitis Optica Spectrum Disorder", Journal of Neuro-Ophthalmology, 42(1):e40-e47, 2022. (doi)
• P. Tohidi, S.W. Remedios, D.L. Greenman, M. Shao, S. Han, B.E. Dewey, J.C. Reinhold, Y.-Y. Chou, D.L. Pham, J.L. Prince, and A. Carass, "Multiple Sclerosis Brain Lesion Segmentation with Different Architecture Ensembles", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• C. Gao, L. Jin, J.L. Prince, and A. Carass, "Effects of Defacing Whole Head MRI on Neuroanalysis", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• A. Alshareef, A. Carass, A.K. Knutsen, M.E. Peters, K.T. Ramesh, and J.L. Prince, "Investigating the Effect of Ventricle Size on Brain Deformation using Computational Models", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• A. Alshareef, C.L. Johnson, A. Carass, A.K. Knutsen, K.T. Ramesh, P.V. Bayly, D.L. Pham, and J.L. Prince, "Relationship between cerebral vasculature and brain stiffness measured using MR elastography", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• P. Duan, S. Han, L. Zuo, Y. An, Y. Liu, A. Alshareef, J. Lee, A. Carass, S.M. Resnick, and J.L. Prince, "Cranial Meninges Reconstruction Based on Convolutional Networks and Deformable Models: Applications to Longitudinal Study of Normal Aging", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• M. Shao, L. Zuo, A. Carass, J. Zhuo, R. P. Gullapalli, and J.L. Prince, "Evaluating the impact of MR image harmonization on thalamus deep network segmentation", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi) (PubMed)
• S.P. Hays, L. Zuo, A. Carass, and J.L. Prince, "Evaluating the impact of MR image contrast on whole brain segmentation", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• F. Xing, X. Liu, T.G. Reese, M. Stone, V.J. Wedeen, J.L. Prince, G. El Fakhri, and J. Woo, "Measuring strain in diffusion-weighted data using tagged magnetic resonance imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• X. Liu, F. Xing, J.L. Prince, M. Stone, G. El Fakhri, and J. Woo, "Structure-aware unsupervised tagged-to-cine MRI synthesis with self disentanglement", Proceedings of SPIE Medical Imaging (SPIE-MI 2022), San Diego, CA, February 20–24, 2022. (doi)
• R. Kerestes, S. Han, S. Balachander, C. Hernandez-Castillo, J.L. Prince, J. Diedrichsen, and I.H. Harding, "A Standardized Pipeline for Examining Human Cerebellar Grey Matter Morphometry using Structural Magnetic Resonance Imaging", JoVE, 180:e63340, 2022. (doi)

2021

• A. Alshareef, A.K. Knutsen, C.L. Johnson, A. Carass, K. Upadhyay, P.V. Bayly, D.L. Pham, J.L. Prince and K.T.Ramesh, "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Brain Models", Brain Multiphysics, 100028, 2021. (doi)
• A. Alshareef, A.K. Knutsen, C. Johnson, A. Carass, K. Upadhyay, K.T. Ramesh, and J.L. Prince, "Integrating Linear Viscoelastic Material Properties Derived from Magnetic Resonance Elastography into Subject-Specific Finite Element Brain Models", Biomedical Engineering Society (BMES) Annual Meeting, Orlando, FL, October 6-9, 2021. 
• J.C. Reinhold, A. Carass, and J.L. Prince, "A Structural Causal Model for MR Images of Multiple Sclerosis", 24^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021), Strasbourg, France, September 27 – October 1, 2021. (doi)  
• S.W. Remedios, S. Han, B.E. Dewey, D.L. Pham, J.L. Prince, and A. Carass, "Joint Image and Label Self-Super-Resolution", Simulation and Synthesis in Medical Imaging (SASHIMI 2021) in conjunction with the 24^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021), Strasbourg, France, September 27 – October 1, 2021. (doi) (PubMed) 
• L. Zuo, B.E. Dewey, Y. Liu, Y. He, S.D. Newsome, E.M. Mowry, S.M. Resnick, J.L. Prince, and A. Carass, "Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory", NeuroImage, 243:118569, 2021. (doi) (PubMed)
• P.V. Bayly, A. Alshareef, A.K. Knutsen, K. Upadhyay, R.J. Okamoto, A. Carass, J.A. Butman, D.L. Pham, J.L. Prince, K.T. Ramesh, and C.L. Johnson, "MR imaging of human brain mechanics in vivo: new measurements to facilitate the development of computational models of brain injury", Annals of Biomedical Engineering, 49:2677-2692, 2021. (doi)
• Y. He, A. Carass, L. Zuo, B.E. Dewey, and J.L. Prince, "Autoencoder Based Self-Supervised Test-Time Adaptation for Medical Image Analysis", Medical Image Analysis, 72:102136, 2021. (doi) (PubMed)
• S. Han, S. Remedios, A. Carass, M. Schär, and J.L. Prince, "MR Slice Profile Estimation by Learning to Match Internal Patch Distributions", 27^th Conference on Information Processing in Medical Imaging (IPMI 2021), Virtually in Bornholm, Denmark, June 28 - July 2, 2021. (doi)  
• L. Zuo, B.E. Dewey, A. Carass, Y. Liu, Y. He, P.A. Calabresi, and J.L. Prince, "Information-based Disentangled Representation Learning for Unsupervised MR Harmonization", 27^th Conference on Information Processing in Medical Imaging (IPMI 2021), Virtually in Bornholm, Denmark, June 28 - July 2, 2021. (doi)  
• S. Han, A. Carass, M. Schär, P.A. Calabresi, and J.L. Prince, "Slice profile estimation from 2D MRI acquisition using generative adversarial networks", 18^th IEEE International Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021. (doi) 
• X. Liu, F. Xing, J.L. Prince, A. Carass, M. Stone, G. El Fakhri, and J. Woo, "Dual-Cycle constrained bijective VAE-GAN for Tagged-to-Cine magnetic resonance image synthesis", 18^th IEEE International Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021. (doi)  (PubMed)
• C Zhao, B.E. Dewey, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince, "SMORE: A Self-supervised Anti-aliasing and Super-resolution Algorithm for MRI Using Deep Learning", IEEE Trans. on Medical Imaging, 40(3):805-817, 2021. (doi)
• S. Wang, S. Han, A. Carass, and J.L. Prince, "Thalamus Segmentation Using Convolutional Neural Network", Proceedings of SPIE Medical Imaging (SPIE-MI 2021), San Diego, CA, February 14–18, 2021. (doi) 
• M. Singh, E. Pahl, S. Wang, A. Carass, J. Lee, and J.L. Prince, "Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network", Proceedings of SPIE Medical Imaging (SPIE-MI 2021), San Diego, CA, February 14–18, 2021. (doi) (PubMed) 
• D. Liu, J. Liu, R. Tao, J.L. Prince, and A. Carass, "Label super resolution for 3D Magnetic Resonance Images using Deformable U-net", Proceedings of SPIE Medical Imaging (SPIE-MI 2021), San Diego, CA, February 14–18, 2021. (doi) 
• M. Shao, A.D. Gomez, J. Zhuo, X. Liang, M. Stone, A. Carass, and J.L. Prince, "Reconstruction and refinement of crossing muscle fibers in the human tongue", Proceedings of SPIE Medical Imaging (SPIE-MI 2021), San Diego, CA, February 14–18, 2021. (doi) 
• M. Shao, A. Carass, J. Zhuo, X. Liang, D.H. Ghunaim, M. Stone, and J.L. Prince, "Dynamic palatogram generation from Cine MRI for normalized speech assessment", Proceedings of SPIE Medical Imaging (SPIE-MI 2021), San Diego, CA, February 14–18, 2021. (doi) 
• Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A.Calabresi, and J.L. Prince, "Structured layer surface segmentation for retina OCT using fully convolutional regression networks", Medical Image Analysis, 68:101856, 2021. (doi)

2020

• A.G. Filippatou, E.S. Vasileiou, Y. He, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, M.A. Mealy, M. Levy, Y. Liu, J.L. Prince, E.M. Mowry, S. Saidha, P.A. Calabresi, and E.S. Sotirchos, "Evidence of subclinical quantitative retinal layer abnormalities in AQP4-IgG seropositive NMOSD", Multiple Sclerosis Journal, 1352458520977771, 2020. (doi)
• A.G. Filippatou, M. Moniruzzaman, E.S. Sotirchos, K.C. Fitzgerald, G. Kalaitzidis, J. Lambe, E. Vasileiou, S. Saidha, J.L. Prince, N. Haughey, P.A. Calabresi, and P. Bhargava, "Serum ceramide levels are altered in multiple sclerosis", Multiple Sclerosis Journal, number = 1352458520971816, 2020. (doi)
• H. Yang, J. Sun, A. Carass, C. Zhao, J. Lee, J.L. Prince, and Z. Xu, "Unsupervised MR-to-CT Synthesis using Structure-Constrained CycleGAN", IEEE Trans. on Medical Imaging, 39(12):4249-4261, 2020. (doi) (PubMed)
• E.S. Sotirchos, A. Filippatou, K.C. Fitzgerald, S. Salama, S. Pardo, J. Wang, E. Ogbuokiri, N.J. Cowley, N. Pellegrini, O.C. Murphy, M.A. Mealy, J.L. Prince, M. Levy, P.A. Calabresi, S. Saidha, "Aquaporin-4 IgG seropositivity is associated with worse visual outcomes after optic neuritis than MOG-IgG seropositivity and multiple sclerosis, independent of macular ganglion cell layer thinning", Multiple Sclerosis Journal, 26(11):1360-1371, 2021. (doi)
• A.K. Knutsen, A.D. Gomez, M. Gangolli, W.T. Wang, D. Chan, Y.C. Lu, E. Christoforou, J.L. Prince, P.V. Bayly, J.A. Butman, D.L. Pham, "In vivo estimates of axonal stretch and 3D brain deformation during mild head impact", Brain Multiphysics, 100015, 2020. (doi)
• J Oh, M Chen, K Cybulsky, S Suthiphosuwan, E Seyman, B Dewey, M. Diener-West, P. van Zijl, J. Prince, D.S. Reich, and P.A. Calabresi, "Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis", Multiple Sclerosis Journal, 1352458520923970, 2020. (doi)
• E.S. Sotirchos, N. Gonzalez Caldito, A. Filippatou, K.C. Fitzgerald, O.C. Murphy, J. Lambe, J. Nguyen, J. Button, E. Ogbuokiri, C.M. Crainiceanu, J.L. Prince, P.A. Calabresi, S. Saidha, and International Multiple Sclerosis Visual System (IMSVISUAL) Consortium, "Progressive multiple sclerosis is associated with faster and specific retinal layer atrophy", Annals of Neurology, 87(6):885-896, 2020. (doi)
• O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotircho, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, S. Saidha, "Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures", Multiple Sclerosis Journal, 26(7):815-828, 2020. (doi)
• M. Shao, A. Carass, A.D. Gomez, J. Zhuo, X. Liang, M. Stone, and J.L. Prince, "Direct reconstruction of crossing muscle fibers in the human tongue using a deep neural network", International Workshop on Computational Diffusion MRI (CDMRI 2020), Lima Peru, October 8, 2020.
• S. Han, J.L. Prince, and A. Carass, "Inhomogeneity Correction in Magnetic Resonance Images Using Deep Image Priors", 11^th International Workshop on Machine Learning in Medical Imaging (MLMI 2020), Lima Peru, October 4, 2020. (doi) 
• L. Zuo, B.E. Dewey, A. Carass, Y. He, M. Shao, J.C. Reinhold, and J.L. Prince, "Synthesize Realistic MR Images with Noise Control", Simulation and Synthesis in Medical Imaging (SASHIMI 2020) in conjunction with the 23^rd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2020), Lima, Peru, October 4 - 8, 2020. (doi) 
• B.E. Dewey, L. Zuo, A. Carass, Y. He, J.C. Reinhold, Y. Liu, E. Mowry, S. Newsome, J. Oh, P.A. Calabresi, and J.L. Prince, "A Disentangled Latent Space for Cross-Site MRI Harmonization", 23^rd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2020), Lima, Peru, October 4 - 8, 2020. (doi) 
• Y. He, A. Carass, L. Zuo, B.E. Dewey, and J.L. Prince, "Self domain adapted network", 23^rd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2020), Lima, Peru, October 4 - 8, 2020. (doi)  
• J. Lambe, A. Rothman, J. Prince, S. Saidha, P.A. Calabresi, S.D. Newsome, "Retinal pathology occurs in stiff-person syndrome", Neurology, 94(20):e2126-e2131, 2020. (doi)
• S. Han, Y. An, A. Carass, J.L. Prince, and S.M. Resnick, "Longitudinal analysis of regional cerebellum volumes during normal aging", NeuroImage, 220:117062, 2020. (doi) (PubMed)
• A. Carass, S. Roy, A. Gherman, J.C. Reinhold, A. Jesson, T. Arbel, O. Maier, H. Handels, M. Ghafoorian, B. Platel, A. Birenbaum, H. Greenspan, D.L. Pham, C.M. Crainiceanu, P.A. Calabresi, J.L. Prince, W.R. Gray Roncal, R.T. Shinohara, and I. Oguz, "Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis", Nature Scientific Reports, 10:8242, 2020. (doi) (PubMed)
• S. Han, A. Carass, Y. He, and J.L. Prince, "Automatic Cerebellum Anatomical Parcellation using U-Net with Locally Constrained Optimization", NeuroImage, 218:116819, 2020. (doi) (PubMed)
• J.C. Reinhold, Y. He, S. Han, Y. Chen, D. Gao, J. Lee, J.L. Prince, and A. Carass, "Validating uncertainty in medical image translation", 17^th IEEE International Symposium on Biomedical Imaging (ISBI 2020), Iowa City, IA, April 3 - 7, 2020. (doi)  
• Y. He, A. Carass, Y. Liu, S. Saidha, P.A. Calabresi, and J.L. Prince, "Adversarial domain adaptation for multi-device retinal OCT segmentation", Proceedings of SPIE Medical Imaging (SPIE-MI 2020), Houston, TX, February 15 - 20, 2020. (doi)
• J.C. Reinhold, Y. He, S. Han, Y. Chen, D. Gao, J. Lee, J.L. Prince, and A. Carass, "Finding novelty with uncertainty", Proceedings of SPIE Medical Imaging (SPIE-MI 2020), Houston, TX, February 15 - 20, 2020. (doi) 
• Y. Liu, L. Zuo, A. Carass, Y. He, A. Filippatou, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Variational intensity cross channel encoder for unsupervised vessel segmentation on OCT angiography", Proceedings of SPIE Medical Imaging (SPIE-MI 2020), Houston, TX, February 15 - 20, 2020. (doi)
• J. Woo, F. Xing, J.L. Prince, M. Stone, T. Reese, V. Wedeen, G. El Fakhri, "Identifying the common and subject-specific functional units of speech movements via a joint sparse non-negative matrix factorization framework", Proceedings of SPIE Medical Imaging (SPIE-MI 2020), Houston, TX, February 15 - 20, 2020. (doi) (PubMed) (PMCID 7243345)
• S. Han, J.L. Prince, and A. Carass, "Reflection-equivariant convolutional neural networks improve segmentation over reflection augmentation", Proceedings of SPIE Medical Imaging (SPIE-MI 2020), Houston, TX, February 15 - 20, 2020. (doi)
• Y. He, A. Carass, Y. Liu, A. Filippatou, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Segmenting retinal OCT images with inter-B-scan and longitudinal information", Proceedings of SPIE Medical Imaging (SPIE-MI 2020), Houston, TX, February 15 - 20, 2020. (doi)

2019

• B.E. Dewey, C. Zhao, J.C. Reinhold, A. Carass, K.C. Fitzgerald, E.S. Sotirchos, S. Saidha, J. Oh, D.L. Pham, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince, "DeepHarmony: A deep learning approach to contrast harmonization across scanner changes", Magnetic Resonance in Medicine, 64:160-170, 2019. (doi) (PubMed)
• C. Zhao, M. Shao, A. Carass, H. Li, B.E. Dewey, L.M. Ellingsen, J. Woo, M.A. Guttman, A.M. Blitz, M. Stone, P.A. Calabresi, H. Halperin, and J.L. Prince, "Applications of a deep learning method for anti-aliasing and super-resolution in MRI", Magnetic Resonance in Medicine, 64:132-141, 2019. (doi) (PubMed)
• S. Han, A. Carass, and J.L. Prince, "Hierarchical Parcellation of the Cerebellum", 22^nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019. (doi) (PubMed)
• Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Fully Convolutional Boundary Regression for Retina OCT Segmentation", 22^nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019. (doi) (PubMed)
• C. Zhao, S. Son, Y. Kim, and J.L. Prince, "iSMORE: An Iterative Self Super-Resolution Algorithm", 130-139, Simulation and Synthesis in Medical Imaging (SASHIMI 2019) held in conjunction with the 22^nd International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), Shenzhen, China, October 13 - 17, 2019. (doi)
• Y. He, A. Carass, Y. Liu, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT", Biomedical Optics Express, 10(10):5042-5058, 2019. (doi) (PubMed)
• F. Xing, M. Stone, T. Goldsmith, J.L. Prince, G. El Fakhri, and J. Woo, "Atlas-Based Tongue Muscle Correlation Analysis From Tagged and High-Resolution Magnetic Resonance Imaging", J. Speech Lang. Hear. Res., 62(7):2258-2269, 2019. (doi) (PubMed)
• M. Shao, S. Han, A. Carass, X. Li A.M. Blitz, J. Shin, J.L.Prince, and L.M. Ellingsen, "Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly", NeuroImage: Clinical, 23:101871, 2019. (doi) (PubMed)
• J. Woo, F. Xing, J.L. Prince, M. Stone, J.R. Green, T. Goldsmith, T.G. Reese, V.J. Wedeen, and G. El Fakhri, "Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning", J. Acoust. Soc. Am., 145(5):EL423, 2019. (doi) (PubMed)
• Y. Liu, A. Carass, A. Filippatou, Y. He, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Projection Artifact Suppression for Inner Retina in OCT Angiography", 16^th IEEE International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, April 8 - 11, 2019. (PDF) (doi)
• O.C. Murphy, O. Kwakyi, M. Iftikhar, S. Zafar, J. Lambe, N. Pellegrini, E.S. Sotirchos, N. Gonzalez-Caldito, E. Ogbuokiri, A. Filippatou, H. Risher, N. Cowley, S. Feldman, N. Fioravante, E.M. Frohman, T.C. Frohman, L.J. Balcer, J.L. Prince, R. Channa, P.A. Calabresi, and S. Saidha, "Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures", Mult. Scler., 1352458519845116, 2019. (doi) (PubMed)
• N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al-Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Ann Clin Transl Neurol, 2019. (doi) (PubMed)
• J. Woo, J.L. Prince, M. Stone, F. Xing, A.D. Gomez, J.R. Green, C.J. Hartnick, T.J. Brady, T.G. Reese, V.J. Wedeen, and G. El Fakhri, "A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI", IEEE Trans. on Medical Imaging, 38(3):730-740, 2019. (doi)
• H.E. Atlason, M. Shao, V. Robertsson, S. Sigurdsson, V. Gudnason, J.L. Prince, and L.M. Ellingsen, "Large-scale parcellation of the ventricular system using convolutional neural networks", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi)
• J.C. Reinhold, B.E. Dewey, A. Carass, and J.L. Prince, "Evaluating the impact of intensity normalization on MR Image Synthesis", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi) (PubMed)
• L. Zuo, S. Han, A. Carass, S.H. Ying, C.U. Onyike, and J.L. Prince, "Automatic Quality Control Using Hierarchical Shape Analysis", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi)
• S. Han, Y. He, A. Carass, S.H. Ying, and J.L. Prince, "Cerebellum parcellation with convolutional neural networks", Proceedings of SPIE Medical Imaging (SPIE-MI 2019), San Diego, CA, February 16 - 21, 2019. (doi) (PubMed)
• D. Li, J. Wu, Y. He, X. Yao, W. Yuan, D. Chen, H.-C. Park, S. Yu, J.L. Prince, X. Li, "Parallel deep neural networks for endoscopic OCT image segmentation", Biomedical Optics Express, 10(3):1126-1135, 2019. (doi) (PubMed)
• Y. Liu, A. Carass, Y. He, B.J. Antony, A. Filippatou, S. Saidha, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Layer boundary evolution method for macular OCT layer segmentation", Biomedical Optics Express, 10(3):1064-1080, 2019. (doi) (PubMed) (PMCID 6420297)
• A.M. Ghanem, A.H. Hamimi, J.R. Matta, A. Carass, R.M. Elgarf, A.M. Gharib, and K.Z. Abd-Elmoniem, "Dual Level-Set Framework for 3D Coronary Artery Wall Segmentation from Coronary CT Angiography", Nature Scientific Reports, 9:47, 2019. (doi) (PubMed)
• Y. He, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Retinal layer parcellation of optical coherence tomography images: Data resource for Multiple Sclerosis and Healthy Controls", Data in Brief, 22:601-604, 2019. (doi) (PubMed) (PMCID 6327073)
• Y.-C. Lu, N.P. Daphalapurkar, A.K. Knutsen, J. Glaister, D.L. Pham, J.A. Butman, J.L. Prince, P.V. Bayly, and K.T. Ramesh, "A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium", Ann. Biomed. Eng., 2019. (doi)
• E.S. Sotirchos, N. Gonzalez-Caldito, B.E. Dewey, K.C. Fitzgerald, J. Glaister, A. Filippatou, E. Ogbuokiri, S. Feldman, O. Kwakyi, H. Risher, C. Crainiceanu, D.L. Pham, P.C. Van Zijl, E.M. Mowry, D.S. Reich, J.L. Prince, P.A. Calabresi, and S. Saidha, "Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis", Multiple Sclerosis Journal, 2019. (doi)
• N.E. Fritz, A. Eloyan, J. Glaister, B.E. Dewey, O. Al‐Louzi, M.G. Costello, M. Chen, J.L. Prince, P.A. Calabresi, and K.M. Zackowski, "Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS", Annals of Clinical and Translational Neurology, 6(3):586-595, 2019. (doi)

2018

• M. Chen, J.C. Gee, J.L. Prince, and G.K. Aguirre, "2D Modeling and Correction of Fan-beam Scan Geometry in OCT", Comput Pathol Ophthalmic Med Image Anal (2018), 11039:328-335, 2018. (doi) (PubMed)
• L. Maier-Hein, M. Eisenmann, A Reinke, S. Onogur, M. Stankovic, P. Scholz, T. Arbel, H. Bogunovic, A. P. Bradley, A. Carass, C. Feldmann, A. Frangi, P. M. Full, B. van Ginneken, A. Hanbury, K. Honauer, M. Kozubek, B. A. Landman, K. März, O. Maier, K. Maier-Hein, B. Menze, H. Müller, P. F. Neher, W. Niessen, N. Rajpoot, G. Sharp, K. Sirinukunwattana, S. Speidel, C. Stock, D. Stoyanov, A. A. Taha, F. van der Sommen, C.-W. Wang, M.-A. Weber, G. Zheng, P. Jannin, and A. Kopp-Schneider, "Why rankings of biomedical image analysis competitions should be interpreted with care", Nature Communications, 9(1):5217, 2018. (doi) (PubMed) (PMCID 6284017)
• M. Chen, J.C. Gee, J.L. Prince, and G.K. Aguirre, "2D Modeling and Correction of Fan-beam Scan Geometry in OCT", 5^th Workshop on Ophthalmic Medical Image Analysis (MW-OMIA5) held in conjunction with the 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018. (doi)
• A.D. Gomez, A.K. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "Quantitative validation of MRI-based motion estimation for brain impact biomechanics", Computational Biomechanics for Medicine (CBM XIII) held in conjunction with the 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018.
• Y. Hiasa, Y. Otake, M. Takao, T. Matsuoka, K. Takashima, A. Carass, J. Prince, N. Sugano, and Y. Sato, "Crossmodality image synthesis from unpaired data using CycleGAN: Effects of gradient consistency loss and training data size", Simulation and Synthesis in Medical Imaging (SASHIMI 2018) held in conjunction with the 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018. (doi)
• B.E. Dewey, C. Zhao, A. Carass, J. Oh, P.A. Calabresi, P. van Zijl, and J.L. Prince, "Deep Harmonization of Inconsistent MR Data for Consistent Volume Segmentation", Simulation and Synthesis in Medical Imaging (SASHIMI 2018) held in conjunction with the 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018. (doi)
• M. Shao, S. Han, A. Carass, X. Li, B.E. Dewey, A.M. Blitz, J.L. Prince, and L.M. Ellingsen, "Shortcomings of Ventricle Segmentation Using Deep Convolutional Networks", Deep Learning Fails Workshop in conjunction with the 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018. (doi) (PubMed)
• H. Yang, J. Sun, A. Carass, C. Zhao, J. Lee, Z. Xu, and J. L. Prince, "Unpaired Brain MR-to-CT Synthesis using a Structure-Constrained CycleGAN", 4^th Workshop on Deep Learning in Medical Image Analysis (DLMIA 2018) in conjunction with the 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018. (doi)
• A.D. Gomez, M. Stone, P. Bayly, and J.L. Prince, "Quantifying Tensor Field Similarity With Global Distributions and Optimal Transport", 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018. (doi)
• C. Zhao, A. Carass, B.E. Dewey, J. Woo, J. Oh, P.A. Calabresi, D.S. Reich, P. Sati, D.L. Pham, and J.L. Prince, "A Deep Learning based Anti-aliasing Self Super-resolution Algorithm for Magnetic Resonance Imaging", 21^st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Granada, Spain, September 16 - 20, 2018. (doi)
• A. Carass, J.L. Cuzzocreo, S. Han, C.R. Hernandez-Castillo, P.E. Rasser, M. Ganz, V. Beliveau, J. Dolz, I. Ben Ayed, C. Desrosiers, B. Thyreau, J. E. Romero, P. Coupé, J.V. Manjón, V.S. Fonov, D.L. Collins, S.H. Ying, D. Crocetti, B.A. Landman, S.H. Mostofsky, P.A. Thompson, and J.L. Prince, "Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance imaging", NeuroImage, 183:150-172, 2018. (doi) (PubMed)
• J. Wongsripuemtet, A.E. Tyan, A. Ranjha, A. Carass, S. Agarwal, S.K. Gujar, J.J. Pillai, and H.I. Sair, "Preoperative mapping of the supplementary motor area in brain tumor patients using resting-state fMRI with seed based analysis", American Journal of Neuroradiology, 39(8):1493-1498, 2018. (doi) (PubMed)
• C. Zhao, A. Carass, B.E. Dewey, and J.L. Prince, "Self Super-Resolution for Magnetic Resonance Images using Deep Networks", 15^th IEEE International Symposium on Biomedical Imaging (ISBI 2018), Washington, D.C., April 4 - 7, 2018. (doi) 
• Y. Liu, A. Carass, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Multi-Layer Fast Level Set Segmentation for Macular OCT", 15^th IEEE International Symposium on Biomedical Imaging (ISBI 2018), Washington, D.C., April 4 - 7, 2018. (doi) (PubMed)
• F. Xing, J.L. Prince, M. Stone, T. Reese, N. Atassi, V. Wedeen, G. El Fakhri, and J. Woo, "Strain map of the tongue in normal and ALS speech patterns from tagged and diffusion MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi)
• X. Wang, M. Stone, J.L. Prince, and A.D. Gomez, "A novel filtering approach for 3D harmonic phase analysis of tagged MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi)
• A.A. Tolpadi, M.L. Stone, A. Carass, J.L. Prince, and A.D. Gomez, "Inverse Biomechanical Modeling via Machine Learning using Synthetic Training Data", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi) (PubMed)
• L. Zuo, A. Carass, S. Han, and J.L. Prince, "Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi)
• M. Shao, A. Carass, X. Li, B.E. Dewey, A.M. Blitz, J.L. Prince, and L.M. Ellingsen, "Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricles atlas", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi) (PubMed)
• S. Goyal, C. Zhao, A. Jog, J.L. Prince, and A. Carass, "Improving Self Super Resolution in Magnetic Resonance Images", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi)
• S. Reaungamornrat, A. Carass, Y. He, S. Saidha, P.A. Calabresi, and J.L. Prince, "Inter-scanner Variation Independent Descriptors for Constrained Diffeomorphic Demons Registration of Retinal OCT", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi) (PubMed)
• J. Glaister, M. Shao, X. Li, A. Carass, S. Roy, A.M. Blitz, J.L. Prince, and L.M. Ellingsen, "Deformable model reconstruction of the subarachnoid space", Proceedings of SPIE Medical Imaging (SPIE-MI 2018), Houston, TX, February 10 - 15, 2018. (doi) (PubMed)
• J. Woo, F. Xing, M. Stone, J. Green, T.G. Reese, T.J. Brady, V.J. Wedeen, J.L. Prince, and G. El Fakhri, "Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-13, 2018. (doi)
• C Ye and J.L. Prince, "Dictionary-based fiber orientation estimation with improved spatial consistency", Medical Image Analysis, 44:41-53, 2018. (doi) (PubMed)
• A. Lang, A. Carass, B.M. Jedynak, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Intensity inhomogeneity correction of SD-OCT data using macular flatspace", Medical Image Analysis, 43:85-97, 2018. (doi) (PubMed)

2017

• N. Gonzalez Caldito, B. Antony, Y. He, A. Lang, J. Nguyen, A. Rothman, E. Ogbuokiri, A. Avornu, L. Balcer, E. Frohman, T.C. Frohman, P. Bhargava, J. Prince, P.A Calabresi, and S. Saidha, "Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans", Current eye research, 43(3):415-423, 2017. (doi)
• D.L. Grimm, M. Stone, J. Woo, J. Lee, J.H. Hwang, G.E. Bedrosian, and J.L. Prince, "The Effects of Palate Features and Glossectomy Surgery on /s/ Production", Journal of Speech, Language, and Hearing Research, 60(12):3417-3425, 2017. (doi) (PubMed)
• A.D. Gomez, A. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "Group Patterns of Acceleration-Induced Brain Deformation in Vivo", Computational Biomechanics for Medicine Workshop XII at the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017.
• I. Oguz, A. Carass, D.L. Pham, S. Roy, N. Subbana, P.A. Calabresi, P.A. Yushkevich, R.T. Shinohara, and J.L. Prince, "Dice overlap measures for multiple objects: Application to lesion segmentation", Brain Lesion Workshop, in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi) (PubMed)
• A. Carass, M. Shao, X. Li, B. Tran, B.E. Dewey, A.M. Blitz, S. Roy, J.L. Prince, and L.M. Ellingsen, "Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients", 3^rd International Workshop on Patch-based Techniques in Medical Imaging in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi) (PubMed)
• J. Glaister, A. Carass, D.L. Pham, J.A. Butman, and J.L. Prince, "Falx Cerebri Segmentation via Multiatlas Boundary Fusion", 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi) (PubMed)
• Y. He, A. Carass, Y. Yun, C. Zhao, B.M. Jedynak, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Towards topological correct segmentation of macular OCT from cascaded FCNs", 4^th Ophthalmic Medical Image Analysis Workshop in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi)
• C. Zhao, A. Carass, J. Lee, Y. He, and J.L. Prince, "Whole brain segmentation and labeling from CT using synthetic MR images", Eighth International Workshop on Machine Learning in Medical Imaging (MLMI 2017), Quebec, Canada, September 10, 2017. (doi)
• C. Zhao, A. Carass, A. Jog, J. Lee, and J.L. Prince, "A super-voxel based random forest synthesis framework for bidirectional MR/CT synthesis", Simulation and Synthesis in Medical Imaging (SASHIMI 2017) in conjunction with the 20^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2017), Quebec, Canada, September 10 - 14, 2017. (doi)
• F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince, "Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 36(10):2116-2128, 2017. (doi) (PubMed)
• B.J. Antony, B.-J. Kim, A. Lang, A. Carass, J.L. Prince, and D.J. Zack, "Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model", PLoS ONE, 12(8):e0181059, 2017. (doi) (PubMed)
• A.D. Gomez, A. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "Full-Field 4D Measurements of Acceleration-Induced Deformation in the Living Human Brain", 14^th US National Congress on Computational Mechanics (USNCCM), Montreal, Canada, July 2017.
• J. Glaister, A. Carass, T. NessAiver, J.V. Stough, S. Saidha, P.A. Calabresi, and J.L. Prince, "Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort", NeuroImage, 158:430-440, 2017. (doi) (PubMed)
• J. Lee, O.Y. Mian, Y. Le, H.J. Bae, E.C. Burdette, T.L. DeWeese, J.L. Prince, and D.Y. Song, "Intraoperative Registered Ultrasound and Fluoroscopy (iRUF) for dose calculation during prostate brachytherapy: Improved accuracy compared to standard ultrasound-based dosimetry", Radiother Oncol, 124(1):61-67, 2017. (doi) (PubMed)
• A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham, "Longitudinal multiple sclerosis lesion segmentation data resource", Data in Brief, 12:346-350, 2017. (doi) (PubMed)
• S. Ganpule, N.P. Daphalapurkar, K.T. Ramesh, A.K. Knutsen, D.L. Pham, P.V. Bayly, and J.L. Prince, "A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics", J. Neurotrauma, 34(13):2154-2166, 2017. (doi) (PubMed)
• L. Pereira, R.D. Airan, A. Fishman, J.J. Pillai, K. Kansal, C.U. Onyike, J.L. Prince, S.H. Ying, and H.I. Sair, "Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)", Human Brain Mapping, 38(6):3001-3010, 2017. (doi) (PubMed)
• F. Xing, J.L. Prince, M.L. Stone, V.J. Wedeen, G. El Fakhri, and J. Woo, "A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• B.E. Dewey, A. Carass, A.M. Blitz, and J.L. Prince, "Efficient Multi-Atlas Registration using an Intermediate Template Image", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• J.A. Ramsey, A.D. Gomez, and J.L. Prince, "Test-suite for image-based motion estimation of the brain and tongue", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• B.J. Antony, A. Carass, A. Lang, B.-J. Kim, D.J. Zack, and J.L. Prince, "Longitudinal Analysis of Mouse SDOCT Volumes", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• J. Glaister, A. Carass, D. L. Pham, and J.L. Prince, "Automatic falx cerebri and tentorium cerebelli segmentation from Magnetic Resonance Images", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• A. Lang, A. Carass, A.K. Bittner, H.S. Ying, and J.L. Prince, "Improving graph-based OCT segmentation for severe pathology in Retinitis Pigmentosa patients", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• J. Lee, A. Carass, A. Jog, C. Zhao, and J. L. Prince, "Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• Y. Yun, A. Carass, A. Lang, J.L. Prince, and B.J. Antony, "Collaborative SDOCT Segmentation and Analysis Software", Proceedings of SPIE Medical Imaging (SPIE-MI 2017), Orlando, FL, February 11 - 16, 2017. (doi) (PubMed)
• A. Carass, S. Roy, A. Jog, J.L. Cuzzocreo, E. Magrath, A. Gherman, J. Button, J. Nguyen, F. Prados, C.H. Sudre, M.J. Cardoso, N. Cawley, O. Ciccarelli, C.A.M. Wheeler-Kingshott, S. Ourselin, L. Catanese, H. Deshpande, P. Maurel, O. Commowick, C. Barillot, X. Tomas-Fernandez, S.K. Warfield, S. Vaidya, A. Chunduru, R. Muthuganapathy, G. Krishnamurthi, A. Jesson, T. Arbel, O. Maier, H. Handels, L.O. Iheme, D. Unay, S. Jain, D.M. Sima, D. Smeets, M. Ghafoorian, B. Platel, A. Birenbaum, H. Greenspan, P.-L. Bazin, P.A. Calabresi, C.M. Crainiceanu, L.M. Ellingsen, D.S. Reich, J.L. Prince, and D.L. Pham, "Longitudinal Multiple Sclerosis Lesion Segmentation: Resource and Challenge", NeuroImage, 148(C):77-102, 2017. (doi) (PubMed)
• K. Kansal, Z. Yang, A.M. Fishman, H.I. Sair, S.H. Ying, B.M. Jedynak, J.L. Prince, C.U. Onyike, "Structural cerebellar correlates of cognitive and motor dysfunctions in cerebellar degeneration", Brain, 140(3):707-720, 2017. (doi) (PubMed)
• M. Chen, A. Carass, A. Jog, J. Lee, S. Roy, and J.L. Prince, "Cross contrast multi-channel image registration using image synthesis for MR brain images", Medical Image Analysis, 36(2):2-14, 2017. (doi) (PubMed)
• C Ye and J.L. Prince, "Probabilistic tractography using Lasso bootstrap", Medical Image Analysis, 35:544-553, 2017. (doi) (PubMed)
• A. Jog, A. Carass, S. Roy, D.L. Pham, and J.L. Prince, "Random Forest Regression for Magnetic Resonance Image Synthesis", Medical Image Analysis, 35:475-488, 2017. (doi) (PubMed)

2016

• C. Ye and J.L. Prince, "A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation", Computerized Medical Imaging and Graphics, 54:35-47, 2016. (doi) (PubMed)
• S. Reaungamornrat, T. De Silva, A. Uneri, S. Vogt, G. Kleinszig, A.J. Khanna, J.-P. Wolinsky, J.L. Prince, and J.H. Siewerdsen, "MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery", IEEE Trans. on Medical Imaging, 35(11):2413-2424, 2016. (doi) (PubMed)
• S. Roy, Y.-Y. Chou, A. Jog, J. Butman, and D.L. Pham, "Patch Based Synthesis of Whole Head MR Images: Application to EPI Distortion Correction", SASHIMI: Simulation and Synthesis in Medical Imaging Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016. (doi)
• A. Jog, A. Carass, and J.L. Prince, "Self Super-resolution for Magnetic Resonance Images", 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016. (doi)
• A.D. Gomez, F. Xing, D. Chan, D.L. Pham, P. Bayly, and J.L. Prince, "Motion Estimation with Finite-Element Biomechanical Models and Tracking Constraints from Tagged MRI", Computational Biomechanics for Medicine XI Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016.
• F. Xing, J. Woo, A.D. Gomez, D.L. Pham, P.V. Bayly, M. Stone, and J.L. Prince, "Incompressible Phase Registration for Motion Estimation from Tagged Magnetic Resonance Images", Reconstruction and Analysis of Moving Body Organs‎ (RAMBO 2016) Workshop at the 19^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2016), Athens, Greece, October 17 - 21, 2016. (doi)
• S. Roy, A. Carass, J. Pacheco, M. Bilgel, S.M. Resnick, J.L. Prince, and D.L. Pham, "Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation", NeuroImage: Clinical, 11:264-275, 2016. (doi)
• Y. Huo, A.J. Plassard, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landmann, "Consistent Cortical Reconstruction and Multi-atlas Brain Segmentation", NeuroImage, 138:197-210, 2016. (doi)
• C. Ye, J. Zhuo, R.P. Gullapalli, and J.L. Prince, "Estimation of fiber orientations using neighborhood information", Medical Image Analysis, 32:243-256, 2016. (doi)
• M. Bilgel, J.L. Prince, D.F. Wong, S.M. Resnick, and B.M. Jedynak, "A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging", NeuroImage, 134:658-670, 2016. (doi)
• F. Xing, J.L. Prince, and B.A. Landman, "Investigation of Bias in Continuous Medical Image Label Fusion", PloS One, 11(6):e0155862, 2016. (doi)
• F. Xing, J. Woo, J. Lee, E.Z. Murano, M. Stone, and J.L. Prince, "Analysis of 3-D Tongue Motion From Tagged and Cine Magnetic Resonance Images", Jrnl. of Speech, Language, and Hearing Research, 59(3):468-479, 2016. (doi)
• Z. Yang, C. Ye, J.A. Bogovic, A. Carass, B.M. Jedynak, S.H. Ying, and J.L. Prince, "Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease", NeuroImage, 127:435-444, 2016. (doi)
• E. Dehghan, Y. Le, J. Lee, D. Song, G. Fichtinger, and J.L. Prince, "CT and MRI Fusion for Postimplant Prostate Brachytherapy Evaluation", 13^th IEEE International Symposium on Biomedical Imaging (ISBI 2016), Prague, Czech Republic, April 13 - 16, 2016. (doi)
• A. Lang, A. Carass, B.M. Jedynak, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Intensity Inhomogeneity Correction of Macular OCT Using N3 and Retinal Flatspace", 13^th IEEE International Symposium on Biomedical Imaging (ISBI 2016), Prague, Czech Republic, April 13 - 16, 2016. (doi) (PubMed) (PMCID 5042207)
• D. Coon, L. Chen, E.M. Boctor, J.L. Prince, and B. Bojovic, "Proof-of-Concept Studies for Marker-Based Ultrasound Doppler Analysis of Microvascular Anastomoses in a Modified Large Animal Model", Jrnl. of Reconstructive Microsurgery, 32(04):251-255, 2016. (doi)
• M. Bilgel, Y. An, Y. Zhou, D.F. Wong, J.L. Prince, L. Ferrucci, and S.M. Resnick, "Individual estimates of age at detectable amyloid onset for risk factor assessment", Alzheimer's & Dementia, 12(4):373-379, 2016. (doi) (PubMed) (PMCID 4841700)
• J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-12, 2016. (doi)
• M. Stone, J. Woo, J. Lee, T. Poole, A. Seagraves, M. Chung, E. Kim, E.Z Murano, J.L. Prince, and S.S. Blemker, "Structure and variability in human tongue muscle anatomy", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 1-9, 2016. (doi)
• L. Liu, J. Glaister, X. Sun, A. Carass, T.D. Tran, and J.L. Prince, "Segmentation of Thalamus from MR images via Task-Driven Dictionary Learning", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• S.M. Abulnaga, Z. Yang, A. Carass, K. Kansal, B.M. Jedynak, C.U. Onyike, S.H. Ying, and J.L. Prince, "A toolbox to visually explore cerebellar sub-structure shape changes in cerebellar ataxia", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• Z. Yang, S.M. Abulnaga, A. Carass, K. Kansal, B.M. Jedynak, C. Onyike, S.H. Ying, and J.L. Prince, "Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Structural Change Pattern Visualization", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• J. Glaister, A. Carass, J.V. Stough, P.A. Calabresi, and J.L. Prince, "Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• Y. Huo, A. Carass, S.M. Resnick, D.L. Pham, J.L. Prince, and B.A. Landman, "Combining Multi-atlas Segmentation with Brain Surface Estimation", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• L.M. Ellingsen, S. Roy, A. Carass, D.L. Pham, A.M. Blitz, and J.L. Prince, "Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)
• A.J. Plassard, Z. Yang, S. Rane, J.L. Prince, D.O. Claassen, and B.A. Landman, "Improving cerebellar segmentation with statistical fusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• K. Li, C. Ye, Z. Yang, A. Carass, S.H. Ying, and J.L. Prince, "Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi) (PubMed)
• C. Zhao, A. Carass, A. Jog, and J.L. Prince, "Effects of Spatial Resolution on Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi) (PubMed)
• S. Reaungamornrat, T. De Silva, A. Uneri, J.-P. Wolinsky, A.J. Khanna, G. Klienszig, S. Vogt, J.L. Prince, and J.H. Siewerdsen, "MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (doi)
• A. Lang, A. Carass, O. Al-Louzi, P. Bhargava, S.D. Solomon, P.A. Calabresi, and J.L. Prince, "Combined registration and motion correction of longitudinal retinal OCT data", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)
• B.J. Antony, M. Chen, A. Carass, B.M. Jedynak, O. Al-Louzi, S.D. Solomon, S. Saidha, P.A. Calabresi, and J.L. Prince, "Voxel Based Morphometry in Optical Coherence Tomography: Validation & Core Findings", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)
• B.J. Antony, A. Lang, E.K. Swingle, O. Al-Louzi, A. Carass, S.D. Solomon, P.A. Calabresi, S. Saidha, and J.L. Prince, "Simultaneous Segmentation of Retinal Surfaces and Microcystic Macular Edema in SDOCT Volumes", Proceedings of SPIE Medical Imaging (SPIE-MI 2016), San Diego, CA, February 27 - March 3, 2016. (PDF) (doi)

2015

• B. Ibragimov, J.L. Prince, E.Z. Murano, J. Woo, M. Stone, B. Likar, F. Pernuš, and T. Vrtovec, "Segmentation of tongue muscles from super-resolution magnetic resonance images", Medical Image Analysis, 20(1):198-207, 2015. (doi) (PubMed)
• J. Woo, J. Lee, E.Z. Murano, F. Xing, M. Al-Talib, M. Stone, and J.L. Prince, "A high-resolution atlas and statistical model of the vocal tract from structural MRI", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 3(1):1-14, 2015. (doi) (PubMed)
• M. Bilgel, A. Carass, S.M. Resnick, D.F. Wong, and J.L. Prince, "Deformation field correction for spatial normalization of PET images", NeuroImage, 119:152-163, 2015. (doi) (PubMed)
• S. Roy, Q. He, E. Sweeney, A. Carass, D.S. Reich, J.L. Prince, and D.L. Pham, "Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation", IEEE Journal of Biomedical and Health Informatics, 19(5):1598-1609, 2015. (doi) (PubMed)
• C. Ye, Z. Yang, S.H. Ying, and J.L. Prince, "Segmentation of the Cerebellar Peduncles Using a Random Forest Classifier and a Multi-object Geometric Deformable Model: Application to Spinocerebellar Ataxia Type 6", Neuroinformatics, 13(3):367-381, 2015. (doi) (PubMed)
• J. Oh, E.S. Sotirchos, S. Saidha, A. Whetstone, M. Chen, S.D. Newsome, K. Zackowski, L.J. Balcer, E. Frohman, J.L. Prince, M. Diener-West, D.S. Reich, and P.A. Calabresi, "Relationships between quantitative spinal cord MRI and retinal layers in multiple sclerosis", Neurology, 84(7): 720-728, 2015. (doi) (PubMed)
• S. Roy, A. Carass, J.L. Prince, and D.L. Pham, "Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions", Sixth International Workshop on Machine Learning in Medical Imaging (MLMI 2015), Munich, Germany, October 5, 2015. (doi) (PubMed)
• M. Bilgel, B. Jedynak, D.F. Wong, S.M. Resnick, and J.L. Prince, "Temporal Trajectory and Progression Score Estimation from Voxelwise Longitudinal Imaging Measures: Application to Amyloid Imaging", 24^th Conference on Information Processing in Medical Imaging (IPMI 2015), Isle of Skye, Scotland, June 28 - July 3, 2015. (doi) (PubMed)
• J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "Construction of An Unbiased Spatio-Temporal Atlas of the Tongue During Speech", 24^th Conference on Information Processing in Medical Imaging (IPMI 2015), Isle of Skye, Scotland, June 28 - July 3, 2015. (doi) (PubMed)
• A. Jog, A. Carass, D.L. Pham, and J.L. Prince, "Tree-Encoded Conditional Random Fields for Image Synthesis", 24^th Conference on Information Processing in Medical Imaging (IPMI 2015), Isle of Skye, Scotland, June 28 - July 3, 2015. (doi) (PubMed)
• B.M. Jedynak, B. Liu, A. Lang, Y. Gel, and J.L. Prince, "A computational method for computing an Alzheimer's Disease Progression Score; experiments and validation with the ADNI dataset", Neurobiology of Aging, 36(S1):S178-S184, 2015. (doi) (PubMed)
• J. Woo, M. Stone, and J.L. Prince, "Multimodal Registration via Mutual Information Incorporating Geometric and Spatial Context", IEEE Trans. on Image Processing, 24(2):757-769, 2015. (doi) (PubMed)
• P. Bhargava, A. Lang, O. Al-Louzi, A. Carass, J.L. Prince, P.A. Calabresi, and S. Saidha, "Applying an open-source segmentation algorithm to different OCT devices in Multiple Sclerosis patients and healthy controls: implications for clinical trials", Multiple Sclerosis International, Article ID 136295, 2015. (doi) (PubMed)
• G.A. Sigurdsson, Z. Yang, T.D. Tran, J.L. Prince, "Interpretable exemplar-based shape classification using constrained sparse linear models", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21-26, 2015. (doi)
• F. Xing, C. Ye, J. Woo, M.L. Stone, and J.L. Prince, "Relating speech production to tongue muscle compressions using tagged and high-resolution magnetic resonance imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21-26, 2015. (doi) (PubMed)
• A. Jog, A. Carass, D.L. Pham, and J.L. Prince, "Multi-output decision trees for lesion segmentation in multiple sclerosis", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21-26, 2015. (doi) (PubMed)
• M. Chen, A. Jog, A. Carass, and J.L. Prince, "Using image synthesis for multi-channel registration of different image modalities", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21-26, 2015. (doi) (PubMed)
• E.K. Swingle, A. Lang, A. Carass, O. Al-Louzi, J.L. Prince, and P.A. Calabresi, "Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21-26, 2015. (doi) (PubMed)
• A. Lang, A. Carass, O. Al-Louzi, P. Bhargava, S. Saidha, H.S. Ying, P.A. Calabresi, and J.L. Prince, "Longitudinal graph-based segmentation of macular OCT using fundus alignment", Proceedings of SPIE Medical Imaging (SPIE-MI 2015), Orlando, FL, February 21-26, 2015. (doi) (PubMed)
• A. Lang, A. Carass, E.K. Swingle, O. Al-Louzi, P. Bhargava, S. Saidha, H.S. Ying, P.A. Calabresi, and J.L. Prince, "Automatic segmentation of microcystic macular edema in OCT", Biomedical Optics Express, 6(1):155-169, 2015. (doi) (PubMed)

2014

• C. Ye, A. Carass, E. Murano, M. Stone, and J.L. Prince, "A Bayesian Approach to Distinguishing Interdigitated Muscles in the Tongue from Limited Diffusion Weighted Imaging", MICCAI Workshop on Bayesian and Graphical Models for Biomedical Imaging (BAMBI 2014), Boston, MA, September 18, 2014. (doi)
• J. Woo, F. Xing, J. Lee, M. Stone, and J.L. Prince, "Determining Functional Units of Tongue Motion via Graph-regularized Sparse Non-negative Matrix Factorization", 17^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2014), Boston, MA, September 14-18, 2014. (doi)
• J.V. Stough, J. Glaister, C. Ye, S.H. Ying, J.L. Prince, and A. Carass, "Automatic method for thalamus parcellation using multi-modal feature classification", 17^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2014), Boston, MA, September 14-18, 2014. (PDF) (doi)
• Z. Yang, S. Zhong, A. Carass, S. Ying, and J.L. Prince, "Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression", Fifth International Workshop on Machine Learning in Medical Imaging (MLMI 2014), Boston, MA, September 14, 2014. (doi)
• S. Roy, A. Carass, J.L. Prince, and D.L. Pham, "Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation", Fifth International Workshop on Machine Learning in Medical Imaging (MLMI 2014), Boston, MA, September 14, 2014. (doi)
• M. Bilgel, A. Carass, S.M. Resnick, D.F. Wong, J.L. Prince, "Deformation Field Correction for Spatial Normalization of PET Images Using a Population-Derived Partial Least Squares Model", Fifth International Workshop on Machine Learning in Medical Imaging (MLMI 2014), Boston, MA, September 14, 2014. (doi) (PubMed)
• J. Lee, J. Woo, F. Xing, E. Murano, M. Stone, and J.L. Prince, "Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI", Computerized Medical Imaging and Graphics, 38(8):714-724, 2014. (doi)
• J. Woo, M. Stone, Y. Suo, E.Z. Murano, and J.L. Prince, "Tissue-Point Motion Tracking in the Tongue From Cine MRI and Tagged MRI", Journal of Speech, Language, and Hearing Research, 57(2):S626-S636, 2014. (doi)
• S. Roy, W.-T. Wang, A. Carass, J.L. Prince, J.A. Butman, and D.L. Pham, "PET Attenuation Correction Using Synthetic CT from Ultrashort Echo-Time MR Imaging", Jrnl. of Nuclear Medicine, 55:1-7, 2014. (doi)
• M. Bilgel, Y. An, A. Lang, J. Prince, L. Ferrucci, B. Jedynak, and S.M. Resnick, "Trajectories of Alzheimer disease-related cognitive measures in a longitudinal sample", Alzheimer’s & Dementia, 10(6):735–742, 2014. (doi)
• J. Oh, M. Seigo, S. Saidha, E. Sotirchos, K. Zackowski, M. Chen, J.L. Prince, M. Diener-West, P.A. Calabresi, and D.S. Reich, "Spinal Cord Normalization in Multiple Sclerosis", Journal of NeuroImaging, 24(6):577-584, 2014. (doi)
• N.Shiee, P.-L. Bazin, J.L. Cuzzocreo, C. Ye, B. Kishore, A. Carass, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Robust Reconstruction of the Human Brain Cortex in the Presence of the WM Lesions: Method and Validation", Human Brain Mapping, 35(7):3385-3401, 2014. (doi)
• M.E. Ranta, M. Chen, D. Crocetti, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky, "Automated MRI parcellation of the frontal lobe", Human Brain Mapping, 35(5):2009-2026, 2014. (doi)
• P.A. Nyquist, M.S. Bilgel, R. Gottesman, L.R. Yanek, T.F. Moy, L.C. Becker, J. Cuzzocreo, J. Prince, D.M. Yousem, D.M. Becker, B.G. Kral, and D. Vaidya, "Extreme Deep White Matter Hyperintensity Volumes Are Associated with African American Race", Cerebrovascular Diseases, 37(4):244-250, 2014. (doi)
• N. Kuo, E. Dehghan, A. Deguet, E. C. Burdette, G. Fichtinger, J. L. Prince, D. Y. Song, and J. Lee, "An image-guidance system for dynamic dosimetry in prostate brachytherapy using ultrasound and fluoroscopy", Medical Physics, 41(9):091712, 2014. (doi)
• M.A.L. Bell, N.P. Kuo, D.Y. Song, J. Kang, and E.M. Boctor, "In vivo photoacoustic imaging of prostate brachytherapy seeds", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014. (doi)
• M.A.L. Bell, N. Kuo, D.Y. Song, and E.M. Boctor, "Short-lag spatial coherence beamforming of photoacoustic images for enhanced visualization of prostate brachytherapy seeds", Biomedical Optics Express, 4(10):1964-1977, 2014. (doi)
• M. Chen, A. Lang, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass, "Analysis of macular OCT images using deformable registration", Biomedical Optics Express, 5(7):2196-2214, 2014. (PDF) (doi)
• A. Carass, A. Lang, M. Hauser, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Multiple-object geometric deformable model for segmentation of macular OCT", Biomedical Optics Express, 5(4):1062-1074, 2014. (PDF) (doi)
• A. Jog, A. Carass, D.L. Pham, and J.L. Prince, "Random Forest FLAIR reconstruction from T1, T2, and PD-weighted MRI", 11th IEEE International Symposium on Biomedical Imaging (ISBI 2014), Beijing, China, April 28 - May 2, 2014. (doi)
• A. Jog, A. Carass, and J.L. Prince, "Improving Magnetic Resonance Resolution with Supervised Learning", 11th IEEE International Symposium on Biomedical Imaging (ISBI 2014), Beijing, China, April 28 - May 2, 2014. (doi)
• S. Roy, Q. He, A. Jog, A. Carass, J.L. Prince, and D.L. Pham, "Example based lesion segmentation", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014. (doi)
• S. Roy, A. Carass, A. Jog, J.L. Prince, and J. Lee, "MR to CT registration of brains using image synthesis", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014. (doi)
• G.A. Sigurdsson and J.L. Prince, "Smoothing fields of weighted collections with applications to diffusion MRI processing", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014. (doi)
• A. Lang, A. Carass, P.A. Calabresi, H.S. Ying, and J.L. Prince, "An adaptive grid for graph-based segmentation in macular cube OCT", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014. (doi)
• E.K. Swingle, A. Carass, A. Lang, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Microcystic macular edema detection in retina OCT images", Proceedings of SPIE Medical Imaging (SPIE-MI 2014), San Diego, CA, February 15-20, 2014. (doi)

2013

• S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Example Based Contrast Synthesis", IEEE Trans. on Medical Imaging, 32(12):2348-2363, 2013. (PDF) (doi)
• M. Chen, A. Carass, J. Oh, G. Nair, D.L. Pham, D.S. Reich, and J.L. Prince, "Automatic Magnetic Resonance Spinal Cord Segmentation with Topology Constraints for Variable Fields of View", NeuroImage, 83:1051-1062, 2013. (PDF) (doi)
• F. Xing, J. Woo, E.Z. Murano, J. Lee, M. Stone, and J.L. Prince, "3D Tongue Motion from Tagged and Cine MR Images", 16^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2013), Nagoya, Japan, September 22-26, 2013. (PDF) (doi)
• A. Jog, S. Roy, J.L. Prince, and A. Carass, "MR Brain Segmentation using Decision Trees", MICCAI Grand Challenge on MR Brain Image Segmentation (MRBrainS13), Nagoya, Japan, September 26, 2013.
• S. Roy, A. Jog, A. Carass, and J.L. Prince, "Atlas Based Intensity Transformation of Brain MR Images", MICCAI Third International Workshop on Multimodal Brain Image Analysis (MBIA 2013). (doi)
• Z. Yang, J.A. Bogovic, C. Ye, A. Carass, S.H. Ying, and J.L. Prince, "Automated Cerebellar Lobule Segmentation using Graph Cuts", MICCAI Challenge Workshop on Segmentation: Algorithms, Theory and Applications (SATA 2013), Nagoya, Japan, September 26, 2013. (PDF)
• A.K. Knutsen, E. Magrath, J. McEntee, J.L. Prince, P. Bayly, J. Butman, and D.L. Pham, "Improved measurement of Brain Deformation during a Mild Acceleration using Tagged MRI", Journal of Neurotrauma, 30(15):A114-A115, August 2013. (doi)
• J.A. Bogovic, B. Jedynak, R. Rigg, A. Du, B.A. Landman, J.L. Prince, and S.H. Ying, "Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters", NeuroImage, 64(1):616-629, 2013. (PDF) (doi) (PubMed)
• J.A. Bogovic, J.L. Prince, and P.-L. Bazin, "A Multiple Object Geometric Deformable Model for Image Segmentation", Computer Vision and Image Understanding, 117(2):145-157, 2013. (PDF) (doi) (PubMed)
• J.A. Bogovic, P.L. Bazin, S.H. Ying, and J.L. Prince, "Automated Segmentation of the Cerebellar Lobules using Boundary Specific Classification and Evolution", 23^rd Conference on Information Processing in Medical Imaging (IPMI 2013), Asilomar California, USA, June 29 - July 3, 2013. (PDF) (doi)
• D. Song, Y. Le, J. Lee, N. Kuo, A. Robinson, A. Deguet, E. Burdette, G. Fichtinger, and J.L. Prince, "Dynamic Dosimetry Using Ultrasound-Fluoroscopy Registration Identifies Cold Spots Intraoperatively During LDR Prostate Brachytherapy", International Journal of Radiation Oncology Biology Physics, 87(2):S379, October 2013. (doi)
• A. Lang, A. Carass, M. Hauser, E.S. Sotirchos, P.A. Calabresi, H.S. Ying, and J.L. Prince, "Retinal layer segmentation of macular OCT images using boundary classification", Biomedical Optics Express, 4(7):1133-1152, 2013. (PDF) (doi) (PMCID 3704094)
• J. Lee, J. Woo, F. Xing, E.Z. Murano, M. Stone, and J.L. Prince, "Semi-automatic segmentation of the tongue for 3D motion analysis with dynamic MRI", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi)
• F. Xing, E.Z. Murano, J. Lee, J. Woo, M. Stone, and J.L. Prince, "MRI Analysis of 3D normal and Post-glossectomy Tongue Motion in Speech", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi)
• J. Stough, C. Ye, S.H. Ying, and J.L. Prince, "Thalamic Parcellation from Multi-Modal Data using Random Forest Learning", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi) (PubMed) (PMCID 3799867)
• C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince, "Segmentation of the Complete Superior Cerebellar Peduncles using a Multi-object Geometric Deformable Model", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi)
• S. Roy, A. Carass, and J.L. Prince, "Patch Based Intensity Normalization of Brain MR Images", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi) (PubMed) (PMCID 3892712)
• S. Roy, A. Carass, N. Shiee, D.L. Pham, P.A. Calabresi, D.S. Reich, and J.L. Prince, "Longitudinal Intensity Normalization in the presence of Multiple Sclerosis Lesions", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi)
• A. Jog, S. Roy, A. Carass, and J.L. Prince, "Magnetic Resonance Image Synthesis through Patch Regression", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi) (PMCID 3892700)
• Z. Yang, A. Carass, and J.L. Prince, "Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi) (PubMed) (PMCID 3842598)
• M. Chen, A. Lang, E. Sotirchos, H.S. Ying, P.A. Calabresi, J.L. Prince, and A. Carass, "Deformable Registration of Macular OCT Using A-mode Scan Similarity", Tenth IEEE International Symposium on Biomedical Imaging (ISBI 2013), San Francisco, CA, April 7 - 11, 2013. (PDF) (doi) (PMCID 3892764)
• M. Bilgel, S. Roy, A. Carass, P.A. Nyquist, and J.L. Prince, "Automated Anatomical Labeling of the Cerebral Arteries using Belief Propagation", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)
• M. Chen, A. Carass, D.S. Reich, P.A. Calabresi, D.L. Pham, and J.L. Prince, "Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)
• A. Jog, S. Roy, A. Carass, and J.L. Prince, "Pulse Sequence based Multi-acquisition MR Intensity Normalization", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)
• S. Roy, A. Carass, and J.L. Prince, "Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)
• C. Ye, J.A. Bogovic, S.H. Ying, and J.L. Prince, "Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)
• Z. Yang, J.A. Bogovic, A. Carass, M. Ye, P.C. Searson, and J.L. Prince, "Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model (MGDM)", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)
• N. Kuo, E. Dehgan, A. Deguet, D.Y. Song, J.L. Prince, and J. Lee, "A dynamic dosimetry system for prostate brachytherapy", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)
• A. Lang, A. Carass, E. Sotirchos, and J.L. Prince, "Segmentation of Retinal OCT Images using a Random Forest Classifier", Proceedings of SPIE Medical Imaging (SPIE-MI 2013), Orlando, FL, February 9-14, 2013. (PDF) (doi)

2012

• F. Xing, J. Lee, E.Z. Murano, J. Woo, M. Stone, and J.L. Prince, "Estimating 3D Tongue Motion with MR Images", Asilomar Conference on Signals, Systems, and Computers, Pacific Grove, California, November 2012.
• P.G. Unschuld, R.A.E. Edden, A. Carass, X. Liu, M. Shanahan, X. Wang, K. Oishi, J. Brandt, S.S. Bassett, G.W. Redgrave, R.L. Margolis, P.C.M. van Zijl, P.B. Barker, and C.A. Ross, "Brain metabolite alterations and cognitive dysfunction in early Huntington's disease", Movement Disorders, 27(7):895-902, June 2012. (doi) (PubMed)
• N. Kuo, H.J. Kang, D.Y. Song, J.U. Kang, and E.M. Boctor, "Real-time Photoacoustic Imaging of Prostate Brachytherapy Seeds Using a Clinical Ultrasound System", Journal of Biomedical Optics, 17(6):066005, 2012. (doi)
• E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, Y. Le, E.C. Burdette, D.Y. Song, J.L. Prince, and G. Fichtinger, "Ultrasound-Fluoroscopy Registration for Prostate Brachytherapy Dosimetry", Medical Image Analysis, 16(7):1347-1358, 2012. (PDF) (doi)
• J. Lee, J.W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A.J. Khanna, J.L. Prince, and J.H. Siewerdsen, "Volume-of-Change Cone-Beam CT for Image-Guided Surgery", Physics in Medicine and Biology, 57(15):64-77, 2012. (PDF) (doi)
• N. Kuo, A. Deguet, D.Y. Song, E.C. Burdette, J.L. Prince, and J. Lee, "Automatic segmentation of radiographic fiducial and seeds from X-ray images in prostate brachytherapy", Medical Engineering & Physics, 34(1):64-77, 2012. (PDF) (doi) (PubMed) (PMCID 3209498)
• Z. Yang, A. Carass, and J.L. Prince, "Automatic Sulcal Curve Extraction with MRF Based Shape Prior", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012. (PDF) (doi)
• C. Ye, J.A. Bogovic, P-L Bazin, J.L. Prince, and S.H. Ying, "Fully Automatic Segmentation of the dentate nucleus using diffusion weighted images", Ninth IEEE International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012. (PDF) (doi)
• Z. Yang, A. Carass, C. Chen, and J.L. Prince, "Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF) (doi)
• F. Xing, A.J. Asman, J.L. Prince, and B.A. Landman, "Finding Seeds for Segmentation Using Statistical Fusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF) (doi)
• J. Woo, Y. Bai, S. Roy, E. Murano, M. Stone, and J.L. Prince, "Super-resolution reconstruction for tongue MR images", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF) (doi)
• J. Lee, J.W. Stayman, Y. Otake, S. Schafer, W. Zbijewski, A.J. Khanna, J.L. Prince, and J.H. Siewerdsen, "Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (PDF) (doi)
• H.J. Kang, N. Kuo, X. Guo, D. Song, J.U. Kang, and E.M. Boctor, "Software Framework of a Real-time Pre-beamformed RF Data Acquisition of an Ultrasound Research Scanner", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (doi)
• S.Vyas, S. Su, R. Kim, N. Kuo, R.H. Taylor, J.U. Kang, and E.M. Boctor, "Intraoperative Ultrasound to Stereocamera Registration Using Interventional Photoacoustic Imaging", Proceedings of SPIE Medical Imaging (SPIE-MI 2012), San Diego, CA, February 4-9, 2012. (doi)
• B.A. Landman, J.A. Bogovic, H. Wan, F. El Zahraa El-Shahaby, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI", NeuroImage, 59(3):2175–2186, 2012. (PDF) (doi)
• S. Roy, A. Carass, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Consistent Segmentation using a Rician Classifier", Medical Image Analysis, 16(2):524-535, 2012. (PDF) (doi) (PubMed)
• B.A. Landman, A.L. Asman, A.G. Scoggins, J.A. Bogovic, F. Xing, and J.L. Prince, "Robust Statistical Fusion of Image Labels", IEEE Trans. on Medical Imaging, 31(2):512-522, February 2012. (PDF) (doi) (PubMed) (PMCID 3262958)
• B.A. Landman, J.A. Bogovic, A. Carass, M. Chen, S. Roy, N. Shiee, Z. Yang, B. Kishore, D. Pham, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "System for Integrated Neuroimaging Analysis and Processing of Structure", Neuroinformatics, 11(1):91-103, 2012. (PDF) (doi) (PubMed)
• B.A. Landman, A.J. Asman, A.G. Scoggins, J.A. Bogovic, J.A. Stein, and J.L. Prince, "Foibles, follies, and fusion: Web-based collaboration for medical image labelling", NeuroImage, 59(1):530–539, January 2012. (PDF) (doi) (PubMed)
• X. Liu, A. Carass, P.-L. Bazin, and J.L. Prince, "Topology Preserving Brain Tissue Segmentation Using Graph Cuts", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012), Breckenridge, CO, January 9, 2012. (PDF) (doi)

2011

• F. Xing, S. Soleimanifard, B.A. Landman, and J.L. Prince, "Statistical Fusion of Continuous Labels: Identification of Cardiac Landmarks", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi) (PubMed)
• B.C. Jung, S.I. Choi, A.X. Du, J.L. Cuzzocreo, H.S. Ying, B.A. Landman, S.L. Perlman, R.W. Baloh, D.S. Zee, A.W. Toga, J.L. Prince, and S.H. Ying, "MRI Shows a Region-Specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2", The Cerebellum, 1-8, 2011. (doi) (PubMed)
• P.-L. Bazin, C. Ye, J.A. Bogovic, N. Shiee, D.S. Reich, J.L. Prince, and D.L. Pham, "Direct segmentation of the major white matter tracts in diffusion tensor images", NeuroImage, 58(2):458-468, September 2011. (PDF) (doi) (PubMed)
• A. Carass, J. Cuzzocreo, M.B. Wheeler, P.-L. Bazin, S.M. Resnick, and J.L. Prince, "Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis", NeuroImage, 56(4):1982-1992, June 2011. (doi) (PubMed) (PMCID 3105165)
• N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, A. Blitz, and D.L. Pham, "Segmentation of brain images using adaptive atlases with application to ventriculomegaly", 22^nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (doi) (PubMed) (PMCID 3478153)
• S. Roy, A. Carass, and J.L. Prince, "A Compressed Sensing Approach For MR Tissue Contrast Synthesis", 22^nd Conference on Information Processing in Medical Imaging (IPMI 2011), Monastery Irsee, Germany, July 3-8, 2011. (PDF) (doi) (PubMed) (PMCID 3398746)
• H. Huang, J.L. Prince, V. Mishra, A. Carass, B. Landman, D.C. Park, C. Tamminga, R. King, M.I. Miller, P.C.M. van Zijl, and S. Mori, "A framework on surface-based connectivity quantification for the human brain", Journal of Neuroscience Methods, 197(2):324-332, April 2011. (PDF) (doi) (PubMed) (PMCID 3081907)
• A. Carass, M. Chen, J. Cuzzocreo, S.M. Resnick and J.L. Prince, "Skull Stripping Influence on Cortical Surface Reconstruction : A Landmark Validation", 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), Quebec, Canada, June 26-30, 2011.
• N. Shiee, P.-L. Bazin, P.A. Calabresi, D.S. Reich, and D.L. Pham, "Fiber tractography and tract segmentation in multiple sclerosis lesions", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
• M. Chen, A. Carass, J. Cuzzocreo, P.-L. Bazin, D. Reich, and J.L. Prince, "Topology Preserving Automatic Segmentation of the Spinal Cord in Magnetic Resonance Images", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (doi)
• S. Roy, A. Carass, and J.L. Prince, "Compressed Sensing Based Intensity Non-Uniformity Correction", Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, March 30 - April 2, 2011. (PDF) (doi)
• M. Chen, A. Carass, P.-L. Bazin, J.A. Bogovic, and J.L. Prince, "Distance Transforms in Multi Channel MR Image Registration", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi)
• S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince, "Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi)
• F.E.A. ElShahaby, B.A. Landman, and J.L. Prince, "Effect of Regularization Parameter and Scan Time on Crossing Fibers with Constrained Compressed Sensing", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (doi) (PubMed) (PMCID 3087384)
• B.A. Landman, A.J. Huang, A. Gifford, D.S. Vikram, I.A.L. Lim, J.A.D. Farrell, J.A. Bogovic, J. Hua, M. Chen, S. Jarso, S.A. Smith, S. Joel, S. Mori, J.J. Pekar, P.B. Barker, J.L. Prince, and P.C.M. van Zijl, "Multi-parametric neuroimaging reproducibility: A 3-T resource study", NeuroImage, 54(4):2854–2866, 2011. (PDF) (doi) (PubMed) (PMCID 3020263)
• A.J. Asman, A.G. Scoggins, J.L. Prince, and B.A. Landman, "Foibles, Follies, and Fusion: Assessment of Statistical Label Fusion Techniques for Web-Based Collaborations using Minimal Training", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi) (PubMed) (PMCID 3083117)
• J. Lee, N. Kuo, A. Deguet, E. Dehghan, D.Y. Song, E.C. Burdette, and J.L. Prince, "Intraoperative 3-D reconstruction of prostate brachytherapy implants with automatic pose correction", Physics in Medicine and Biology, 56(15):5011-5027, 2011. (PDF) (doi) (PubMed)
• E. Dehghan, J. Lee, P. Fallavollita, N. Kuo, A. Deguet, E.C. Burdette, D. Song, J.L. Prince, and G. Fichtinger, "Point-to-volume registration of prostate implants to ultrasound", 14^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2011), Toronto, Canada, September 18-22, 2011. (PDF) (PubMed) (PMCID 3201745)
• J.W. Staymen, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen, "Using prior images with registration in penalized likelihood estimation for CT with sparse data", The 53rd Annual Meeting of American Association of Physicists in Medicine (AAPM), Vancouver, Canada, July 31-August 4, 2011 (doi)
• G.J. Gang*, J. Lee*, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J.H. Siewerdsen, "Analysis of Fourier-domain task-based detectability index in tomosynthesis and cone-beam CT in relation to human observer performance", Medical Physics, 38(4):1754-1768, 2011, *equal contribution. (PDF) (doi) (PubMed) (PMCID 3069989)
• J.W. Stayman, W. Zbijewski, Y. Otake, S. Schafer, J. Lee, J.L. Prince, and J.H. Siewerdsen, "Penalized-likelihood reconstruction for sparse data acquisitions with unregistered prior images and compressed sensing penalties", Proceedings of SPIE Medical Imaging (SPIE-MI 2011), Orlando, FL, February 12-17, 2011. (PDF) (doi)
• O. Sadowsky, J. Lee, E.G. Sutter, S.J. Wall, J.L. Prince, and R.H. Taylor, "Hybrid cone-beam tomographic reconstruction: Incorporation of prior anatomical models to compensate for missing data", IEEE Trans. on Medical Imaging, 30(1):69-83, January 2011. (PDF) (doi) (PubMed)
• J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "REDMAPS: Reduced-dimensionality matching for prostate brachytherapy seed reconstruction", IEEE Trans. on Medical Imaging, 30(1):38-51, January 2011. (PDF) (doi) (PubMed) (PMCID 3072797)

2010

• X. Liu and J.L. Prince, "Shortest path refinement for motion estimation from tagged MR images", IEEE Trans. on Medical Imaging, 29(8):1560-1572, August 2010. (PDF) (doi) (PubMed)
• M. Stone, X. Liu, H. Chen, and J.L. Prince, "A preliminary application of principal components and cluster analysis to internal tongue deformation patterns", Computer Methods in Biomechanics and Biomedical Engineering, 13(4):493-503, August 2010. (PDF) (doi) (PubMed) (PMCID 3046779)
• E.Z. Murano, H. Shinagawa, J. Zhuo, R.P. Gullapalli, R.A. Ord, J.L. Prince, and M. Stone, "Application of diffusion tensor imaging after glossectomy", Otolaryngology - Head and Neck Surgery, 143(2):304-306, August 2010. (PDF) (doi) (PubMed) (PMCID 2924629)
• H.K. Agarwal, J.L. Prince, and K.Z. Abd-Elmoniem, "Total removal of unwanted harmonic peaks (TruHARP) MRI for single breath-hold high-resolution myocardial motion and strain quantification", Magnetic Resonance in Medicine, 64(2):574-585, August 2010. (PDF) (doi) (PubMed)
• S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince, "Identification of Myocardial Infarction using Fractional Anisotropy of 3D Strain Tensors", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010. (PDF)
• H.K. Agarwal, S. van Elderen, M. Versluis, A. de Roos, A. Webb, J. Smink, and M. Stuber, "Navigator techniques for coronary MRA at 7 T", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. (PDF) (doi)
• S. Soleimanifard, K.Z. Abd-Elmoniem, H.K. Agarwal, M.S. Tomas, T. Sasano, E.J. Vonken, A. Youssef, M.R. Abraham, T.P. Abraham, and J.L. Prince, "Visualization of infarction using fractional anisotropy", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. (doi)
• M.S. Tomas, K.Z. Abd-Elmoniem, T. Sasano, E.J. Vonken, A. Youssef, M. Stuber, H.K. Agarwal, S. Soleimanifard, E. Marbán, J.L Prince, T.P. Abraham, and R. Abraham, "Regional evolution of mechanical dyssynchrony in a closed-chest porcine model of myocardial infarction as assessed by cardiac magnetic resonance", Society for Cardiovascular Magnetic Resonance (SCMR 2010), Phoenix, Arizona, January 21 - 24, 2010. (doi)
• A.X. Du, J.L. Cuzzocreo, B.A. Landman, D.S. Zee, J.L. Prince, and S.H. Ying, "Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration", Journal of Neurology, 257(8):1406-1408, August 2010. (PDF) (doi) (PubMed) (PMCID 2963035)
• B.A. Landman, K. Covington, E.S. McCreedy, M. Chen, A. Carass, N. Aucoin, J.L. Prince, and D.L.Pham, "JIST: An Open-Source, Java-Based Integrative Framework for Biomedical Image Analysis", NCI's NCRI, Washington D.C., June 21-22, 2010.
• M. Thambisetty, J. Wan, A. Carass, Y. An, J.L. Prince, and S.M. Resnick, "Longitudinal changes in cortical thickness associated with normal aging", NeuroImage, 52(4):1215-1223, October 2010. (PDF) (doi) (PubMed) (PMCID 2910226)
• K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, "Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities", Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010. (doi) (PubMed) (PMCID 2998761)
• N.Shiee, P.-L. Bazin, J. Bogovic, M. Chen, P.A. Calabresi, D.S. Reich, J.L. Prince, and D.L. Pham, "Cortical thinning in Multiple Sclerosis", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• N.Shiee, P.-L. Bazin, P.A. Calabresi, D.L. Pham, and D.S. Reich, "Brain sub-structure atrophy in Multiple Sclerosis measured by automated tissue-lesion segmentation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• J.A. Bogovic, J.A. Barger, M. Thomson, X. Fan, J.L. Prince, and S.H. Ying, "Shape Variation of the Thalamic Nuclei Estimated from a Manual Parcellation", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Multi-Channel Enhancement of the Adaptive Bases Algorithm", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• M. Chen, A. Carass, M.B. Wheeler, X. Liu, and J.L. Prince, "Implementation of the Adaptive Bases Algorithm in the Java Image Science Toolkit", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• C. Zhao, A. Carass, M. Chen, J. Bogovic, D. Chen, and J.L. Prince, "A Protocol for Manual Correction of Gyral Based Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• C. Zhao, D. Chen, A. Carass, M. Chen, J. Bogovic, and J.L. Prince, "A Java Application for Manually Editing Cortical Labels", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• J. Vogelstein, J. Bogovic, A. Carass, W. Gray, J.L. Prince, B. Landman, D. Pham, L. Ferrucci, S. Resnick, C. Priebe, and R.J. Vogelstein, "Graph-Theoretical Methods for Statistical Inference on MR Connectome Data", 16th Annual Meeting of the Organization for Human Brain Mapping (HBM 2010), Barcelona, Spain, June 6-10, 2010.
• J.A. Bogovic, M. Chen, A. Carass, P.-L. Bazin, D.L. Pham, S. Resnick, J.L. Prince, and B.A. Landman, "Multi-Modal Structural Networks: Mapping of Connectivity through Diffusion, Functional, and Structural Assessment of Intervening Pathways", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
• S. Roy, A. Carass, N. Shiee, D.L. Pham, S. Resnick, and J.L. Prince, "Longitudinal Changes of White Matter Lesions", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
• S. Roy, A. Carass, N. Shiee, D.L. Pham, and J.L. Prince, "MR Contrast Synthesis for Lesion Segmentation", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (doi) (PubMed) (PMCID 2995277)
• A. Ozturk, S.A. Smith, E.M. Gordon-Lipkin, D.M. Harrison, N. Shiee, D.L. Pham, B.S. Caffo, P.A. Calabresi, and D.S. Reich, "MRI of the Corpus Callosum in Multiple Sclerosis: Association with disability", Multiple Sclerosis, 16(2):166-77, 2010. (doi) (PubMed) (PMCID 2820126)
• J.N. Ratchford, S. Farrell, N. Shiee, C. Warner, S.B. Syc, S. Newsome, D. Harrison, E.M. Frohman, L.J. Balcer, D. Pham, D.S. Reich, and P.A. Calabresi, "Retinal nerve fiber layer thickness correlates with gray and white matter volume in MS", Annual Meeting of the American Academy of Neurology (AAN 2010), Toronto, Canada, April 10-17, 2010.
• B.C. Lucas, J.A. Bogovic, A. Carass, P.-L. Bazin, J.L. Prince, D.L. Pham, and B.A. Landman, "The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software", Neuroinformatics, 8:5-17, March 2010. (doi) (PubMed) (PMCID 2860951)
• J.A. Bogovic, B.A. Landman, P.-L. Bazin, and J.L. Prince, "Statistical Recombination of Rater Labels on Surfaces", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (doi) (PubMed) (PMCID 2997739)
• S. Roy, A. Carass, and J.L. Prince, "Synthesizing MR contrast and resolution through a patch matching technique", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi) (PubMed) (PMCID 2860803)
• X. Fan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "A novel contrast for DTI visualization for thalamus delineation", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi)
• B.A. Landmann, H. Wan, J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi) (PubMed) (PMCID 2854412)
• N. Shiee, P.-L. Bazin, A. Ozturk, D.S. Reich, P.A. Calabresi, and D.L. Pham, "A Topology-Preserving Approach to the Segmentation of Brain Images with Multiple Sclerosis Lesions", NeuroImage, 49(2):1524-1535, January 2010. (doi) (PubMed) (PMCID 2806481)
• J.A. Bogovic, P.-L. Bazin, and J.L. Prince, "Topology-Preserving STAPLE", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2010), San Francisco, California, June 14, 2010. (PDF) (doi)
• B.A. Landman, J.A. Bogovic, and J.L. Prince, "Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi) (PubMed) (PMCID 2917119)
• L.M. Ellingsen, G. Chintalapani, R.H. Taylor, and J.L. Prince, "Robust deformable image registration using prior shape information for atlas to patient registration", Comput. Med. Imaging Graph, 34(1):79-90, January 2010. (PDF) (doi) (PubMed)
• J. Bian, J.H Siewerdsen, X. Han, E.Y. Sidky, J.L. Prince, C.A. Pelizzari, and X. Pan, "Evaluation of sparse-view reconstruction from flat-panel-detector cone-beam CT", Physics in Medicine and Biology, 2010. (PDF) (doi) (PubMed)
• E. Dehghan, J. Lee, M. Moradi, X. Wen, G. Fichtinger, and S.E. Salcudean, "Prostate brachytherapy seed localization using C-arm rotation measurement and motion compensation", 13^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2010), Beijing, China, September 20-24, 2010. (PubMed)
• G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen, "Task-based analysis of detectability in tomosynthesis and cone-beam CT: validation of Fourier metrics in comparison to real observers", The 52nd Annual Meeting of the American Association of Physicists in Medicine, Philadelphia, PA, July 18-22, 2010. (doi)
• G.J. Gang, D.J. Tward, J. Lee, and J.H. Siewerdsen, "Anatomical background and the generalized detectability index for tomosynthesis and cone-beam CT", Medical Physics, 37(5):1948-1965, May 2010. (doi) (PubMed) (PMCID 2862054)
• N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince, "Seed localization in MRI-guided prostate brachytherapy using inversion-recovery with on-resonant water suppression (IRON)", 18th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2010), Stockholm, Sweden, May 1-7, 2010.
• N. Kuo, J. Lee, C. Tempany, M. Stuber, and J.L. Prince, "MRI-based prostate brachytherapy seed localization", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (doi)
• M.S. Ayad, J. Lee, A. Deguet, E.C. Burdette, and J.L. Prince, "C-arm pose estimation using a set of coplanar ellipses in correspondence", Seventh IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, April 14 - 17, 2010. (PDF) (doi) (PubMed) (PMCID 2904530)
• J. Lee, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "Optimal reconstruction method for intraoperative seed localization using fluoroscopy in prostate brachytherapy", American Brachytherapy Society Annual meeting, Atlanta, Georgia, Apr-May. 2010.
• N. Kuo, J. Lee, A. Deguet, D.Y. Song, E.C. Burdette, and J.L. Prince, "Automatic Segmentation of Seeds and Fluoroscope Tracking (FTRAC) Fiducial in Prostate Brachytherapy X-ray Images", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi)
• G.J. Gang, J. Lee, J.W. Stayman, D. Tward, W. Zbijewski, J.L. Prince, and J. Siewerdsen, "The generalized NEQ and detectability index for tomosynthesis and cone-beam CT: from cascaded systems analysis to human observers", Proceedings of SPIE Medical Imaging (SPIE-MI 2010), San Diego, CA, February 16-21, 2010. (PDF) (doi)

2009

• H.K. Agarwal, K.Z. Abd-Elmoniem, and J.L. Prince, "TruHARP: single breath-hold MRI for high resolution cardiac motion and strain quantification", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009. (doi) (PubMed) (PMCID 2886723)
• X. Liu, K.Z. Abd-Elmoniem, and J.L. Prince, "Incompressible Cardiac Motion Estimation of the Left Ventricle Using Tagged MR Images", 12^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009), London, UK, September 20-24, 2009. (doi)
• X. Liu, Y. Bai, and J.L. Prince, "Shortest Path Refinement For HARP Motion Tracking", Proceedings of SPIE Medical Imaging (SPIE-MI 2009), Orlando, FL, February, 2009. (doi) (PubMed) (PMCID 2782918)
• X. Liu, J. Zhuo, H.K. Agarwal, K.Z. Abd-Elmoniem, E. Murano, M. Stone, R. Gullapalli, and J.L. Prince, "Quantification of Three Dimensional Tongue Motion During Speech Using zHARP", Proceedings of SPIE Medical Imaging (SPIE-MI 2009), Orlando, FL, February, 2009. (doi)
• S. Sampath, N.F. Osman, and J.L. Prince, "A combined harmonic phase and strain-encoded pulse sequence for measuring three-dimensional strain", Magnetic Resonance Imaging, 27(1):55-61, January 2009. (doi) (PubMed) (PMCID 2599804)
• S.H. Ying, B.A. Landman, S. Chowdhury, A.H. Sinofsky, A. Gambini, S. Mori, D.S. Zee, and J.L. Prince, "Orthogonal diffusion-weighted MRI measures distinguish region-specific degeneration in cerebellar ataxia subtypes", J. Neurol., 256(11):1939-1942, November 2009. (doi) (PubMed) (PMCID 2789274)
• P.-L. Bazin, J.A. Bogovic, D.S. Reich, J.L. Prince, and D.L. Pham, "Belief Propagation Based Segmentation of White Matter Tracts in DTI", 12^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009), London, UK, September 20-24, 2009. (doi) (PubMed)
• B.A. Landman, P.-L. Bazin, S.A. Smith, and J.L. Prince, "Robust Estimation of Spatially Variable Noise Fields", Magnetic Resonance in Medicine, 62(2):500-509, August 2009. (doi) (PubMed) (PMCID 2806192)
• B.A. Landman, P.-L. Bazin, and J.L. Prince, "Estimation and Application of Spatially Variable Noise Fields in Diffusion Tensor Imaging", Journal of Magnetic Resonance Imaging, 27(6):741-751, July 2009. (doi) (PubMed) (PMCID 2733233)
• N. Shiee, P.-L. Bazin, D.S. Reich, and D.L. Pham, "Automated Cortical Reconstruction of Brains with Multiple Sclerosis", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009. (doi)
• S. Roy, A. Carass, P.-L. Bazin, and J.L. Prince, "A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009. (doi) (PubMed) (PMCID 2814436)
• B.A. Landman, J.C. Hoyt, E.J. Sax, and K.P. Smith, "NeuroWeb Database: A Laboratory Management System for Neuroimaging Coordination, Collaboration and Analysis", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
• N. Shiee, P.-L. Bazin, and D.L. Pham, "An Automated Pipeline for Cortical Reconstruction of Brains with MS", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
• J. Bogovic, R. Nicoletto, B. Landman, J.L. Prince, and S. Ying, "Probabilistic Atlas of Cerebellar Degeneration Reflects Volume and Shape Changes", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
• B.A. Landman, B.C. Lucas, J.A. Bogovic, A. Carass, and J.L. Prince, "A Rapid Prototyping Environment for NeuroImaging in Java", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
• J. Wan, A. Carass, P.-L. Bazin, S.H. Ying, and J.L. Prince, "Automated Cerebellum Extraction From Whole Head 3D MR Images", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
• M.E. Richardson, D. Crocetti, J. Wan, D.L. Pham, J.L. Prince, K. Subramaniam, B. Fischl, W.E. Kaufmann, and S.H. Mostofsky, "Automated MRI Parcellation of the Frontal Lobe", 15th Annual Meeting of the Organization for Human Brain Mapping (HBM 2009), San Francisco, California, June 18-23, 2009. (doi)
• B.A. Landman, "CATNAP and JIST: DTI Processing Made Ridiculously Simple", 17th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2009), Honolulu, Hawaii, April 18-24, 2009.
• B.A. Landman, J. Bogovic, and J.L Prince, "Efficient Anatomical Labeling by Statistical Recombination of Partially Label Datasets", 17th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2009), Honolulu, Hawaii, April 18-24, 2009.
• B.A. Landman, J.A.D. Farrell, and P.C.M. van Zijl, "Optimal An Open Source Monte Carlo Framework for Simulating Diffusion in Biologically Relevant Geometries including Broken, Crimped and Bulging Axons", 17th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2009), Honolulu, Hawaii, April 18-24, 2009.
• K.R. Rocha, G. Sundaramoorthi, A.J. Yezzi, and J.L. Prince, "3D Topology Preserving Flows for Viewpoint-Based Cortical Unfolding", Int. J. Comput. Vis., 85(3):223-236, December 2009. (doi) (PubMed) (PMCID 2786089)
• L.M. Ellingsen and J.L. Prince, "Mjolnir:Extending HAMMER Using a Diffusion Transformation Model and Histogram Equalization for Deformable Image Registration", Int. J. Biomed. Imaging, 2009:281615, August 2009. (doi) (PubMed) (PMCID 2724857)
• X. Han, C. Xu, and J.L. Prince, "A Moving Grid Framework for Geometric Deformable Models", International Journal of Computer Vision, 84(1):63-79, August 2009. (doi) (PubMed) (PMCID 2784682)
• Y. Bai, X. Han, and J.L. Prince, "Digital Topology on Adaptive Octree Grids", J. Math Imaging Vis., 34(2):165-184, June 2009. (doi) (PubMed) (PMCID 2805029)
• J. Lee, C. Labat, A.K. Jain, D.Y. Song, E.C. Burdette, G. Fichtinger, and J.L. Prince, "Optimal Matching for Prostate Brachytherapy Seed Localization with Dimension Reduction", 12^th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009), London, UK, September 20-24, 2009. (PDF) (doi)
• J. Lee, C. Labat, A.K. Jain, G. Fichtinger, and J.L. Prince, "Reduced-Dimensionality Matching for 3-D Reconstruction of Prostate Brachytherapy Implants from Incomplete Data", Sixth IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, Massachusetts, June 28 - July 1, 2009. (PDF) (doi)
• J. Lee, X. Liu, A.K. Jain, D.Y. Song, E.C. Burdette, J.L. Prince, and G. Fichtinger, "Prostate Brachytherapy Seed Reconstruction with Gaussian Blurring and Optimal Coverage Cost", IEEE Trans. on Medical Imaging, 28(12):1955-1968, December 2009. (PDF) (doi) (PubMed)
• E.M. Boctor, N. Deshmukh, M.S. Ayad, C. Clarke, K. Dickie, M.A. Choti, and E.C. Burdette, "Three-dimensional heat-induced echo-strain imaging for monitoring high-intensity acoustic ablation", Proceedings of SPIE Medical Imaging (SPIE-MI 2009), Orlando, FL, February, 2009. (doi)
• M.S. Ayad, J. Lee, J.L. Prince, and G. Fichtinger, "Prostate Brachytherapy Seed Localization Using a Mobile C-arm Without Tracking", Proceedings of SPIE Medical Imaging (SPIE-MI 2009), Orlando, FL, February, 2009. (doi) (PubMed) (PMCID 2801145)
• O. Sadowsky, J. Lee, J.L. Prince, and R.H. Taylor, "Enhancement of Mobile C-arm Cone-Beam Reconstruction Using Prior Anatomical Models", Proceedings of SPIE Medical Imaging (SPIE-MI 2009), Orlando, FL, February, 2009. (PDF) (doi)

2008

• H.K. Agarwal, K.Z. Abd-Elmoniem, M. Schär, S. Kelle, J.L. Prince, and M. Stuber, "Coronary magnetic resonance angiography using non spatially selective navigator excitations at 3T", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
• K.Z. Abd-Elmoniem, M. Stuber, and J.L. Prince, "Direct Three-Dimensional Myocardial Strain Tensor Quantification and Tracking using zHARP", Medical Image Analysis, 12(6):778-786, December 2008. (doi) (PubMed) (PMCID 2590624)
• D. Tosun and J.L. Prince, "A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces", IEEE Trans. on Medical Imaging, 27(12):1739-1753, December 2008. (doi) (PubMed) (PMCID 2597639)
• N. Shiee, P.-L. Bazin, J.L. Cuzzocreo, D.S. Reich, P.A. Calabresi, and D.L. Pham, "Multiple Sclerosis Lesion Segmentation Using Statistical and Topological Atlases", 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), New York, NY, September 6-10, 2008.
• B.A. Landman, P.-L. Bazin, and J.L. Prince, "Tensor Interpolation by Concise Local Estimation of Anisotropy and Rotation", 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), New York, NY, September 6-10, 2008.
• B.A. Landman, J. Bogovic, and J.L. Prince, "Compressed Sensing of Multiple Intra-Voxel Orientations with Traditional DTI", 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), New York, NY, September 6-10, 2008.
• B.A. Landman, J. Farrell, H. Huang, J.L. Prince, and S. Mori, "Diffusion Tensor Imaging at Low SNR:Non-monotonic behaviors of tensor contrasts", Magnetic Resonance Imaging, 26(6):790-800, July 2008. (doi) (PubMed) (PMCID 2583784)
• A. Ozturk, A.D. Sasson, J.A.D. Farrell, B.A. Landman, A.C.B.S. da Motta, A. Aralasmak, and D.M. Yousem, "Regional Differences in Diffusion Tensor Imaging Measurements: Assessment of Intra-Rater and Inter-Rater Variability", American Journal of Neuroradiology, 29:1124-1127, June 2008.
• B. Lucas, B. Landman, J.L. Prince, and D. Pham, "MAPS: A Free Medical Image Processing Pipeline", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
• J. Wan, A. Carass, S.M. Resnick, and J.L. Prince, "Characterizing Regional Gray Matter Thickness Trends in Normal Aging", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
• J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince, "DTI Fiber Tractography Reveals Precentral-Postcentral Gyral Connectivity", 14th Annual Meeting of the Organization for Human Brain Mapping (HBM 2008), Melbourne, Australia, June 15-19, 2008.
• B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince., "Robust Maximum Likelihood Estimation in Q-space MRI", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi)
• J. Wan, A. Carass, S.M. Resnick, and J.L. Prince, "Automated Reliable Labeling of the Cortical Surface", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi)
• J. Bogovic, A. Carass, J. Wan, B. Landman, and J.L. Prince, "Automatically identifying white matter tracts using cortical labels", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi) (PubMed) (PMCID 2812932)
• S. Roy, H. Agarwal, A. Carass, Y. Bai, D.L. Pham, and J.L. Prince, "Fuzzy C-Means with Variable Compactness", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (doi) (PubMed) (PMCID 2814437)
• B.A. Landman, P.-L. Bazin, and J.L. Prince, "Robust DTI Noise Level Estimation Improves RESTORE Tensor Estimation", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
• B.A. Landman, P.-L. Bazin, and J.L. Prince, "Robust Diffusion Tensor Estimation by Maximizing Rician Likelihood", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
• B.A. Landman, J.A.D. Farrell, S.A. Smith, P.C.M. van Zijl, and J.L. Prince, "Q-Space Diffusion Weighted MRI Analyzed with Maximizing Rician Likelihood Improves Reliability and Tissue Contrast", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
• B.A. Landman, J.A.D. Farrell, S.A. Smith, P.A. Calabresi, P.C.M. van Zijl, and J.L. Prince, "Exploring the Information Content of q-Space Diffusion Weighted Imaging: Application to Multiple Sclerosis (MS) Spinal Cord Lesions", 16th Annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2008), Toronto, Canada, May 3-9, 2008.
• X. Fan, P.-L. Bazin, J. Bogovic, Y. Bai, and J.L. Prince, "A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), Anchorage, Alaska, June 24-26, 2008. (doi)
• X. Fan, P.-L. Bazin, and J.L. Prince, "A Multi-Compartment Segmentation Framework With Homeomorphic Level Sets", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), Anchorage, Alaska, June 24-26, 2008. (doi) (PubMed)
• J. Lee, X. Liu, J.L. Prince, and G. Fichtinger, "Prostate Brachytherapy Seed Localization with Gaussian Blurring and Camera Self-Calibration", 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), New York, NY, September 6-10, 2008. (PDF) (doi) (PubMed)
• G. Chintalapani, A.K. Jain, D.H. Burkhardt, J.L. Prince, and G. Fichtinger, "CTREC: C-arm tracking and reconstruction using elliptic curves", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), Anchorage, Alaska, June 24-26, 2008. (PDF) (doi)
• J. Lee, X. Liu, A.K. Jain, J.L. Prince, and G. Fichtinger, "Tomosynthesis-based Radioactive Seed Localization in Prostate Brachytherapy Using Modified Distance Map Images", Fifth IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, May 14-17, 2008. (PDF) (doi) (PubMed)

2007

• K.Z. Abd-Elmoniem, S. Sampath, N.F. Osman, and J.L. Prince, "Real-Time Monitoring of Cardiac Regional Function Using FastHARP MRI and Region-of-Interest Reconstruction", IEEE Trans. on Biomedical Engineering, 54(9):1650-1656, September 2007. (doi) (PubMed)
• K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber, "Three-Dimensional Magnetic Resonance Myocardial Motion Tracking From a Single Image Plane", Magnetic Resonance in Medicine, 58(1):92-102, July 2007. (doi) (PubMed)
• K.Z. Abd-Elmoniem, M. Stuber, and J.L. Prince, "Multi-slice Three-Dimensional Myocardial Strain Tensor Quantification Using zHARP", 20^th Conference on Information Processing in Medical Imaging (IPMI 2007), Kerkrade, The Netherlands, July 2-6, 2007. (doi)
• H.K. Agarwal and J.L. Prince, "Fast Imaging of Dynamic Objects Using POCS Partial Fourier Reconstruction", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• A. El-Sharkawy, K.Z. Abd-Elmoniem, J.L. Prince, and P. Bottomley, "Simultaneous Temperature and Motion Tracking Using HARP MRI [T-HARP]", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• K.Z. Abd-Elmoniem, M. Stuber, N.F. Osman, and J.L. Prince, "Optimal z-Encoding Frequency for zHARP: In-vivo Validation and Comparison with SF-CSPAMM", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• K.Z. Abd-Elmoniem, M. Stuber, N.F. Osman, and J.L. Prince, "Accelerated Three-Dimensional Myocardial Strain Quantification using zHARP", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• K.Z. Abd-Elmoniem and J.L. Prince, "Total Removal of Unwanted Echoes in Harmonic Phase MRI (TRUE-HARP)", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• X. Liu and J.L. Prince, "Fast and Robust HARP Tracking Using Region Growing", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• X. Liu, E. Murano, M. Stone, and J.L. Prince, "HARP tracking refinement using seeded region growing", Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. (doi)
• H.K. Agarwal, K.Z. Abd-Elmoniem, and J.L. Prince, "Fast Motion Imaging Using Reduced Field Of View Partial Fourier MRI", Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. (doi)
• H. Shinagawa, E.Z. Murano, J. Zhuo, R.P. Gullapalli, B. Landman, J.L. Prince, and M. Stone, "Human Tongue Myoarchitecture with Oral Appliance, Using Diffusion Tensor Imaging", International American and Canadian Associations for Dental Research, New Orleans, Louisiana, March 2007.
• K.Z. Abd-Elmoniem, J. Terrovitis, M.R. Abraham, J.L. Prince, M. Stuber, "Slice-Following CSPAMM Myocardial Tagging in Rats and on a Human High-Field System", Society for Cardiovascular Magnetic Resonance (SCMR 2007), Rome, Italy, February 2-4, 2007.
• K.Z. Abd-Elmoniem, M. Stuber, N. Osman, and J.L. Prince, "Toward Optimal Measure of 3-D Myocardium Displacements from a Single Slice Using zHARP: In-vivo Validation and Comparison with CSPAMM", Society for Cardiovascular Magnetic Resonance (SCMR 2007), Rome, Italy, February 2-4, 2007.
• B.A. Landman, P.-L. Bazin, and J.L. Prince., "Diffusion Tensor Estimation by Maximizing Rician Likelihood", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2007), Rio de Janeiro, Brazil, October 14-15, 2007.
• J.A. Farrell, B.A. Landman, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori, "Effects of SNR on the Accuracy and Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T", Journal of Magnetic Resonance Imaging, 26(3):756-767, August 2007. (PubMed)
• B.A. Landman, J.A. Farrell, C.K. Jones, S.A. Smith, J.L. Prince, P.C. van Zijl, and S. Mori, "Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T", NeuroImage, 36(4):1123-1138, July 2007.
• B.A. Landman, J.A.D. Farrell, N-L. Patel, S. Mori, and J.L. Prince, "DTI Fiber Tracking: The Importance of Adjusting DTI Gradient Tables for Motion Correction. CATNAP – A Tool to Simplify and Accelerate DTI Analysis", 13th Annual Meeting of the Organization for Human Brain Mapping (HBM 2007), Chicago, Illinois, June 10-14, 2007.
• B.A. Landman, A.X. Du, W.D. Mayes, J.L. Prince, and S.H. Ying, "Diffusion Tensor Imaging Enables Robust Mapping of the Deep Cerebellar Nuclei", 13th Annual Meeting of the Organization for Human Brain Mapping (HBM 2007), Chicago, Illinois, June 10-14, 2007.
• B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince, "Tradeoffs Between Tensor Orientation and Anisotropy in DTI: Impact of Diffusion Weighting Scheme", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• B.A. Landman, H. Huang, J.L. Prince, and S.H. Ying, "A Window for High-Resolution Post-Mortem DTI: Mapping Contrast Changes in Neural Degeneration", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• B.A. Landman, S. Mori, and J.L. Prince, "Systematic Evaluation of Linear and Nonlinear DTI Estimation Methods: An Open Framework", International Society for Magnetic Resonance in Medicine (ISMRM 2007), Berlin, Germany, May 19-25, 2007.
• A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett, and J.L. Prince, "A Joint Registration and Segmentation Approach to Skull Stripping", Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. (doi)
• P. Aksit, J.A. Derbyshire, and J.L. Prince, "Three-point method for fast and robust field mapping for EPI geometric distortion correction", Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. (doi)
• G. Chintalapani, L.M. Ellingsen, O. Sadowsky, J.L. Prince, and R.H. Taylor, "Statistical atlases of bone anatomy: construction, iterative improvement and validation", Tenth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2007), Brisbane, Australia, October 29 - November 2, 2007. (doi) (PubMed)
• P.-L. Bazin, L.M. Ellingsen, and D.L. Pham, "Digital homeomorphisms in deformable registration", 20^th Conference on Information Processing in Medical Imaging (IPMI 2007), Kerkrade, The Netherlands, July 2-6, 2007. (doi) (PubMed)
• X. Han, C. Xu, and J.L. Prince, "Fast numerical scheme for gradient vector flow computation using a multigrid method", IET Image Processing, 1(1):48-55, March 2007. (doi)
• K.R. Rocha, A.J. Yezzi, and J.L. Prince, "A Hybrid Eulerian–Lagrangian Approach for Thickness, Correspondence, and Gridding of Annular Tissues", IEEE Trans. on Image Processing, 16(3):636-648, March 2007. (doi)
• X. Liu, A.K. Jain, and G. Fichtinger, "Prostate Implant Reconstruction with Discrete Tomography", Tenth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2007), Brisbane, Australia, October 29 - November 2, 2007. (doi)
• C. Labat, A. Jain, G. Fichtinger, and J.L. Prince, "Toward Optimal Matching for 3D Reconstruction on Brachytherapy Seeds", Tenth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2007), Brisbane, Australia, October 29 - November 2, 2007. (PDF) (doi)

2006

• X. Liu, and M. Stone, and J.L. Prince, "Tracking tongue motion in three dimensions using tagged MR image", Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Arlington, VA, April 6-9, 2006. (doi)
• H.K. Agarwal and J.L. Prince, "Theoretical framework for analyzing MR imaging of dynamic objects using filters and downsamplers", Proceedings of SPIE Medical Imaging (SPIE-MI 2006), San Diego, CA, 2006. (doi)
• K. Z. Abd-Elmoniem, V. Parthasarathy, and J.L. Prince, "Artifact Reduction in HARP Strain Maps using Anisotropic Smoothing", Proceedings of SPIE Medical Imaging (SPIE-MI 2006), San Diego, CA, 2006. (doi)
• Y. Bai, X. Han, and J.L. Prince, "Octree-based Topology-preserving Isosurface Simplification", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2006), New York City, New York, June 17-18, 2006.
• B.A. Landman, S. Chowdhury, A.H. Sinofsky, A.S.K. Liu, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying, "Delineation of Cerebellar Fiber Tracts on Anatomically Aligned Planes with ViPAR, a Novel MRI Visualization and Manipulation Tool", 12th Annual Meeting of the Organization for Human Brain Mapping (HBM 2006), Florence, Italy, June 11-15, 2006.
• B.A. Landman, S. Chowdhury, A.H. Sinofsky, S. Mori, D.S. Zee, J.L. Prince, and S. H. Ying, "s-Image Representation of Diffusion Tensor Contrast and Fiber Geometry: Leukometric Analysis in the Brainstem and Cerebellum", 12th Annual Meeting of the Organization for Human Brain Mapping (HBM 2006), Florence, Italy, June 11-15, 2006.
• H. Huang, A. Carass, J.L. Prince, B. Landman, P.C.M. van Zijl, and S. Mori, "Cortico-cortical Connectivity Revealed by DTI-based Tractography", International Society for Magnetic Resonance in Medicine (ISMRM 2006), Seattle, Washington, May 16-12, 2007.
• B.A. Landman, J.A. Farrell, S. Mori, P.C. van Zijl, and J.L. Prince, "On the Coregistration of Diffusion Weighted Images", International Society for Magnetic Resonance in Medicine (ISMRM 2006), Seattle, Washington, May 16-12, 2007.
• B.A. Landman, J.A.D. Farrell, S. Mori, P.C.M. van Zijl, and J.L. Prince, "Optimal Partitioning of Diffusion Weighting Schemes", International Society for Magnetic Resonance in Medicine (ISMRM 2006), Seattle, Washington, May 16-12, 2007.
• P. Anbazhagan, A. Carass, P.-L. Bazin, and J.L. Prince, "Automatic Estimation of Mid Sagittal Plane and AC-PC alignment based on Nonrigid Registration", Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Arlington, VA, April 6-9, 2006. (doi)
• L. Ellingsen and J.L. Prince, "Mjolnir: Deformable image registration using feature diffusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2006), San Diego, CA, 2006. (doi)
• L.M. Ellingsen and J.L. Prince, "Deformable Registration of CT Pelvis Images Using Mjolnir", IEEE Nordic Signal Processing Symposium (NORSIG 2006), Reykjavik, Iceland, 7-9 June, 2006. (PDF) (doi)
• L.M. Ellingsen and J.L. Prince, "Mjolnir: Deformable Image Registration using Feature Diffusion", Proceedings of SPIE Medical Imaging (SPIE-MI 2006), San Diego, CA, 2006. (PDF)
• O. Sadowsky, K. Ramamurthi, L.M. Ellingsen, G. Chintalapani, J.L. Prince, and R.H. Taylor, "Atlas-assisted Tomography: Registration of a Deformable Atlas to Compensate for Limited-angle Cone-beam Trajectory", Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Arlington, VA, April 6-9, 2006. (PDF) (doi)

2005

• K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber, "zHARP:Simultaneous in-plane and through-plane displacement quantification. An algorithm for direct high-density 3-D cardiac displacement measurement", Proceedings of the SCMR, Eighth Annual Scientific Sessions, Abstract 554, January 2005.
• L. Pan, J.L. Prince, J.A.C. Lima, and N.F. Osman, "Fast tracking of cardiac motion using 3D-HARP", IEEE Trans. on Biomedical Engineering, 52(8):1425-1435, August 2005. (doi) (PubMed)
• K.Z. Abd-Elmoniem, N.F. Osman, M. Stuber, and J.L. Prince, "ZHARP: Three-Dimensional Motion Tracking From a Single Image Plane", 19^th Conference on Information Processing in Medical Imaging (IPMI 2005), Glenwood Springs, Colorado, July 11-15, 2005.
• K.Z. Abd-Elmoniem, N.F. Osman, J.L. Prince, and M. Stuber, "zHARP: Simultaneous in-plane and through-plane displacement quantification. An algorithm for direct high-density 3-D cardiac displacement measurement", Proceedings of the SCMR, Eighth Annual Scientific Sessions, Abstract 554, January 2005.
• Y. Bai, X. Han, D. Pham, and J.L. Prince, "Super-resolved multi-channel fuzzy segmentation of MR brain images", Proceedings of SPIE Medical Imaging (SPIE-MI 2005), San Diego, CA, February 16-21, 2005.
• X. Han, C. Xu, and J.L. Prince, "A 2D Moving Grid Geometric Deformable Model", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2003), Madison, Wisconsin, June 16-22, 2003. (doi)
• A. Yezzi and J.L. Prince, "An Eulerian PDE approach for computing tissue thickness", IEEE Trans. on Medical Imaging, 22(10):1332–1339, October 2003. (doi) (PubMed)
• O. Sadowsky, K. Ramamurthi, J.L. Prince, and R.H. Taylor, "Using anatomical models and fast rendering algorithms for C-arm pose recovery and cone-beam tomographic reconstruction of bone anatomy", 5th Annual Meeting of the International Society, for Computer Assisted Orthopaedic Surgery, Helsinki, Finland, June 19-22, 2005.

2004

• N.F. Osman and J.L. Prince, "Regenerating MR tagged images using harmonic phase (HARP) methods", IEEE Trans. on Biomedical Engineering, 51(8):1428-1433, August 2004. (doi)
• L. Pan, J.L. Prince, J.A.C. Lima, and N.F. Osman, "Validation of 3D-HARmonic Phase (3D-HARP) for Cardiac Motion Estimation", International Society for Magnetic Resonance in Medicine (ISMRM 2004), Kyoto, Japan, May 15-21, 2004.
• V. Parthasarathy and J.L. Prince, "Artifact Reduction in HARP Strain Maps", International Society for Magnetic Resonance in Medicine (ISMRM 2004), Kyoto, Japan, May 15-21, 2004.
• S. Sampath and J.L. Prince, "3D Tracking of Cardiac Material Points Using a Combined Slice-Following Harmonic Phase (SF-HARP) Magnetic Resonance Imaging Approach", International Society for Magnetic Resonance in Medicine (ISMRM 2004), Kyoto, Japan, May 15-21, 2004.
• V. Parthasarathy, M. Ness-Aiver, and J.L. Prince, "Dynamic range of harmonic phase magnetic resonance imaging (HARP-MRI)", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004.
• S. Sampath and J.L. Prince, "Imaging the Evolution of Three-dimensional myocardial strains using a Fast MR Imaging Technique", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004.
• D. Tosun, M.E. Rettmann, D.Q. Naiman, S.M. Resnick, M.A. Kraut, and J.L. Prince, "Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study", Seventh International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2004), Saint-Malo, France, September 26-30, 2004.
• X. Han, D.L. Pham, D. Tosun, M.E. Rettmann, C. Xu, and J.L. Prince, "CRUISE: Cortical Reconstruction Using Implicit Surface Evolution", NeuroImage, 23(3):997-1012, 2004. (doi)
• D. Pham and J.L. Prince, "Robust Unsupervised Tissue Classification in MR Images", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004. (doi)
• X. Tao, J.L. Prince, and C. Davatzikos, "An Automated Method for Finding Curves of Sulcal Fundi on the Human Cortical Surface", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004. (doi)
• Y. Bai, X. Han, and J.L. Prince, "Super-resolution Reconstruction of MR Brain Images", Conference on Information Sciences and Systems (CISS 2004), Princeton, New Jersey, March 17-19, 2004.
• D. Tosun, M.E. Rettmann, X. Han, X. Tao, C. Xu, S.M. Resnick, D. Pham, and J.L. Prince, "Cortical Surface Segmentation and Mapping", NeuroImage, 23:S108-S118, 2004. (doi) (PubMed)
• D. Tosun and J.L. Prince, "Mapping Techniques for Aligning Sulci Across Multiple Brains", Medical Image Analysis, 8:295-309, 2004. (doi)
• K. Ramamurthi, J.L. Prince, and N. Strobel, "Exact 3D cone-beam reconstruction from projections obtained over a Wobble trajectory on a C-arm", Second IEEE International Symposium on Biomedical Imaging (ISBI 2004), Arlington, VA, April 15-18, 2004. (PDF) (doi)

2003

• K.Z. Abd-Elmoniem and J.L. Prince, "Algorithms for Real-Time FastHARP Cardiac Function Analysis", Sixth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2003), Montréal, Québec, Canada, November 16-18, 2003.
• N.F. Osman, S. Sampath, J.A. Derbyshire, M. Stuber, D. Kraitchman, and J.L. Prince, "Quantitative Imaging of Myocardial Function with No Breath-holding Using Fast Strain-Encoded (SENC)", International Society for Magnetic Resonance in Medicine (ISMRM 2003), Toronto, Canada, July 10-16, 2003.
• N.F. Osman, J. Garot, B. Gerber, K. Wu, D. Kraitchman, J.A.C. Lima, and J.L. Prince, "Strain Encoded (SENC) Imaging Detects Regional Dysfunction in the Heart without Image Processing", International Society for Magnetic Resonance in Medicine (ISMRM 2003), Toronto, Canada, July 10-16, 2003.
• K.Z. Abd-Elmoniem, S. Sampath, N.F. Osman, and J.L. Prince, "Tool for Automatic Real-Time Regional Cardiac Function Analysis using HARP", Proceedings of SPIE Medical Imaging (SPIE-MI 2003), San Diego, CA, February 15-20, 2003.
• S. Sampath, J.A. Derbyshire, N.F. Osman, and J.L. Prince, "Real-time imaging of cardiac strain using FastHARP: a comparison between breath-hold and non-breath-hold studies", Society for Cardiovascular Magnetic Resonance (SCMR 2003), Orlando, Florida, February 7-9, 2003.
• D. Tosun, M.E. Rettmann, and J.L. Prince, "Mapping Techniques for Aligning Sulci Across Multiple Brains", Sixth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2003), Montréal, Québec, Canada, November 16-18, 2003.
• X. Han, C. Xu, and J.L. Prince, "A topology preserving level set method for geometric deformable models", IEEE Trans. on Pattern Analysis Machine Intelligence, 25(6):755-768, June 2003. (doi)
• X. Han, C. Xu, and J.L. Prince, "Topology-Preserving Geometric Deformable Models and Brain Reconstruction", Geometric Level Set Methods in Imaging, Vision, and Graphics, Edited by Stanley Osher and Nikos Paragios, Springer-Verlag, 2003. (doi)
• K.J. Behnke, M.E. Rettmann, D.L. Pham, D. Shen, S.M. Resnick, C. Davatzikos, and J.L. Prince, "Automatic classification of sulcal regions of the human brain cortex using pattern recognition", Proceedings of SPIE Medical Imaging (SPIE-MI 2003), San Diego, CA, February 15-20, 2003. (doi)
• X. Han, C. Xu, and J.L. Prince, "A 2D Moving Grid Geometric Deformable Model", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2003), Madison, Wisconsin, June 16-22, 2003. (doi)
• A. Yezzi and J.L. Prince, "An Eulerian PDE approach for computing tissue thickness", IEEE Trans. on Medical Imaging, 22(10):1332–1339, October 2003. (doi) (PubMed)
• K. Ramamurthi and J.L. Prince, "Region of interest cone beam tomography with prior CT data", Conference Record of the Thirty-Seventh Asilomar Conference on Signals, Systems and Computers, Pacific Grove, CA, 2:1924-1927, November 9-12 2003. (PDF) (doi)

2002

• S. Sampath, V. Parthasarathy, and J.L. Prince, "A phantom validation of the FastHARP pulse sequence", First IEEE International Symposium on Biomedical Imaging (ISBI 2002), Arlington, VA, July 7-10, 2002. (doi)
• X. Tao, J.L. Prince, and C. Davatzikos, "Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain", IEEE Trans. on Medical Imaging, 21(5):513-524, May 2002. (doi) (PubMed)
• X. Han, C. Xu, U. Braga-Neto, and J.L. Prince, "Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm", IEEE Trans. on Medical Imaging, 21(2):109-121, February 2002. (doi) (PubMed)
• M.E. Rettmann, X. Tao, and J.L. Prince, "Assisted labeling techniques for the human brain cortex", Proceedings of SPIE Medical Imaging (SPIE-MI 2002), San Diego, CA, February 23-28, 2002. (doi)
• D.L. Pham, X. Han, M.E. Rettmann, C. Xu, D. Tosun, S.M. Resnick, and J.L. Prince, "New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm", Proceedings of SPIE Medical Imaging (SPIE-MI 2002), San Diego, CA, February 23-28, 2002. (doi)
• W.S. Kerwin and J.L. Prince, "Kriging Filters for Space Time Interpolation", Advances in Imaging and Electron Physics, 124:139-193, November 2002.
• M. NessAiver and J.L. Prince, "Magnitude Image CSPAMM Reconstruction (MICSR) Improves Tag Contrast and Persistence", ESMRMB, Cannes, France, August 22-25 2002. (doi) (PubMed)
• J.M. Links and J.L. Prince, "Restoration of Multi-collimator/Multi-head SPECT Data Via the Vector Wiener Filter", SNM 49th Annual Mtg., Los Angeles, California, June 16, 2002.
• A. Yezzi and J.L. Prince, "A PDE Approach for Thickness, Correspondence, and Gridding of Annular Tissues", Proc. Europ. Conf. Comput. Vis. (ECCV), Copenhagen, Denmark, May 2002.

2001

• D.L. Kraitchman, S. Sampath, J.A. Derbyshire, D.A. Bluemke, B.L. Gerber, J.L. Prince, and N.F. Osman, "Quantitative ischemia detection during cardiac MR stress testing", 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EBMS 2001), Istanbul, Turkey, October 25-28, 2001.
• X. Han, C. Xu, and J.L. Prince, "A Topology Preserving Deformable Model Using Level Sets", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), Kauai, Hawaii, December 8-14, 2001. (doi)
• X. Han, C. Xu, D. Tosun, and J.L. Prince, "Cortical Surface Reconstruction Using a Topology Preserving Geometric Deformable Model", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2001), Kauai, Hawaii, December 9-10, 2001. (doi)
• M.E. Rettmann, X. Han, and J.L. Prince, "Automated Parcellation of the Cortical Surface for Computation of Regional Gyrification Indices", Seventh International Conference on Functional Mapping of the Human Brain (HBM 2001), Brighton, U.K., June 10-14, 2001.
• D. Tosun, M.E. Rettmann, X. Tao, X. Han, C. Xu, and J.L. Prince, "Calculation of Human Cerebral Cortical Thickness on Opposing Sulcal Banks", Seventh International Conference on Functional Mapping of the Human Brain (HBM 2001), Brighton, U.K., June 10-14, 2001.
• X. Tao, X. Han, M.E. Rettmann, J.L. Prince, and C. Davatzikos, "Statistical Study on Cortical Sulci of Human Brains", 17th Conference on Information Processing in Medical Imaging (IPMI 2001), Davis, California, June 18-22, 2001.
• X. Han, C. Xu, M.E. Rettmann, and J.L. Prince, "Automatic Segmentation Editing for Cortical Surface Reconstruction", Proceedings of SPIE Medical Imaging (SPIE-MI 2001), San Diego, CA, February, 2001.
• D. Tosun and J.L. Prince, "A Hemispherical Map for the Human Brain Cortex", Proceedings of SPIE Medical Imaging (SPIE-MI 2001), San Diego, CA, February, 2001.
• A. Yezzi and J.L. Prince, "A PDE Approach for Measuring Tissue Thickness", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), Kauai, Hawaii, December 8-14, 2001. (doi)
• D.L. Pham, "Spatial Models for Fuzzy Clustering", Computer Vision and Image Understanding, 84(2):285-297, 2001. (doi)
• C. Xu, A. Yezzi, Jr., and J.L. Prince, "A Summary of Geometric Level-Set Analogues for a General Class of Parametric Active Contour and Surface Models", Proc. of 2001 IEEE Workshop on Variational and Level Set Methods in Computer Vision (VLSM 2001), 104-111, July 2001. (doi)

2000

• N.F. Osman and J.L. Prince, "Visualizing myocardial function using HARP MRI", Physics in Medicine and Biology, 45(6):1665-1682, June 2000. (doi) (PubMed)
• N.F. Osman, E.R. McVeigh, and J.L. Prince, "Imaging heart motion using harmonic phase MRI", IEEE Trans. on Medical Imaging, 19(3):186-202, March 2000. (doi) (PubMed)
• M.E. Rettmann, X. Han, and J.L. Prince, "Watersheds on the Cortical Surface for Automated Sulcal Segmentation", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2000), Hilton Head Island, South Carolina, June 11-12, 2000. (doi)
• M.E. Rettmann, X. Han, D.L. Pham, and J.L. Prince, "Geodesics for Sulcal Segmentation and Depth Measurements", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
• D. Yu, C. Xu, and J.L. Prince, "A New Surface Editing Tool for Generating Truth Models of the Human Cortical Surface", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
• C. Xu, X. Han, and J.L. Prince, "Improving Cortical Surface Reconstruction Accuracy Using an Anatomically Consistent Gray Matter Representation", Sixth International Conference on Functional Mapping of the Human Brain (HBM 2000), San Antonio, Texas, June 2000.
• X. Han, M.E. Rettmann, C. Xu, and J.L. Prince, "Morphology on Triangle Meshes Using Geodesic Distance", Conference on Information Sciences and Systems (CISS 2000), Princeton, New Jersey, March 15-17, 2000.
• D.N. Yu, C. Xu, M.E. Rettmann, D.L. Pham, and J.L. Prince, "Quantitative Validation of a Deformable Cortical Surface Model", Proceedings of SPIE Medical Imaging (SPIE-MI 2000), San Diego, CA, February, 2000. (doi)
• D. Yu, "Quantitative Validation of a Cortical Surface Reconstruction Method", MSE thesis, The Johns Hopkins University, January, 2000.
• N.F. Osman and J.L. Prince, "On the design of the bandpass filters in harmonic phase MRI", IEEE International Conference on Image Processing (ICIP 2000), Vancouver, Canada , September 10-13, 2000. (doi)
• W.S. Kerwin and J.L. Prince, "On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs", Automatica, 36(9):1381-1383, September 2000. (doi)
• C. Tu, T.D. Tran, J.L. Prince, and P.N. Topiwala, "Projection-based block motion estimation for video coding", Proc. SPIE Applications of Digital Image Processing XXIII, San Diego, California, August 2000.
• D. L. Pham and J. L. Prince, "Unsupervised partial volume estimation in single-channel image data", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2000), Hilton Head Island, South Carolina, June 11-12, 2000. (doi)
• C. Xu, D.L. Pham, and J.L. Prince, "Medical Image Segmentation Using Deformable Models", SPIE Handbook on Medical Imaging -- Volume III: Medical Image Analysis, edited by J.M. Fitzpatrick and M. Sonka, May 2000.
• D.L. Pham, C. Xu, and J.L. Prince, "Current Methods in Medical Image Segmentation", Annual Review of Biomedical Engineering, 2:315-338, 2000. (doi)
• C. Xu, A. Yezzi, and J.L. Prince, "On the Relationship between Parametric and Geometric Active Contours", Proc. of 34th Asilomar Conference on Signals, Systems, and Computers,, 483-489, October 2000. (doi)
• C. Xu and J.L. Prince, "Gradient Vector Flow Deformable Models", Handbook of Medical Imaging, edited by Isaac Bankman, Academic Press, September, 2000.
• X. Han, M.E. Rettmann, C. Xu, and J.L. Prince, "Morphology on Triangle Meshes Using Geodesic Distance", Conference on Information Sciences and Systems (CISS 2000), Princeton, New Jersey, March 15-17, 2000.
• C. Xu and J.L. Prince, "Global Optimality of Gradient Vector Flow", Conference on Information Sciences and Systems (CISS 2000), Princeton, New Jersey, March 15-17, 2000.

1999

• M.E. Rettmann, C. Xu, D.L. Pham, and J.L. Prince, "Automated Segmentation of Sulcal Regions", The Second International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI 1999), Cambridge, UK, September 19-22, 1999.
• C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince, "Reconstruction of the Human Cerebral Cortex from Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 18(6):467-480, June 1999. (doi) (PubMed)
• M.E. Etemad, C. Xu, D.L. Pham, D. Yu, and J.L. Prince, "On Automated Segmentation of Buried Gyri", Fifth International Conference on Functional Mapping of the Human Brain (HBM 1999), Dusseldorf, Germany, June 22-26, 1999.
• D.L. Pham and J.L. Prince, "Adaptive Fuzzy Segmentation of Magnetic Resonance Images", IEEE Trans. on Medical Imaging, 18(9):737-752, September 1999. (doi) (PubMed)
• W.S. Kerwin and J.L. Prince, "The Kriging Update Model and Recursive Space-Time Function Estimation", IEEE Trans. on Signal Processing, 47(11):2942-2952, November 1999. (doi)
• D.L. Pham and J.L. Prince, "An Adaptive Fuzzy Segmentation Algorithm for Three-dimensional Magnetic Resonance Images", 16th Conference on Information Processing in Medical Imaging (IPMI 1999), Visegrád, Hungary, June 28 - July 2, 1999.
• W.S. Kerwin and J.L. Prince, "On the Optimality of Recursive Unbiased State Estimation with Unknown Inputs", Conference on Information Sciences and Systems (CISS 1999), Baltimore, Maryland, March 17-19, 1999.
• D.L. Pham and J.L. Prince, "A Generalized EM Algorithm for Robust Segmentation of Magnetic Resonance Images", Conference on Information Sciences and Systems (CISS 1999), Baltimore, Maryland, March 17-19, 1999.
• C.A. Davatzikos and J.L. Prince, "Convexity Analysis of Active Contour Algorithms", Image and Vision Computing, 17(1):27-36, January 1999.

1998

• W.S. Kerwin and J.L. Prince, "MR tag surface tracking using a spatio-temporal filter/interpolator", IEEE International Conference on Image Processing (ICIP 1998), Chicago, Illinois, October 4-7, 1998. (doi)
• N.F. Osman and J.L. Prince, "Angle images for measuring heart motion from tagged MRI", IEEE International Conference on Image Processing (ICIP 1998), Chicago, Illinois, October 4-7, 1998. (doi)
• C. Xu, D.L. Pham, M.E. Rettmann, D.N. Yu, and J.L. Prince, "Reconstruction of the Central Layer of the Human Cerebral Cortex from MR images", The First International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI 1998), Cambridge, Massachusetts, October 11-13, 1998.
• C. Xu, M.E. Etemad, D. Yu, D.L. Pham, and J.L. Prince, "A Spherical Map for Cortical Geometry", Fourth International Conference on Functional Mapping of the Human Brain (HBM 1998), Montreal, Canada, June 7-12, 1998.
• A.F. Goldszal, C. Davatzikos, D.L. Pham, M.X.H. Yan, R.N. Bryan, and S.M. Resnick, "An Image Processing System for Qualitative and Quantitative Volumetric Analysis of Brain Images", Journal of Computer Assisted Tomography, 22(5):827-837, 1998.
• N. Osman and J.L. Prince, "3-D Vector Tomography on Bounded Domains", Inverse Problems, 14:185-196, 1998.
• C. Xu and J.L. Prince, "Generalized Gradient Vector Flow External Forces for Active Contours", Signal Processing, 71(2):131-139, December 1998.
• D.L. Pham and J.L. Prince, "Partial Volume Estimation and the Fuzzy C-means Algorithm", IEEE International Conference on Image Processing (ICIP 1998), Chicago, Illinois, October 4-7, 1998. (doi)
• J.L. Prince and C. Xu, "Nonconservative force models in active geometry", Proc. Image and Multidim. Dig. Sig. Proc., pg.139-142, Alpbach, Austria, July 1998.
• W.S. Kerwin and J.L. Prince, "Recursive Filtering and Interpolation Algorithm for Function Sequences of Any Dimension", Proc. Image and Multidim. Dig. Sig. Proc, pg.239-242, Alpbach, Austria, July 1998.
• C. Xu and J.L. Prince, "Snakes, shapes, and gradient vector flow", IEEE Trans. on Image Processing, 7(3):359-369, March 1998. (doi) (PubMed)
• D.L. Pham and J.L. Prince, "Adaptive fuzzy c-means algorithm for image segmentation in the presence of intensity inhomogeneities", Proc. SPIE Vol.3338, Medical Imaging 1998: Image Processing, pg.555-563, San Diego, California, February 21-27, 1998.

1997

• S.N. Gupta, J.L. Prince, and S. Androutsellis-Theotokis, "Bandpass optical flow for tagged MR imaging", IEEE International Conference on Image Processing (ICIP 1997), Washington, District of Columbia, October 26-29, 1997. (doi)
• D.L. Pham, J.L. Prince, A.P. Dagher, and C. Xu, "An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging", International Journal of Pattern Recognition and Artificial Intelligence, 11(8):1189-1211, 1997. (doi)
• C. Xu, D.L. Pham, and J.L. Prince, "Finding the Brain Cortex Using Fuzzy Segmentation, Isosurfaces, and Deformable Surface Models", 15th Conference on Information Processing in Medical Imaging (IPMI 1997), Poultney, Vermont, June 9-13, 1997.
• C. Xu and J.L. Prince, "Gradient Vector Flow: A New External Force for Snakes", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 1997), San Juan, Puerto Rico, June 17-19, 1997. (doi)
• N.F. Osman and J.L. Prince, "Reconstruction of Vector Fields in Bounded Domain Vector Tomography", IEEE International Conference on Image Processing (ICIP 1997), Washington, District of Columbia, October 26-29, 1997. (doi)
• N.F. Osman and J.L. Prince, "Reconstructed Potential Functions in Bounded Domain Vector Tomography", Conference on Information Sciences and Systems (CISS 1997), Baltimore, Maryland, March 19-21, 1997.

1996

• S.N. Gupta and J.L. Prince, "On Div-Curl regularization for motion estimation in 3-D volumetric imaging", IEEE International Conference on Image Processing (ICIP 1996), Lausanne, Switzerland, September 16-19, 1996. (doi)
• S. Androutsellis-Theotokis and J.L. Prince, "Experiments in multiresolution motion estimation for multifrequency tagged cardiac MR images", IEEE International Conference on Image Processing (ICIP 1996), Lausanne, Switzerland, September 16-19, 1996. (doi)
• E. Waks, J.L. Prince, and A.S. Douglas, "Cardiac motion simulator for tagged MRI", IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 1996), San Francisco, California, June 21-22, 1996. (doi)
• D.L. Pham, J.L. Prince, and A.P. Dagher, "Estimation of Joint Probability Density Functions in Magnetic Resonance Imaging", Proceedings of The Ninth Workshop on Image and Multidimensional Signal Processing (IMDSP), pp. 148-149, 1996.
• C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan, "Morphological analysis of brain structures using spatial normalization", Proc. Visualization in Biomedical Computing, Hamburg, Germany, September 22-25, 1996.
• C.A. Davatzikos, M. Vaillant, S. Resnick, J.L. Prince, S. Letovsky, and R.N. Bryan, "A Computerized Approach for Morphological Analysis of the Corpus Callosum", Journal of Computer Assisted Tomography, 20(1):88-97, January, 1996.
• J.M. Links, J.L. Prince, and S.N. Gupta, "A Vector Wiener Filter for Dual-Radionuclide Imaging", IEEE Trans. on Medical Imaging, 15(5):700-709, October 1996. (doi)
• J.L. Prince, "Convolution Backprojection Formulas for 3-D Vector Tomography with Application to MRI", IEEE Trans. on Image Processing, 5(10):1462-1472, October 1996. (doi)
• C.A. Davatzikos and J.L. Prince, "Convexity Analysis of Active Contour Problems", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 1996), San Francisco, California, June 18-20, 1996. (doi)
• C.A. Davatzikos, J.L. Prince, and R.N. Bryan, "Image Registration Based on Boundary Mapping", IEEE Trans. on Medical Imaging, 15(1):112-115, February 1996. (doi)
• S.N. Gupta and J.L. Prince, "Stochastic Models for DIV-CURL Optical Flow Methods", IEEE Signal Processing Letters, 3(2):32-34, February 1996. (doi)

1995

• T.S. Denny Jr. and J.L. Prince, "Reconstruction of 3-D left ventricular motion from planar tagged cardiac MR images: an estimation theoretic approach", IEEE Trans. on Medical Imaging, 14(4):625-635, December 1995. (doi)
• T.S. Denny Jr. and J.L. Prince, "A frequency domain performance analysis of Horn and Schunck's optical flow algorithm for deformable motion", IEEE Trans. on Image Processing, 4(9):1324-1327, September 1995. (doi)
• C.A. Davatzikos and J.L. Prince, "An Active Contour Model for Mapping the Cortex", IEEE Trans. on Medical Imaging, 14(1):65-80, March 1995. (doi)
• S.N. Gupta and J.L. Prince, "Stochastic Formulations of Optical Flow Algorithms Under Variable Brightness Conditions", IEEE International Conference on Image Processing (ICIP 1995), Washington, District of Columbia, October 23-26, 1995. (doi)
• J.L. Prince, Q. Tan, and D. Pham, "Optimization of MR pulse sequences for Bayesian image segmentation", Medical Physics, 22(10):1651-1656, October 1995. (PubMed)
• T.S. Denney, Jr., and J.L. Prince, "A frequency domain performance analysis of Horn and Schunck's optical flow algorithm for deformable motion", IEEE Trans. on Image Processing, 4(9):1324-1328, September 1995. (doi)
• J.L. Prince, "Tomographic Imaging of Vector Fields", Invited Paper, OSA Spring Topical Meetings, Signal Recovery and Synthesis V, pp. 2-4, March 12-17, 1995.
• S. Gupta and J.L. Prince, "On Well-posed stochastic formulations of optical flow", Conference on Information Sciences and Systems (CISS 1995), Baltimore, Maryland, March 1995.

1994

• T.S. Denny Jr. and J.L. Prince, "3D displacement field reconstruction on an irregular domain from planar tagged cardiac MR images", Proceedings of the 1994 IEEE Workshop on Motion of Non-Rigid and Articulated Objects, pp. 172-177, 1994. (doi)
• T.S. Denny Jr. and J.L. Prince, "3D displacement field reconstruction from planar tagged cardiac MR images", Proceedings of the IEEE Workshop on Biomedical Image Analysis, pp. 51-60, June 24-25 1994. (doi)
• M.A. Guttman, J.L. Prince, E.R. McVeigh, "Tag and contour detection in tagged MR images of the left ventricle", IEEE Trans. on Medical Imaging, 13(1):74-88, March 1994. (doi)
• C.A. Davatzikos and J.L. Prince, "Brain Image Registration Based on Curve Mapping", Proceedings of the IEEE Workshop on Biomedical Image Analysis, Seattle, WA, pp. 245-254, June 24-25, 1994. (doi)
• J.L. Prince, "A Convolution Backprojection Formula for Three-Dimensional Vector Tomography", IEEE International Conference on Image Processing (ICIP 1994), Austin, Texas, November 13-16, 1994. (doi)
• T.S. Denny Jr., J.L. Prince, M.J. Lopez, and E.R. McVeigh, "Optimal tag pattern validation using magnetic resonance imaging", IEEE International Conference on Image Processing (ICIP 1994), Austin, Texas, November 13-16, 1994. (doi)
• J.L. Prince, "Tomographic Reconstruction of 3-D Vector Fields Using Inner Product Probes", IEEE Trans. on Image Processing, 3(2):216-219, March 1994. (doi)
• T.S. Denney Jr. and J.L. Prince, "Optimal Brightness Functions for Optical Flow Estimation of Deformable Motion", IEEE Trans. on Image Processing, 3(2):178-191, March 1994. (doi)
• T.S. Denney Jr. and J.L. Prince, "New Results on the Performance of Optical Flow for Deformable Motion", Conference on Information Sciences and Systems (CISS 1994), Princeton, New Jersey, March 1994.

1993

• C.A. Davatzikos, J.L. Prince, and R.N. Bryan, "Brain Image Registration Based on Cortical Contour Mapping", Proceedings of the IEEE 1993 Nuclear Science Symposium and Medical Imaging Conference, San Francisco, CA, pp. 1823-1826, October 31 - November 6, 1993.
• J.L. Prince and A.S. Wilsky, "Hierarchical reconstruction using geometry and sinogram restoration", IEEE Trans. on Image Processing, 2(3):401-416, July 1993. (doi)
• C.A. Davatzikos and J.L. Prince, "Adaptive active contour algorithms for extracting and mapping thick curves", IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 1993), New York, NY, June 15-17, 1993. (doi)
• TS. Denny Jr. and J.L. Prince, "Optimal brightness patterns for 2-D optical flow", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1993), Minneapolis, Minnesota, April 27-30, 1993. (doi)
• J.L. Prince, "Tomographic reconstruction of 3-D vector fields", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1993), Minneapolis, Minnesota, April 27-30, 1993. (doi)

1992

• J.L. Prince and E.R. McVeigh, "Motion estimation from tagged MR image sequences", IEEE Trans. on Medical Imaging, 11(2):238-249, June 1992. (doi)
• M.A. Guttman, E.R. McVeigh, and J.L. Prince, "Contour Estimation In Tagged Cardiac Magnetic Resonance Images", IEEE Engineering in Medicine and Biology Society, 1992.
• H.W. Muller-Gartner, J.M. Links, J.L. Prince, R.N. Bryan, E.R. McVeigh, J.P. Leal, C. Davatzikos, and J.J. Frost, "Measurement of Tracer Concentration in Brain Gray Matter Using Positron Emission Tomography: MRI-Based Correction for Partial Volume Effects", J. Cerebral Blood Flow and Metabolism, 12(4):571-583, 1992. (PubMed)
• T.S. Denny Jr. and J.L. Prince, "On optimal brightness functions for optical flow", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1992), San Francisco, California, March 23-26, 1992. (doi)
• C.A. Davatzikos and J.L. Prince, "Segmentation and mapping of highly convoluted contours with applications to medical images", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1992), San Francisco, California, March 23-26, 1992. (doi)

1991

• J.L. Prince and E.R. McVeigh, "Optical flow for tagged MR images", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 1991), Toronto, Canada, May 14-17, 1991. (doi)
• C.A. Davatzikos and J.L. Prince, "Charting Thick Sheets In 3-D", Proceedings of the Seventh Workshop on Multidimensional Signal Processing, 1991.

1990

• J.L. Prince, "Consistency and convexity in object reconstruction from projections", IEEE International Conference on Systems Engineering, pp. 543-546, 1990. (doi)
• J.L. Prince and A.S. Willsky, "Reconstructing convex sets from support line measurements", IEEE Trans. on Pattern Analysis Machine Intelligence, 12(4):377-389, April 1990. (doi)
• J.L. Prince, "An Iterative Approach To Sinogram Restoration", Proceedings of the Twelfth Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 366-367, November 1-4 1990.